Rmu_ssc0000315.1_g000001

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000315.1
OG0016068
Physical Location & Seq
Reverse (-)
255 .. 1137
883 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 522 bp
atgctggcaaagaaaatttgtgatgctgatcgtgttggtcagagagcatggaagctgctgcgtatggcatttatatgggcaagaaagggcggcgtcttcaaacaccgcctcatgatggaactgagggtcgtccccaagttccttaagaatcaccttggcacaaatgcatcaacaaagtcaagaccacaaatccattactttgaacgcgagttctccttcgacaagaccccccttttcaatctcaaaatgcaccgaaggaagagcttcattacagattctgatcatgctgatgatcgtgatcgtgatcgtgatcgtgatgatgatggtgatgatcttgaccaggggctaacatcatcagaagactatggtacagctgcttattcatgtgctaattattatgaggacgaagcagttgacagaaaggcagatgagttcatcgccgaattctatcggcaaatgaagctgcaaagacaaatttcatacacacggtacaatgacatgttaaatagaggcgcaaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

173

Amino Acids

20.51

Weight (kDa)

8.8

Isoelectric Point (pI)

29.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 135 - 170 5.2e-17 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02170 AT5G38700
fragaria_vesca FvH4_5g39610
malus_domestica MD03G1297400.v1.1 MD11G1317200.v1.1
prunus_persica Prupe.8G269600_v2.0.a1
pyrus_communis pycom03g23590 pycom11g27680
rosa_chinensis RchiOBHm_Chr7g0241911
rosa_laevigata RLG00000000530
rosa_multiflora Rmu_ssc0000315.1_g000001
rosa_roxburghii Rroxscaffold_3G00218490
rosa_rugosa Rorug07G0348600
rosa_samantha Rh7DG488200
rosa_wichuraiana Rw7G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 207
AciI CCGC 2 cut(s) 90, 106
AcsI RAATTY 3 cut(s) 15, 443, 474
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 2 cut(s) 370, 491
AfiI CCNNNNNNNGG 1 cut(s) 115
AflII CTTAAG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 498
AgsI TTSAA 3 cut(s) 100, 203, 238
AjnI CCWGG 1 cut(s) 339
AluBI AGCT 4 cut(s) 55, 264, 374, 463
AluI AGCT 4 cut(s) 55, 264, 374, 463
AlwNI CAGNNNCTG 1 cut(s) 278
ApeKI GCWGC 4 cut(s) 55, 58, 374, 463
ApoI RAATTY 3 cut(s) 15, 443, 474
Asp700I GAANNNNTTC 1 cut(s) 263
AspLEI GCGC 1 cut(s) 515
AsuHPI GGTGA 2 cut(s) 143, 338
BbsI GAAGAC 2 cut(s) 88, 366
BbvI GCAGC 4 cut(s) 42, 45, 361, 450
BccI CCATC 2 cut(s) 109, 317
BciT130I CCWGG 1 cut(s) 341
BclI TGATCA 1 cut(s) 280
BfrI CTTAAG 1 cut(s) 143
BisI GCNGC 5 cut(s) 56, 59, 91, 375, 464
BlsI GCNGC 5 cut(s) 57, 60, 92, 376, 465
Bme1390I CCNGG 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 2 cut(s) 13, 176
BpiI GAAGAC 2 cut(s) 88, 366
BsaBI GATNNNNATC 5 cut(s) 27, 279, 297, 303, 309
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 154, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse8I GATNNNNATC 5 cut(s) 27, 279, 297, 303, 309
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 2 cut(s) 154, 340
BseJI GATNNNNATC 5 cut(s) 27, 279, 297, 303, 309
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 113
BseXI GCAGC 4 cut(s) 42, 45, 361, 450
Bsh1236I CGCG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 116
Bsp143I GATC 7 cut(s) 28, 280, 292, 298, 304, 310, 331
BspACI CCGC 2 cut(s) 90, 106
BspCNI CTCAG 1 cut(s) 114
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 111
BspQI GCTCTTC 1 cut(s) 254
BspTI CTTAAG 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 154, 340
BssMI GATC 7 cut(s) 28, 280, 292, 298, 304, 310, 331
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 1 cut(s) 489
Bst6I CTCTTC 1 cut(s) 254
BstACI GRCGYC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 122
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 7 cut(s) 31, 283, 295, 301, 307, 313, 334
BstMBI GATC 7 cut(s) 28, 280, 292, 298, 304, 310, 331
BstMWI GCNNNNNNNGC 1 cut(s) 460
BstNI CCWGG 1 cut(s) 341
BstNSI RCATGY 1 cut(s) 502
BstSCI CCNGG 1 cut(s) 339
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 4 cut(s) 42, 45, 361, 450
BstV2I GAAGAC 2 cut(s) 88, 366
BtgZI GCGATG 1 cut(s) 421
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 278
CciI TCATGA 1 cut(s) 111
CfoI GCGC 1 cut(s) 515
CseI GACGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 369, 490
CviAII CATG 5 cut(s) 48, 112, 284, 384, 499
CviJI RGCY 5 cut(s) 55, 264, 346, 374, 463
CviKI_1 RGCY 5 cut(s) 55, 264, 346, 374, 463
CviQI GTAC 2 cut(s) 369, 490
DdeI CTNAG 1 cut(s) 122
DpnI GATC 7 cut(s) 30, 282, 294, 300, 306, 312, 333
DpnII GATC 7 cut(s) 28, 280, 292, 298, 304, 310, 331
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco130I CCWWGG 1 cut(s) 154
EcoRI GAATTC 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 154
EcoT22I ATGCAT 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 5 cut(s) 51, 115, 287, 387, 502
FaqI GGGAC 1 cut(s) 116
FatI CATG 5 cut(s) 47, 111, 283, 383, 498
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 5 cut(s) 56, 59, 91, 375, 464
Fsp4HI GCNGC 5 cut(s) 56, 59, 91, 375, 464
GlaI GCGC 1 cut(s) 514
GluI GCNGC 5 cut(s) 56, 59, 91, 375, 464
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 515
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 5 cut(s) 51, 115, 287, 387, 502
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 2 cut(s) 148, 275
HphI GGTGA 2 cut(s) 143, 338
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 3 cut(s) 42, 280, 358
Hpy188III TCNNGA 7 cut(s) 112, 180, 296, 302, 308, 314, 335
Hpy8I GTNNAC 1 cut(s) 415
HpyAV CCTTC 2 cut(s) 226, 249
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4V TGCA 3 cut(s) 167, 250, 466
HpyF10VI GCNNNNNNNGC 1 cut(s) 460
HpyF3I CTNAG 1 cut(s) 122
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 5 cut(s) 51, 115, 287, 387, 502
HspAI GCGC 1 cut(s) 513
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 7 cut(s) 28, 280, 292, 298, 304, 310, 331
LguI GCTCTTC 1 cut(s) 254
LpnPI CCDG 2 cut(s) 326, 353
Lsp1109I GCAGC 4 cut(s) 42, 45, 361, 450
LweI GCATC 2 cut(s) 13, 176
MalI GATC 7 cut(s) 30, 282, 294, 300, 306, 312, 333
MboI GATC 7 cut(s) 28, 280, 292, 298, 304, 310, 331
MboII GAAGA 3 cut(s) 88, 271, 371
MluCI AATT 4 cut(s) 15, 391, 443, 474
MnlI CCTC 4 cut(s) 117, 119, 394, 503
Mph1103I ATGCAT 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 2 cut(s) 144, 503
MslI CAYNNNNRTG 2 cut(s) 73, 288
MspA1I CMGCKG 1 cut(s) 374
MspCI CTTAAG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 341
MvaI CCWGG 1 cut(s) 341
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 460
NdeII GATC 7 cut(s) 28, 280, 292, 298, 304, 310, 331
NlaIII CATG 5 cut(s) 51, 115, 287, 387, 502
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 1 cut(s) 502
PagI TCATGA 1 cut(s) 111
PciI ACATGT 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 2 cut(s) 148, 275
PkrI GCNGC 5 cut(s) 57, 60, 92, 376, 465
PscI ACATGT 1 cut(s) 498
Psp6I CCWGG 1 cut(s) 339
PspGI CCWGG 1 cut(s) 339
PstNI CAGNNNCTG 1 cut(s) 278
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 2 cut(s) 370, 491
RsaNI GTAC 2 cut(s) 369, 490
RseI CAYNNNNRTG 2 cut(s) 73, 288
SapI GCTCTTC 1 cut(s) 254
SaqAI TTAA 2 cut(s) 144, 503
SatI GCNGC 5 cut(s) 56, 59, 91, 375, 464
Sau3AI GATC 7 cut(s) 28, 280, 292, 298, 304, 310, 331
ScrFI CCNGG 1 cut(s) 341
SetI ASST 5 cut(s) 57, 156, 266, 376, 465
SfaNI GCATC 2 cut(s) 13, 176
SmiMI CAYNNNNRTG 2 cut(s) 73, 288
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 4 cut(s) 15, 391, 443, 474
SsiI CCGC 2 cut(s) 90, 106
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 1 cut(s) 489
TaqI TCGA 1 cut(s) 219
TasI AATT 4 cut(s) 15, 391, 443, 474
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 2 cut(s) 148, 275
Tru1I TTAA 2 cut(s) 144, 503
Tru9I TTAA 2 cut(s) 144, 503
TseI GCWGC 4 cut(s) 55, 58, 374, 463
TspDTI ATGAA 5 cut(s) 256, 372, 424, 468, 473
Vha464I CTTAAG 1 cut(s) 143
XapI RAATTY 3 cut(s) 15, 443, 474
XceI RCATGY 1 cut(s) 502
XmnI GAANNNNTTC 1 cut(s) 263
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.