Rmu_ssc0000276.1_g000006

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000276.1
OG0010645
Physical Location & Seq
Reverse (-)
35253 .. 36292
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 648 bp
atgtggctgcctaataataaacaggaaaagagggatgcagcagggactgcattgatagcagtggcaatagacaaagacaagaatagccaaacttcactgaaatgggcaatagaccatcttgctcagaaaggccaaactattcttctcctccatgtcaagatcaaaccctccttgttttctcaatcacctaatctttcaaactccaacacaagaagtaacccaaattgggaccagcatttggtatgcaaagaccctgatccccagaccagggaattgttccttccttttcgcgttttctgcacaagaaaaaatatgcaatgcaaagacatcgtactagaagactcggatgtagctaaagcattgatcgaatacactacccaaagtgcaatcgagcatttggttgttggtgcctcatcaaaaagcggttttcttagattcaaacaatcagatattccgggcactgtaatgaaattggctccagatttttgtaatgtatatatcatatcgaaaggaaaacctcattcctcgagagctgccacgcgtccagctccagccatctcacctttacggaaccaagttcgtaaccaaatcaacaccacaaaatcagagccgtatgtctaccctcctaataatatgaaaggtaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Usp

Protein Analysis

215

Amino Acids

24.07

Weight (kDa)

9.67

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 19 - 148 5.2e-07 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24370 AT4G31230 AT4G31230
fragaria_vesca FvH4_2g36560 FvH4_2g36560
malus_domestica MD15G1105300.v1.1
prunus_persica Prupe.1G457100_v2.0.a1
pyrus_communis pycom08g10450
rosa_chinensis RchiOBHm_Chr6g0305261
rosa_laevigata RLG00000010904
rosa_multiflora Rmu_ssc0000276.1_g000006
rosa_roxburghii Rroxscaffold_7G00162990 Rroxscaffold_7G00163000
rosa_rugosa Rorug06G0339100 Rorug06G0339200
rosa_samantha Rh6AG450700 Rh6BG450700 Rh6CG464800 Rh6DG451400
rosa_wichuraiana Rw6G039280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 407
AccB7I CCANNNNNTGG 1 cut(s) 238
AccI GTMKAC 1 cut(s) 618
AccII CGCG 2 cut(s) 291, 541
AciI CCGC 1 cut(s) 423
AclWI GGATC 1 cut(s) 251
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 4 cut(s) 226, 238, 267, 268
AflIII ACRYGT 1 cut(s) 539
AgsI TTSAA 2 cut(s) 198, 439
AjnI CCWGG 1 cut(s) 266
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 3 cut(s) 353, 533, 548
AluI AGCT 3 cut(s) 353, 533, 548
AlwI GGATC 1 cut(s) 251
AlwNI CAGNNNCTG 1 cut(s) 47
Ama87I CYCGRG 1 cut(s) 526
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 3 cut(s) 7, 38, 533
AspS9I GGNCC 1 cut(s) 229
AsuC2I CCSGG 1 cut(s) 456
AsuHPI GGTGA 2 cut(s) 177, 552
AvaI CYCGRG 1 cut(s) 526
AvaII GGWCC 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 461
BanI GGYRCC 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 345
BbvI GCAGC 2 cut(s) 50, 520
BccI CCATC 2 cut(s) 123, 563
BceAI ACGGC 1 cut(s) 595
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BciT130I CCWGG 1 cut(s) 268
BcnI CCSGG 1 cut(s) 456
BfaI CTAG 1 cut(s) 335
BisI GCNGC 3 cut(s) 8, 39, 534
BlsI GCNGC 3 cut(s) 9, 40, 535
Bme1390I CCNGG 2 cut(s) 268, 456
Bme18I GGWCC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 526
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 4 cut(s) 230, 409, 477, 572
BmrFI CCNGG 2 cut(s) 268, 456
BmsI GCATC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 345
BpmI CTGGAG 2 cut(s) 462, 534
BpuMI CCSGG 1 cut(s) 456
BsaJI CCNNGG 1 cut(s) 267
Bsc4I CCNNNNNNNGG 4 cut(s) 226, 238, 267, 268
Bse3DI GCAATG 1 cut(s) 323
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 2 cut(s) 40, 352
BseLI CCNNNNNNNGG 4 cut(s) 226, 238, 267, 268
BseMI GCAATG 1 cut(s) 323
BseMII CTCAG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 461
BseXI GCAGC 2 cut(s) 50, 520
BsgI GTGCAG 1 cut(s) 283
Bsh1236I CGCG 2 cut(s) 291, 541
BshFI GGCC 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 526
BsiSI CCGG 1 cut(s) 455
BslFI GGGAC 2 cut(s) 58, 242
BslI CCNNNNNNNGG 4 cut(s) 226, 238, 267, 268
BsmFI GGGAC 2 cut(s) 58, 242
BsnI GGCC 1 cut(s) 132
BsoBI CYCGRG 1 cut(s) 526
Bsp1286I GDGCHC 1 cut(s) 461
Bsp143I GATC 3 cut(s) 159, 256, 363
BspACI CCGC 1 cut(s) 423
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 136
BspFNI CGCG 2 cut(s) 291, 541
BspLI GGNNCC 4 cut(s) 230, 409, 477, 572
BspPI GGATC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 3 cut(s) 159, 256, 363
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 463
BstAPI GCANNNNNTGC 1 cut(s) 47
BstDEI CTNAG 2 cut(s) 123, 431
BstF5I GGATG 2 cut(s) 40, 352
BstFNI CGCG 2 cut(s) 291, 541
BstKTI GATC 3 cut(s) 162, 259, 366
BstMBI GATC 3 cut(s) 159, 256, 363
BstMWI GCNNNNNNNGC 3 cut(s) 47, 56, 297
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 266, 454
BstSLI GKGCMC 1 cut(s) 461
BstUI CGCG 2 cut(s) 291, 541
BstV1I GCAGC 2 cut(s) 50, 520
BstV2I GAAGAC 1 cut(s) 345
BsuRI GGCC 1 cut(s) 132
BtsCI GGATG 2 cut(s) 40, 352
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 3 cut(s) 66, 95, 459
CaiI CAGNNNCTG 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 229
CseI GACGC 1 cut(s) 530
Csp6I GTAC 1 cut(s) 332
CviAII CATG 1 cut(s) 152
CviJI RGCY 9 cut(s) 7, 87, 132, 353, 476, 533, 548, 554, 610
CviKI_1 RGCY 9 cut(s) 7, 87, 132, 353, 476, 533, 548, 554, 610
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 2 cut(s) 123, 431
DpnI GATC 3 cut(s) 161, 258, 365
DpnII GATC 3 cut(s) 159, 256, 363
Eco47I GGWCC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 526
EcoRII CCWGG 1 cut(s) 266
FaeI CATG 1 cut(s) 155
FaiI YATR 8 cut(s) 153, 244, 314, 496, 498, 503, 615, 635
FaqI GGGAC 2 cut(s) 58, 242
FatI CATG 1 cut(s) 151
FblI GTMKAC 1 cut(s) 618
Fnu4HI GCNGC 3 cut(s) 8, 39, 534
FokI GGATG 2 cut(s) 47, 359
Fsp4HI GCNGC 3 cut(s) 8, 39, 534
FspBI CTAG 1 cut(s) 335
GluI GCNGC 3 cut(s) 8, 39, 534
GsuI CTGGAG 2 cut(s) 462, 534
HaeIII GGCC 1 cut(s) 132
HapII CCGG 1 cut(s) 455
HgaI GACGC 1 cut(s) 530
Hin1II CATG 1 cut(s) 155
HinfI GANTC 2 cut(s) 341, 435
HpaII CCGG 1 cut(s) 455
HphI GGTGA 2 cut(s) 177, 552
Hpy166II GTNNAC 1 cut(s) 619
Hpy188I TCNGA 4 cut(s) 126, 346, 448, 607
Hpy188III TCNNGA 3 cut(s) 157, 479, 528
Hpy8I GTNNAC 1 cut(s) 619
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4V TGCA 7 cut(s) 38, 50, 246, 300, 316, 321, 386
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 56, 297
HpyF3I CTNAG 2 cut(s) 123, 431
Hsp92II CATG 1 cut(s) 155
Kzo9I GATC 3 cut(s) 159, 256, 363
LmnI GCTCC 2 cut(s) 481, 553
Lsp1109I GCAGC 2 cut(s) 50, 520
LweI GCATC 1 cut(s) 25
MaeI CTAG 1 cut(s) 335
MaeIII GTNAC 2 cut(s) 215, 581
MalI GATC 3 cut(s) 161, 258, 365
MboI GATC 3 cut(s) 159, 256, 363
MboII GAAGA 2 cut(s) 134, 350
MhlI GDGCHC 1 cut(s) 461
MluCI AATT 3 cut(s) 223, 272, 470
MluI ACGCGT 1 cut(s) 539
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 7 cut(s) 24, 158, 178, 421, 528, 535, 633
MslI CAYNNNNRTG 2 cut(s) 100, 464
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 2 cut(s) 268, 456
MvaI CCWGG 1 cut(s) 268
MvnI CGCG 2 cut(s) 291, 541
MwoI GCNNNNNNNGC 3 cut(s) 47, 56, 297
NciI CCSGG 1 cut(s) 456
NdeII GATC 3 cut(s) 159, 256, 363
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 4 cut(s) 230, 409, 477, 572
PaeR7I CTCGAG 1 cut(s) 526
PfeI GAWTC 1 cut(s) 435
PflMI CCANNNNNTGG 1 cut(s) 238
PkrI GCNGC 3 cut(s) 9, 40, 535
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 4 cut(s) 230, 409, 477, 572
PspPI GGNCC 1 cut(s) 229
PstNI CAGNNNCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
RseI CAYNNNNRTG 2 cut(s) 100, 464
SatI GCNGC 3 cut(s) 8, 39, 534
Sau3AI GATC 3 cut(s) 159, 256, 363
Sau96I GGNCC 1 cut(s) 229
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 2 cut(s) 268, 456
SduI GDGCHC 1 cut(s) 461
SetI ASST 7 cut(s) 190, 355, 520, 535, 550, 565, 643
SfaNI GCATC 1 cut(s) 25
Sfr274I CTCGAG 1 cut(s) 526
SinI GGWCC 1 cut(s) 229
SlaI CTCGAG 1 cut(s) 526
SmiMI CAYNNNNRTG 2 cut(s) 100, 464
SmlI CTYRAG 1 cut(s) 526
SmoI CTYRAG 1 cut(s) 526
Sse9I AATT 3 cut(s) 223, 272, 470
SsiI CCGC 1 cut(s) 423
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 2 cut(s) 266, 454
TaaI ACNGT 1 cut(s) 463
TaqI TCGA 4 cut(s) 366, 390, 506, 527
TasI AATT 3 cut(s) 223, 272, 470
TfiI GAWTC 1 cut(s) 435
TscAI CASTG 3 cut(s) 66, 102, 466
TseI GCWGC 3 cut(s) 7, 38, 533
TspDTI ATGAA 1 cut(s) 482
TspGWI ACGGA 1 cut(s) 583
TspRI CASTG 3 cut(s) 66, 102, 466
Van91I CCANNNNNTGG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 229
XhoI CTCGAG 1 cut(s) 526
XmiI GTMKAC 1 cut(s) 618
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.