Rmu_ssc0000412.1_g000001

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000412.1
OG0006492
Physical Location & Seq
Forward (+)
16127 .. 19100
2974 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1533 bp
atgctgaggaagaggaccaggtcaactcagaaggatcaagatcaacaccaaatggggcatctgccgatttctaatgctggctctgagtcacatttccggtctgatgttcttggaccgaatctgaaaagcaactcttttttcactgcccctggtctgtttgtggggttgagtcctataggtttaacagattctgattcagttaggagcccaacttcgcctctagatttcagggtgttttcaaatctaggcagcccctttaggtccccaggatcacctcttgatgggcataagaggagctggggtagtagtaaagtaggcttaagcatcatcgactctcttgatgatgatgtcaagttttctgggaaagttcccagatcatcagagagtaagaacattctttttggacctgggatgaggactaaaacccgggattctcaatccaataccagttctattgggtcacctagatctctgcctaagaattatgcaattttccctcattccaaagtcaagtctcctttacaagagagtagctctgatgttgtttttgaaattggagaaacaccatcagaacctgagtcatttggaaaaattacgtcttgctcactggattctgctaggactttttcaaccctatcaggtttaagcaagcttaaccccaattccactactggaaatttttgcttggagaatttaaccaacccacaatttattggaggaagccccaactcaaccacgcaaatgactgttggatccattggttctggcaatgggtttgttgggtctctctcagctagtgagattgagctttctgaggattatacttgtgtaatttctcatggtgccaatcccaaaacaactcatatctttggtgactgcgttttgggatgccactctgaagatttgagcaattttggtaagaatgagaagatggaaattggatcacctcagctggctacgagcttggggagttttgttcagtacccctcaaacaatttcctgagcttctgccactactgtaacaaagaactggaagaggggaaagacattttcatatacaggggtgagaaagcattttgcagtttgagttgtcgctctgtggagattttgaatgatgaggaattggagcagtgcgatgacgaatcttctgaaaagcctctcgacgggtcttgctttagcggcggcgtctcctccgtcgacttagaccaaatcggatatgtgcagcggctttgggagggcagtcaggtcgaggcttggaggcagattttattgctggcgggatttggtgagcacccacaccaggctccgtcgttttcttcccatggcggaagggcaaggtcgaccgccgaaagtgttggtagggctaaggccggagttgaagaagcagtggctccggcgagcctactaggatttcgatgctctctgatccaaactcagagtgagggtagtgggagttgggctgggctgttgggcttaagtccactttccctcctctttctgatttgggctgaagttgggccgggcttttggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

510

Amino Acids

54.78

Weight (kDa)

5.46

Isoelectric Point (pI)

55.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 327 - 374 1.5e-20 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 842
AccI GTMKAC 2 cut(s) 1197, 1340
AciI CCGC 6 cut(s) 1179, 1182, 1225, 1277, 1326, 1344
AclWI GGATC 6 cut(s) 42, 277, 747, 760, 949, 1420
AcsI RAATTY 2 cut(s) 676, 691
AcuI CTGAAG 2 cut(s) 918, 1530
AcyI GRCGYC 1 cut(s) 1185
AfaI GTAC 1 cut(s) 983
AfiI CCNNNNNNNGG 3 cut(s) 281, 1163, 1300
AflII CTTAAG 2 cut(s) 319, 1474
AgsI TTSAA 5 cut(s) 240, 551, 630, 1111, 1379
AjnI CCWGG 5 cut(s) 17, 148, 265, 406, 1299
AluBI AGCT 8 cut(s) 297, 534, 652, 794, 808, 952, 963, 1005
AluI AGCT 8 cut(s) 297, 534, 652, 794, 808, 952, 963, 1005
Alw21I GWGCWC 1 cut(s) 1293
Alw26I GTCTC 3 cut(s) 519, 789, 1192
AlwI GGATC 6 cut(s) 42, 277, 747, 760, 949, 1420
AlwNI CAGNNNCTG 2 cut(s) 191, 575
Ama87I CYCGRG 1 cut(s) 426
AoxI GGCC 2 cut(s) 1368, 1517
ApeKI GCWGC 2 cut(s) 249, 1222
ApoI RAATTY 2 cut(s) 676, 691
AspS9I GGNCC 5 cut(s) 15, 113, 261, 404, 1517
AsuC2I CCSGG 3 cut(s) 427, 428, 1521
AsuHPI GGTGA 6 cut(s) 264, 453, 884, 936, 1076, 1298
AvaI CYCGRG 1 cut(s) 426
AvaII GGWCC 4 cut(s) 15, 113, 261, 404
BamHI GGATCC 1 cut(s) 752
BanI GGYRCC 1 cut(s) 842
BanII GRGCYC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 1293
BbvCI CCTCAGC 2 cut(s) 5, 948
BbvI GCAGC 2 cut(s) 261, 1234
BccI CCATC 3 cut(s) 275, 574, 925
BcgI CGANNNNNNTGC 2 cut(s) 1228, 1262
BciT130I CCWGG 5 cut(s) 19, 150, 267, 408, 1301
BcnI CCSGG 3 cut(s) 427, 428, 1521
BcoDI GTCTC 3 cut(s) 519, 789, 1192
BfaI CTAG 6 cut(s) 221, 245, 465, 618, 795, 1406
BfmI CTRYAG 1 cut(s) 174
BfrI CTTAAG 2 cut(s) 319, 1474
BglII AGATCT 1 cut(s) 467
BisI GCNGC 5 cut(s) 250, 1180, 1183, 1223, 1226
BlsI GCNGC 5 cut(s) 251, 1181, 1184, 1224, 1227
Bme1390I CCNGG 8 cut(s) 19, 150, 267, 408, 427, 428, 1301, 1521
Bme18I GGWCC 4 cut(s) 15, 113, 261, 404
BmeT110I CYCGRG 1 cut(s) 426
BmgT120I GGNCC 5 cut(s) 15, 113, 261, 404, 1517
BmiI GGNNCC 6 cut(s) 206, 263, 754, 844, 1305, 1392
BmrFI CCNGG 8 cut(s) 19, 150, 267, 408, 427, 428, 1301, 1521
BmsI GCATC 4 cut(s) 67, 333, 878, 1406
BplI GAGNNNNNCTC 2 cut(s) 518, 550
Bpu10I CCTNAGC 4 cut(s) 5, 948, 1001, 1365
BpuMI CCSGG 3 cut(s) 427, 428, 1521
BsaBI GATNNNNATC 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 1185
BsaI GGTCTC 1 cut(s) 789
BsaJI CCNNGG 5 cut(s) 148, 265, 407, 426, 1321
BsaWI WCCGGW 1 cut(s) 96
BsaXI ACNNNNNCTCC 4 cut(s) 286, 316, 1473, 1503
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 1163, 1300
Bse1I ACTGG 4 cut(s) 447, 612, 676, 1035
Bse3DI GCAATG 1 cut(s) 775
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 5 cut(s) 19, 150, 267, 408, 1301
BseDI CCNNGG 5 cut(s) 148, 265, 407, 426, 1321
BseGI GGATG 2 cut(s) 417, 893
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 3 cut(s) 281, 1163, 1300
BseMI GCAATG 1 cut(s) 775
BseMII CTCAG 8 cut(s) 41, 75, 567, 804, 804, 962, 992, 1448
BseNI ACTGG 4 cut(s) 447, 612, 676, 1035
BseRI GAGGAG 3 cut(s) 307, 1180, 1481
BseXI GCAGC 2 cut(s) 261, 1234
BseYI CCCAGC 2 cut(s) 297, 1460
BsgI GTGCAG 1 cut(s) 1241
Bsh1285I CGRYCG 1 cut(s) 1344
BshFI GGCC 2 cut(s) 1370, 1519
BshNI GGYRCC 1 cut(s) 842
BsiEI CGRYCG 1 cut(s) 1344
BsiHKAI GWGCWC 1 cut(s) 1293
BsiHKCI CYCGRG 1 cut(s) 426
BsiSI CCGG 5 cut(s) 97, 427, 1371, 1394, 1520
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 3 cut(s) 281, 1163, 1300
BsmAI GTCTC 3 cut(s) 519, 789, 1192
BsmBI CGTCTC 1 cut(s) 1192
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 2 cut(s) 1370, 1519
Bso31I GGTCTC 1 cut(s) 789
BsoBI CYCGRG 1 cut(s) 426
Bsp1286I GDGCHC 2 cut(s) 209, 1293
Bsp143I GATC 8 cut(s) 34, 40, 269, 374, 467, 752, 941, 1425
Bsp19I CCATGG 1 cut(s) 1321
BspACI CCGC 6 cut(s) 1179, 1182, 1225, 1277, 1326, 1344
BspANI GGCC 2 cut(s) 1370, 1519
BspCNI CTCAG 8 cut(s) 40, 76, 568, 803, 805, 961, 993, 1447
BspLI GGNNCC 6 cut(s) 206, 263, 754, 844, 1305, 1392
BspPI GGATC 6 cut(s) 42, 277, 747, 760, 949, 1420
BspT107I GGYRCC 1 cut(s) 842
BspTI CTTAAG 2 cut(s) 319, 1474
BspTNI GGTCTC 1 cut(s) 789
BsrDI GCAATG 1 cut(s) 775
BsrI ACTGG 4 cut(s) 447, 612, 676, 1035
BssECI CCNNGG 5 cut(s) 148, 265, 407, 426, 1321
BssMI GATC 8 cut(s) 34, 40, 269, 374, 467, 752, 941, 1425
BssNI GRCGYC 1 cut(s) 1185
BssT1I CCWWGG 1 cut(s) 1321
Bst2UI CCWGG 5 cut(s) 19, 150, 267, 408, 1301
Bst4CI ACNGT 2 cut(s) 748, 1019
Bst6I CTCTTC 2 cut(s) 5, 1029
BstACI GRCGYC 1 cut(s) 1185
BstAFI CTTAAG 2 cut(s) 319, 1474
BstC8I GCNNGC 5 cut(s) 79, 650, 954, 1275, 1399
BstDSI CCRYGG 1 cut(s) 1321
BstEII GGTNACC 1 cut(s) 459
BstF5I GGATG 2 cut(s) 417, 893
BstKTI GATC 8 cut(s) 37, 43, 272, 377, 470, 755, 944, 1428
BstMAI GTCTC 3 cut(s) 519, 789, 1192
BstMBI GATC 8 cut(s) 34, 40, 269, 374, 467, 752, 941, 1425
BstMCI CGRYCG 1 cut(s) 1344
BstMWI GCNNNNNNNGC 1 cut(s) 1179
BstNI CCWGG 5 cut(s) 19, 150, 267, 408, 1301
BstPI GGTNACC 1 cut(s) 459
BstSCI CCNGG 8 cut(s) 17, 148, 265, 406, 425, 426, 1299, 1519
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 261, 1234
BstX2I RGATCY 2 cut(s) 467, 752
BstYI RGATCY 2 cut(s) 467, 752
BsuRI GGCC 2 cut(s) 1370, 1519
BtgI CCRYGG 1 cut(s) 1321
BtgZI GCGATG 1 cut(s) 1149
BtsCI GGATG 2 cut(s) 417, 893
BtsI GCAGTG 3 cut(s) 141, 1136, 1392
BtsIMutI CAGTG 4 cut(s) 141, 605, 1136, 1392
Cac8I GCNNGC 5 cut(s) 79, 650, 954, 1275, 1399
CaiI CAGNNNCTG 2 cut(s) 191, 575
Cfr13I GGNCC 5 cut(s) 15, 113, 261, 404, 1517
Cfr9I CCCGGG 1 cut(s) 426
CseI GACGC 1 cut(s) 1174
CsiI ACCWGGT 1 cut(s) 17
Csp6I GTAC 1 cut(s) 982
CviAII CATG 2 cut(s) 839, 1322
CviQI GTAC 1 cut(s) 982
DpnI GATC 8 cut(s) 36, 42, 271, 376, 469, 754, 943, 1427
DpnII GATC 8 cut(s) 34, 40, 269, 374, 467, 752, 941, 1425
Eam1104I CTCTTC 2 cut(s) 5, 1029
EarI CTCTTC 2 cut(s) 5, 1029
EciI GGCGGA 1 cut(s) 1341
Eco130I CCWWGG 1 cut(s) 1321
Eco24I GRGCYC 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 789
Eco47I GGWCC 4 cut(s) 15, 113, 261, 404
Eco57I CTGAAG 2 cut(s) 918, 1530
Eco88I CYCGRG 1 cut(s) 426
Eco91I GGTNACC 1 cut(s) 459
EcoO109I RGGNCCY 1 cut(s) 261
EcoO65I GGTNACC 1 cut(s) 459
EcoRII CCWGG 5 cut(s) 17, 148, 265, 406, 1299
EcoT14I CCWWGG 1 cut(s) 1321
EcoT38I GRGCYC 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 1321
Esp3I CGTCTC 1 cut(s) 1192
FaeI CATG 2 cut(s) 842, 1325
FalI AAGNNNNNCTT 2 cut(s) 118, 150
FaqI GGGAC 1 cut(s) 247
FatI CATG 2 cut(s) 838, 1321
FauI CCCGC 1 cut(s) 1270
FblI GTMKAC 2 cut(s) 1197, 1340
Fnu4HI GCNGC 5 cut(s) 250, 1180, 1183, 1223, 1226
FokI GGATG 2 cut(s) 424, 900
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 5 cut(s) 250, 1180, 1183, 1223, 1226
FspBI CTAG 6 cut(s) 221, 245, 465, 618, 795, 1406
GluI GCNGC 5 cut(s) 250, 1180, 1183, 1223, 1226
GsaI CCCAGC 2 cut(s) 301, 1464
HaeIII GGCC 2 cut(s) 1370, 1519
HapII CCGG 5 cut(s) 97, 427, 1371, 1394, 1520
HgaI GACGC 1 cut(s) 1174
Hin1I GRCGYC 1 cut(s) 1185
Hin1II CATG 2 cut(s) 842, 1325
HincII GTYRAC 3 cut(s) 24, 1198, 1341
HindII GTYRAC 3 cut(s) 24, 1198, 1341
HindIII AAGCTT 1 cut(s) 650
HpaII CCGG 5 cut(s) 97, 427, 1371, 1394, 1520
HphI GGTGA 6 cut(s) 264, 453, 884, 936, 1076, 1298
Hpy166II GTNNAC 4 cut(s) 24, 1198, 1341, 1481
Hpy188III TCNNGA 6 cut(s) 38, 221, 278, 338, 1000, 1160
Hpy8I GTNNAC 4 cut(s) 24, 1198, 1341, 1481
Hpy99I CGWCG 3 cut(s) 1166, 1199, 1312
HpyAV CCTTC 2 cut(s) 25, 1323
HpyCH4III ACNGT 2 cut(s) 748, 1019
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 3 cut(s) 488, 1080, 1222
HpyF10VI GCNNNNNNNGC 1 cut(s) 1179
HpySE526I ACGT 1 cut(s) 596
Hsp92I GRCGYC 1 cut(s) 1185
Hsp92II CATG 2 cut(s) 842, 1325
Kzo9I GATC 8 cut(s) 34, 40, 269, 374, 467, 752, 941, 1425
LmnI GCTCC 5 cut(s) 204, 294, 1126, 1309, 1396
Lsp1109I GCAGC 2 cut(s) 261, 1234
LweI GCATC 4 cut(s) 67, 333, 878, 1406
MabI ACCWGGT 1 cut(s) 17
MaeI CTAG 6 cut(s) 221, 245, 465, 618, 795, 1406
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 4 cut(s) 87, 459, 872, 1019
MalI GATC 8 cut(s) 36, 42, 271, 376, 469, 754, 943, 1427
MboI GATC 8 cut(s) 34, 40, 269, 374, 467, 752, 941, 1425
MboII GAAGA 7 cut(s) 22, 911, 940, 1046, 1137, 1308, 1391
MflI RGATCY 2 cut(s) 467, 752
MhlI GDGCHC 2 cut(s) 209, 1293
MlyI GAGTC 4 cut(s) 95, 178, 326, 587
MmeI TCCRAC 1 cut(s) 730
MseI TTAA 6 cut(s) 182, 320, 644, 654, 695, 1475
MslI CAYNNNNRTG 1 cut(s) 740
MspA1I CMGCKG 2 cut(s) 952, 1225
MspCI CTTAAG 2 cut(s) 319, 1474
MspI CCGG 5 cut(s) 97, 427, 1371, 1394, 1520
MspR9I CCNGG 8 cut(s) 19, 150, 267, 408, 427, 428, 1301, 1521
MvaI CCWGG 5 cut(s) 19, 150, 267, 408, 1301
MwoI GCNNNNNNNGC 1 cut(s) 1179
NciI CCSGG 3 cut(s) 427, 428, 1521
NcoI CCATGG 1 cut(s) 1321
NdeII GATC 8 cut(s) 34, 40, 269, 374, 467, 752, 941, 1425
NlaIII CATG 2 cut(s) 842, 1325
NlaIV GGNNCC 6 cut(s) 206, 263, 754, 844, 1305, 1392
NmuCI GTSAC 3 cut(s) 87, 459, 872
PfeI GAWTC 6 cut(s) 118, 188, 194, 431, 611, 1142
PflFI GACNNNGTC 1 cut(s) 19
PkrI GCNGC 5 cut(s) 251, 1181, 1184, 1224, 1227
PleI GAGTC 4 cut(s) 94, 177, 326, 586
PpsI GAGTC 4 cut(s) 94, 177, 326, 586
PpuMI RGGWCCY 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 261
Psp6I CCWGG 5 cut(s) 17, 148, 265, 406, 1299
PspEI GGTNACC 1 cut(s) 459
PspFI CCCAGC 2 cut(s) 297, 1460
PspGI CCWGG 5 cut(s) 17, 148, 265, 406, 1299
PspN4I GGNNCC 6 cut(s) 206, 263, 754, 844, 1305, 1392
PspPI GGNCC 5 cut(s) 15, 113, 261, 404, 1517
PspPPI RGGWCCY 1 cut(s) 261
PstNI CAGNNNCTG 2 cut(s) 191, 575
PsuI RGATCY 2 cut(s) 467, 752
PsyI GACNNNGTC 1 cut(s) 19
PvuII CAGCTG 1 cut(s) 952
RsaI GTAC 1 cut(s) 983
RsaNI GTAC 1 cut(s) 982
RseI CAYNNNNRTG 1 cut(s) 740
SalI GTCGAC 2 cut(s) 1196, 1339
SaqAI TTAA 6 cut(s) 182, 320, 644, 654, 695, 1475
SatI GCNGC 5 cut(s) 250, 1180, 1183, 1223, 1226
Sau3AI GATC 8 cut(s) 34, 40, 269, 374, 467, 752, 941, 1425
Sau96I GGNCC 5 cut(s) 15, 113, 261, 404, 1517
SchI GAGTC 4 cut(s) 95, 178, 326, 587
ScrFI CCNGG 8 cut(s) 19, 150, 267, 408, 427, 428, 1301, 1521
SduI GDGCHC 2 cut(s) 209, 1293
SexAI ACCWGGT 1 cut(s) 17
SfaNI GCATC 4 cut(s) 67, 333, 878, 1406
SfcI CTRYAG 1 cut(s) 174
SinI GGWCC 4 cut(s) 15, 113, 261, 404
SmaI CCCGGG 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 740
SmlI CTYRAG 2 cut(s) 319, 1474
SmoI CTYRAG 2 cut(s) 319, 1474
SsiI CCGC 6 cut(s) 1179, 1182, 1225, 1277, 1326, 1344
SspMI CTAG 6 cut(s) 221, 245, 465, 618, 795, 1406
StyD4I CCNGG 8 cut(s) 17, 148, 265, 406, 425, 426, 1299, 1519
StyI CCWWGG 1 cut(s) 1321
TaaI ACNGT 2 cut(s) 748, 1019
TaiI ACGT 1 cut(s) 599
TaqI TCGA 6 cut(s) 330, 1161, 1197, 1248, 1340, 1414
TaqII GACCGA 1 cut(s) 130
TauI GCSGC 3 cut(s) 1182, 1185, 1228
TfiI GAWTC 6 cut(s) 118, 188, 194, 431, 611, 1142
Tru1I TTAA 6 cut(s) 182, 320, 644, 654, 695, 1475
Tru9I TTAA 6 cut(s) 182, 320, 644, 654, 695, 1475
TscAI CASTG 4 cut(s) 148, 612, 1136, 1392
TseFI GTSAC 3 cut(s) 87, 459, 872
TseI GCWGC 2 cut(s) 249, 1222
Tsp45I GTSAC 3 cut(s) 87, 459, 872
TspDTI ATGAA 1 cut(s) 1042
TspGWI ACGGA 2 cut(s) 1183, 1296
TspMI CCCGGG 1 cut(s) 426
TspRI CASTG 4 cut(s) 148, 612, 1136, 1392
Tth111I GACNNNGTC 1 cut(s) 19
Vha464I CTTAAG 2 cut(s) 319, 1474
VpaK11BI GGWCC 4 cut(s) 15, 113, 261, 404
XapI RAATTY 2 cut(s) 676, 691
XbaI TCTAGA 1 cut(s) 220
XmaI CCCGGG 1 cut(s) 426
XmiI GTMKAC 2 cut(s) 1197, 1340
XspI CTAG 6 cut(s) 221, 245, 465, 618, 795, 1406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.