Enhancer of polycomb-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G32620 AT4G32620 |
| fragaria_vesca | FvH4_2g30210 FvH4_2g30210 FvH4_2g30210 |
| malus_domestica | MD08G1135600.v1.1 MD15G1114600.v1.1 |
| prunus_persica | Prupe.1G466100_v2.0.a1 Prupe.1G466100_v2.0.a1 |
| pyrus_communis | pycom08g11460 pycom15g10330 |
| rosa_chinensis | RchiOBHm_Chr6g0312671 |
| rosa_laevigata | RLG00000010305 |
| rosa_multiflora | Rmu_ssc0000412.1_g000009 |
| rosa_roxburghii | Rroxscaffold_7G00156580 |
| rosa_rugosa | Rorug06G0398300 |
| rosa_samantha | Rh6AG515600 Rh6BG526900 Rh6CG531800 Rh6DG517900 |
| rosa_wichuraiana | Rw6G044800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 1709, 4680 |
| AccB1I | GGYRCC | 2 cut(s) | 1053, 4724 |
| AccBSI | CCGCTC | 2 cut(s) | 1243, 4730 |
| AccII | CGCG | 2 cut(s) | 1444, 2781 |
| AccIII | TCCGGA | 1 cut(s) | 274 |
| AciI | CCGC | 7 cut(s) | 1243, 2123, 2781, 3508, 4283, 4728, 4835 |
| AcoI | YGGCCR | 3 cut(s) | 1856, 2039, 4147 |
| AcsI | RAATTY | 8 cut(s) | 36, 1595, 1928, 2222, 2290, 2913, 3829, 4256 |
| AcuI | CTGAAG | 6 cut(s) | 137, 1290, 1344, 3819, 3966, 4839 |
| AcvI | CACGTG | 1 cut(s) | 3395 |
| AcyI | GRCGYC | 2 cut(s) | 1054, 4015 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 1014, 1581, 2727, 2844, 3206, 3589, 3656, 4229, 4552 |
| AflII | CTTAAG | 2 cut(s) | 493, 2618 |
| AflIII | ACRYGT | 3 cut(s) | 942, 3394, 3897 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1378, 4885 |
| AhlI | ACTAGT | 3 cut(s) | 209, 461, 2876 |
| Alw21I | GWGCWC | 2 cut(s) | 421, 3330 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 115 |
| Ama87I | CYCGRG | 3 cut(s) | 373, 2496, 2684 |
| Aor13HI | TCCGGA | 1 cut(s) | 274 |
| ApaI | GGGCCC | 2 cut(s) | 3583, 3981 |
| ApoI | RAATTY | 8 cut(s) | 36, 1595, 1928, 2222, 2290, 2913, 3829, 4256 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 887, 919, 4229, 4261 |
| AseI | ATTAAT | 1 cut(s) | 2607 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 618 |
| AspLEI | GCGC | 4 cut(s) | 1056, 1710, 2781, 4681 |
| AsuC2I | CCSGG | 2 cut(s) | 673, 4622 |
| AsuHPI | GGTGA | 8 cut(s) | 512, 696, 1181, 2041, 2153, 2403, 4358, 4422 |
| AvaI | CYCGRG | 3 cut(s) | 373, 2496, 2684 |
| AvaII | GGWCC | 4 cut(s) | 1135, 2463, 2730, 3161 |
| BaeGI | GKGCMC | 3 cut(s) | 3394, 3583, 3981 |
| BalI | TGGCCA | 2 cut(s) | 1858, 2041 |
| BanI | GGYRCC | 2 cut(s) | 1053, 4724 |
| BanII | GRGCYC | 3 cut(s) | 3330, 3583, 3981 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3452, 3484 |
| BauI | CACGAG | 1 cut(s) | 2255 |
| BbrPI | CACGTG | 1 cut(s) | 3395 |
| BbsI | GAAGAC | 3 cut(s) | 789, 1114, 3893 |
| Bbv12I | GWGCWC | 2 cut(s) | 421, 3330 |
| BbvCI | CCTCAGC | 2 cut(s) | 522, 1001 |
| BceAI | ACGGC | 3 cut(s) | 409, 4040, 4134 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 270, 304 |
| BciVI | GTATCC | 1 cut(s) | 1579 |
| BclI | TGATCA | 3 cut(s) | 469, 3931, 4690 |
| BcnI | CCSGG | 2 cut(s) | 673, 4622 |
| BcuI | ACTAGT | 3 cut(s) | 209, 461, 2876 |
| BfaI | CTAG | 7 cut(s) | 210, 462, 1578, 2309, 2844, 2877, 4799 |
| BfmI | CTRYAG | 3 cut(s) | 2976, 2994, 4161 |
| BfoI | RGCGCY | 1 cut(s) | 1057 |
| BfrI | CTTAAG | 2 cut(s) | 493, 2618 |
| BfuI | GTATCC | 1 cut(s) | 1579 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 533 |
| BglII | AGATCT | 2 cut(s) | 53, 4795 |
| BlpI | GCTNAGC | 4 cut(s) | 420, 735, 2967, 4731 |
| BmcAI | AGTACT | 1 cut(s) | 3728 |
| Bme18I | GGWCC | 4 cut(s) | 1135, 2463, 2730, 3161 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1378, 4885 |
| BmeT110I | CYCGRG | 3 cut(s) | 373, 2496, 2684 |
| BmrI | ACTGGG | 2 cut(s) | 861, 3027 |
| BmuI | ACTGGG | 2 cut(s) | 861, 3027 |
| BpiI | GAAGAC | 3 cut(s) | 789, 1114, 3893 |
| BpmI | CTGGAG | 3 cut(s) | 2688, 2853, 4043 |
| Bpu10I | CCTNAGC | 2 cut(s) | 522, 1001 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 420, 735, 2967, 4731 |
| BpuEI | CTTGAG | 4 cut(s) | 179, 501, 644, 3165 |
| BpuMI | CCSGG | 2 cut(s) | 673, 4622 |
| BsaAI | YACGTR | 1 cut(s) | 3395 |
| BsaBI | GATNNNNATC | 2 cut(s) | 474, 967 |
| BsaHI | GRCGYC | 2 cut(s) | 1054, 4015 |
| BsaWI | WCCGGW | 1 cut(s) | 274 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 667, 697, 2317, 2347, 2939, 2969, 3370, 3400 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 1014, 1581, 2727, 2844, 3206, 3589, 3656, 4229, 4552 |
| Bse118I | RCCGGY | 1 cut(s) | 449 |
| Bse1I | ACTGG | 9 cut(s) | 856, 1504, 1720, 2194, 2860, 3033, 3574, 3973, 4636 |
| Bse3DI | GCAATG | 6 cut(s) | 652, 2010, 3194, 3932, 4468, 4809 |
| Bse8I | GATNNNNATC | 2 cut(s) | 474, 967 |
| BseAI | TCCGGA | 1 cut(s) | 274 |
| BseJI | GATNNNNATC | 2 cut(s) | 474, 967 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 1014, 1581, 2727, 2844, 3206, 3589, 3656, 4229, 4552 |
| BseMI | GCAATG | 6 cut(s) | 652, 2010, 3194, 3932, 4468, 4809 |
| BseNI | ACTGG | 9 cut(s) | 856, 1504, 1720, 2194, 2860, 3033, 3574, 3973, 4636 |
| BseRI | GAGGAG | 5 cut(s) | 178, 803, 806, 1814, 3887 |
| BseSI | GKGCMC | 3 cut(s) | 3394, 3583, 3981 |
| BseYI | CCCAGC | 1 cut(s) | 3038 |
| BsgI | GTGCAG | 3 cut(s) | 1632, 2574, 4254 |
| Bsh1236I | CGCG | 2 cut(s) | 1444, 2781 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2785 |
| BshNI | GGYRCC | 2 cut(s) | 1053, 4724 |
| BsiEI | CGRYCG | 1 cut(s) | 2785 |
| BsiHKAI | GWGCWC | 2 cut(s) | 421, 3330 |
| BsiHKCI | CYCGRG | 3 cut(s) | 373, 2496, 2684 |
| BsiSI | CCGG | 6 cut(s) | 275, 450, 673, 1611, 1823, 4622 |
| BslFI | GGGAC | 6 cut(s) | 164, 655, 1094, 1823, 3021, 3466 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 1014, 1581, 2727, 2844, 3206, 3589, 3656, 4229, 4552 |
| BsmBI | CGTCTC | 2 cut(s) | 3782, 4070 |
| BsmFI | GGGAC | 6 cut(s) | 164, 655, 1094, 1823, 3021, 3466 |
| BsmI | GAATGC | 7 cut(s) | 281, 363, 566, 595, 814, 2369, 4044 |
| BsoBI | CYCGRG | 3 cut(s) | 373, 2496, 2684 |
| Bsp120I | GGGCCC | 2 cut(s) | 3579, 3977 |
| Bsp1286I | GDGCHC | 5 cut(s) | 421, 3330, 3394, 3583, 3981 |
| Bsp13I | TCCGGA | 1 cut(s) | 274 |
| Bsp1407I | TGTACA | 1 cut(s) | 75 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 420, 735, 2967, 4731 |
| Bsp19I | CCATGG | 1 cut(s) | 3981 |
| Bsp68I | TCGCGA | 1 cut(s) | 1444 |
| BspACI | CCGC | 7 cut(s) | 1243, 2123, 2781, 3508, 4283, 4728, 4835 |
| BspEI | TCCGGA | 1 cut(s) | 274 |
| BspFNI | CGCG | 2 cut(s) | 1444, 2781 |
| BspHI | TCATGA | 3 cut(s) | 3963, 4693, 4827 |
| BspMAI | CTGCAG | 1 cut(s) | 4165 |
| BspQI | GCTCTTC | 1 cut(s) | 1812 |
| BspT107I | GGYRCC | 2 cut(s) | 1053, 4724 |
| BspTI | CTTAAG | 2 cut(s) | 493, 2618 |
| BsrBI | CCGCTC | 2 cut(s) | 1243, 4730 |
| BsrDI | GCAATG | 6 cut(s) | 652, 2010, 3194, 3932, 4468, 4809 |
| BsrFI | RCCGGY | 1 cut(s) | 449 |
| BsrGI | TGTACA | 1 cut(s) | 75 |
| BsrI | ACTGG | 9 cut(s) | 856, 1504, 1720, 2194, 2860, 3033, 3574, 3973, 4636 |
| BssAI | RCCGGY | 1 cut(s) | 449 |
| BssNI | GRCGYC | 2 cut(s) | 1054, 4015 |
| BssSI | CACGAG | 1 cut(s) | 2255 |
| BssT1I | CCWWGG | 4 cut(s) | 870, 1904, 3981, 4433 |
| Bst2BI | CACGAG | 1 cut(s) | 2255 |
| BstACI | GRCGYC | 2 cut(s) | 1054, 4015 |
| BstAFI | CTTAAG | 2 cut(s) | 493, 2618 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4724 |
| BstAUI | TGTACA | 1 cut(s) | 75 |
| BstBAI | YACGTR | 1 cut(s) | 3395 |
| BstDSI | CCRYGG | 2 cut(s) | 3981, 4205 |
| BstEII | GGTNACC | 1 cut(s) | 2029 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 1579, 2842, 3204, 3587 |
| BstFNI | CGCG | 2 cut(s) | 1444, 2781 |
| BstH2I | RGCGCY | 1 cut(s) | 1057 |
| BstHHI | GCGC | 4 cut(s) | 1056, 1710, 2781, 4681 |
| BstMCI | CGRYCG | 1 cut(s) | 2785 |
| BstNSI | RCATGY | 6 cut(s) | 605, 768, 946, 1754, 3901, 4739 |
| BstPI | GGTNACC | 1 cut(s) | 2029 |
| BstSFI | CTRYAG | 3 cut(s) | 2976, 2994, 4161 |
| BstSLI | GKGCMC | 3 cut(s) | 3394, 3583, 3981 |
| BstUI | CGCG | 2 cut(s) | 1444, 2781 |
| BstV2I | GAAGAC | 3 cut(s) | 789, 1114, 3893 |
| BstX2I | RGATCY | 5 cut(s) | 53, 61, 3549, 3766, 4795 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 4071, 4316 |
| BstYI | RGATCY | 5 cut(s) | 53, 61, 3549, 3766, 4795 |
| BsuI | GTATCC | 1 cut(s) | 1579 |
| BtgI | CCRYGG | 2 cut(s) | 3981, 4205 |
| BtgZI | GCGATG | 3 cut(s) | 896, 3823, 4398 |
| BtsI | GCAGTG | 2 cut(s) | 1943, 3045 |
| BtsIMutI | CAGTG | 8 cut(s) | 30, 1543, 1943, 2644, 2853, 3045, 3581, 4936 |
| BtuMI | TCGCGA | 1 cut(s) | 1444 |
| CaiI | CAGNNNCTG | 1 cut(s) | 115 |
| CciI | TCATGA | 3 cut(s) | 3963, 4693, 4827 |
| CfoI | GCGC | 4 cut(s) | 1056, 1710, 2781, 4681 |
| Cfr10I | RCCGGY | 1 cut(s) | 449 |
| CseI | GACGC | 3 cut(s) | 287, 3621, 4004 |
| DinI | GGCGCC | 1 cut(s) | 1055 |
| DraI | TTTAAA | 2 cut(s) | 1933, 2221 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1378, 4885 |
| EaeI | YGGCCR | 3 cut(s) | 1856, 2039, 4147 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1378, 4885 |
| Ecl136II | GAGCTC | 1 cut(s) | 3328 |
| Eco130I | CCWWGG | 4 cut(s) | 870, 1904, 3981, 4433 |
| Eco147I | AGGCCT | 1 cut(s) | 527 |
| Eco24I | GRGCYC | 3 cut(s) | 3330, 3583, 3981 |
| Eco47I | GGWCC | 4 cut(s) | 1135, 2463, 2730, 3161 |
| Eco53kI | GAGCTC | 1 cut(s) | 3328 |
| Eco57I | CTGAAG | 6 cut(s) | 137, 1290, 1344, 3819, 3966, 4839 |
| Eco72I | CACGTG | 1 cut(s) | 3395 |
| Eco88I | CYCGRG | 3 cut(s) | 373, 2496, 2684 |
| Eco91I | GGTNACC | 1 cut(s) | 2029 |
| EcoICRI | GAGCTC | 1 cut(s) | 3328 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 1579, 2842, 3204, 3587 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2730, 3580, 4210 |
| EcoO65I | GGTNACC | 1 cut(s) | 2029 |
| EcoT14I | CCWWGG | 4 cut(s) | 870, 1904, 3981, 4433 |
| EcoT22I | ATGCAT | 2 cut(s) | 1764, 3600 |
| EcoT38I | GRGCYC | 3 cut(s) | 3330, 3583, 3981 |
| EgeI | GGCGCC | 1 cut(s) | 1055 |
| EheI | GGCGCC | 1 cut(s) | 1055 |
| ErhI | CCWWGG | 4 cut(s) | 870, 1904, 3981, 4433 |
| Esp3I | CGTCTC | 2 cut(s) | 3782, 4070 |
| FaqI | GGGAC | 6 cut(s) | 164, 655, 1094, 1823, 3021, 3466 |
| FauNDI | CATATG | 1 cut(s) | 3916 |
| FbaI | TGATCA | 3 cut(s) | 469, 3931, 4690 |
| FriOI | GRGCYC | 3 cut(s) | 3330, 3583, 3981 |
| FspAI | RTGCGCAY | 1 cut(s) | 4680 |
| FspBI | CTAG | 7 cut(s) | 210, 462, 1578, 2309, 2844, 2877, 4799 |
| FspI | TGCGCA | 2 cut(s) | 1709, 4680 |
| GlaI | GCGC | 4 cut(s) | 1055, 1709, 2780, 4680 |
| GsaI | CCCAGC | 1 cut(s) | 3042 |
| GsuI | CTGGAG | 3 cut(s) | 2688, 2853, 4043 |
| HaeII | RGCGCY | 1 cut(s) | 1057 |
| HapII | CCGG | 6 cut(s) | 275, 450, 673, 1611, 1823, 4622 |
| HgaI | GACGC | 3 cut(s) | 287, 3621, 4004 |
| HhaI | GCGC | 4 cut(s) | 1056, 1710, 2781, 4681 |
| Hin1I | GRCGYC | 2 cut(s) | 1054, 4015 |
| Hin6I | GCGC | 4 cut(s) | 1054, 1708, 2779, 4679 |
| HinP1I | GCGC | 4 cut(s) | 1054, 1708, 2779, 4679 |
| HincII | GTYRAC | 3 cut(s) | 1896, 3501, 4543 |
| HindII | GTYRAC | 3 cut(s) | 1896, 3501, 4543 |
| HindIII | AAGCTT | 6 cut(s) | 237, 341, 2180, 2558, 3431, 4848 |
| HpaI | GTTAAC | 1 cut(s) | 1896 |
| HpaII | CCGG | 6 cut(s) | 275, 450, 673, 1611, 1823, 4622 |
| HphI | GGTGA | 8 cut(s) | 512, 696, 1181, 2041, 2153, 2403, 4358, 4422 |
| Hpy166II | GTNNAC | 8 cut(s) | 266, 1896, 2336, 2453, 3241, 3501, 3939, 4543 |
| Hpy8I | GTNNAC | 8 cut(s) | 266, 1896, 2336, 2453, 3241, 3501, 3939, 4543 |
| Hpy99I | CGWCG | 3 cut(s) | 143, 687, 1458 |
| HpyCH4IV | ACGT | 2 cut(s) | 3394, 4079 |
| HpySE526I | ACGT | 2 cut(s) | 3394, 4079 |
| Hsp92I | GRCGYC | 2 cut(s) | 1054, 4015 |
| HspAI | GCGC | 4 cut(s) | 1054, 1708, 2779, 4679 |
| KasI | GGCGCC | 1 cut(s) | 1053 |
| Kpn2I | TCCGGA | 1 cut(s) | 274 |
| Ksp22I | TGATCA | 3 cut(s) | 469, 3931, 4690 |
| KspAI | GTTAAC | 1 cut(s) | 1896 |
| LguI | GCTCTTC | 1 cut(s) | 1812 |
| LmnI | GCTCC | 6 cut(s) | 2707, 2834, 3055, 3325, 3570, 4105 |
| MaeI | CTAG | 7 cut(s) | 210, 462, 1578, 2309, 2844, 2877, 4799 |
| MaeII | ACGT | 2 cut(s) | 3394, 4079 |
| MbiI | CCGCTC | 2 cut(s) | 1243, 4730 |
| MflI | RGATCY | 5 cut(s) | 53, 61, 3549, 3766, 4795 |
| MhlI | GDGCHC | 5 cut(s) | 421, 3330, 3394, 3583, 3981 |
| MlsI | TGGCCA | 2 cut(s) | 1858, 2041 |
| MluNI | TGGCCA | 2 cut(s) | 1858, 2041 |
| Mly113I | GGCGCC | 1 cut(s) | 1054 |
| MlyI | GAGTC | 6 cut(s) | 452, 1367, 4388, 4874, 4895, 4904 |
| MmeI | TCCRAC | 9 cut(s) | 234, 288, 417, 665, 1362, 1436, 2062, 4075, 4932 |
| Mox20I | TGGCCA | 2 cut(s) | 1858, 2041 |
| Mph1103I | ATGCAT | 2 cut(s) | 1764, 3600 |
| MroI | TCCGGA | 1 cut(s) | 274 |
| MroXI | GAANNNNTTC | 1 cut(s) | 618 |
| MscI | TGGCCA | 2 cut(s) | 1858, 2041 |
| MslI | CAYNNNNRTG | 7 cut(s) | 1062, 2166, 2541, 4069, 4278, 4377, 4454 |
| Msp20I | TGGCCA | 2 cut(s) | 1858, 2041 |
| MspA1I | CMGCKG | 2 cut(s) | 1407, 2588 |
| MspCI | CTTAAG | 2 cut(s) | 493, 2618 |
| MspI | CCGG | 6 cut(s) | 275, 450, 673, 1611, 1823, 4622 |
| Mva1269I | GAATGC | 7 cut(s) | 281, 363, 566, 595, 814, 2369, 4044 |
| MvnI | CGCG | 2 cut(s) | 1444, 2781 |
| NarI | GGCGCC | 1 cut(s) | 1054 |
| NciI | CCSGG | 2 cut(s) | 673, 4622 |
| NcoI | CCATGG | 1 cut(s) | 3981 |
| NdeI | CATATG | 1 cut(s) | 3916 |
| NmuCI | GTSAC | 7 cut(s) | 702, 938, 2029, 2409, 2851, 3365, 4245 |
| NruI | TCGCGA | 1 cut(s) | 1444 |
| NsbI | TGCGCA | 2 cut(s) | 1709, 4680 |
| NsiI | ATGCAT | 2 cut(s) | 1764, 3600 |
| NspI | RCATGY | 6 cut(s) | 605, 768, 946, 1754, 3901, 4739 |
| PaeI | GCATGC | 3 cut(s) | 768, 1754, 4739 |
| PagI | TCATGA | 3 cut(s) | 3963, 4693, 4827 |
| PasI | CCCWGGG | 2 cut(s) | 1008, 4419 |
| PceI | AGGCCT | 1 cut(s) | 527 |
| PciI | ACATGT | 2 cut(s) | 942, 3897 |
| PciSI | GCTCTTC | 1 cut(s) | 1812 |
| PctI | GAATGC | 7 cut(s) | 281, 363, 566, 595, 814, 2369, 4044 |
| PdmI | GAANNNNTTC | 1 cut(s) | 618 |
| PfoI | TCCNGGA | 3 cut(s) | 83, 671, 4620 |
| PleI | GAGTC | 6 cut(s) | 451, 1367, 4388, 4874, 4894, 4904 |
| PluTI | GGCGCC | 1 cut(s) | 1057 |
| PmaCI | CACGTG | 1 cut(s) | 3395 |
| PmlI | CACGTG | 1 cut(s) | 3395 |
| PpsI | GAGTC | 6 cut(s) | 451, 1367, 4388, 4874, 4894, 4904 |
| Ppu21I | YACGTR | 1 cut(s) | 3395 |
| PpuMI | RGGWCCY | 1 cut(s) | 2730 |
| PscI | ACATGT | 2 cut(s) | 942, 3897 |
| PshBI | ATTAAT | 1 cut(s) | 2607 |
| Psp124BI | GAGCTC | 1 cut(s) | 3330 |
| Psp5II | RGGWCCY | 1 cut(s) | 2730 |
| PspCI | CACGTG | 1 cut(s) | 3395 |
| PspEI | GGTNACC | 1 cut(s) | 2029 |
| PspFI | CCCAGC | 1 cut(s) | 3038 |
| PspOMI | GGGCCC | 2 cut(s) | 3579, 3977 |
| PspPPI | RGGWCCY | 1 cut(s) | 2730 |
| PstI | CTGCAG | 1 cut(s) | 4165 |
| PstNI | CAGNNNCTG | 1 cut(s) | 115 |
| PsuI | RGATCY | 5 cut(s) | 53, 61, 3549, 3766, 4795 |
| PvuII | CAGCTG | 2 cut(s) | 1407, 2588 |
| RruI | TCGCGA | 1 cut(s) | 1444 |
| RseI | CAYNNNNRTG | 7 cut(s) | 1062, 2166, 2541, 4069, 4278, 4377, 4454 |
| SacI | GAGCTC | 1 cut(s) | 3330 |
| SapI | GCTCTTC | 1 cut(s) | 1812 |
| ScaI | AGTACT | 1 cut(s) | 3728 |
| SchI | GAGTC | 6 cut(s) | 452, 1367, 4388, 4874, 4895, 4904 |
| SduI | GDGCHC | 5 cut(s) | 421, 3330, 3394, 3583, 3981 |
| SfcI | CTRYAG | 3 cut(s) | 2976, 2994, 4161 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 533 |
| SfoI | GGCGCC | 1 cut(s) | 1055 |
| SinI | GGWCC | 4 cut(s) | 1135, 2463, 2730, 3161 |
| SmiI | ATTTAAAT | 1 cut(s) | 1933 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 1062, 2166, 2541, 4069, 4278, 4377, 4454 |
| SmlI | CTYRAG | 6 cut(s) | 194, 493, 516, 623, 2618, 3180 |
| SmoI | CTYRAG | 6 cut(s) | 194, 493, 516, 623, 2618, 3180 |
| SpeI | ACTAGT | 3 cut(s) | 209, 461, 2876 |
| SphI | GCATGC | 3 cut(s) | 768, 1754, 4739 |
| SseBI | AGGCCT | 1 cut(s) | 527 |
| SsiI | CCGC | 7 cut(s) | 1243, 2123, 2781, 3508, 4283, 4728, 4835 |
| SspDI | GGCGCC | 1 cut(s) | 1053 |
| SspI | AATATT | 1 cut(s) | 4612 |
| SspMI | CTAG | 7 cut(s) | 210, 462, 1578, 2309, 2844, 2877, 4799 |
| SstI | GAGCTC | 1 cut(s) | 3330 |
| StuI | AGGCCT | 1 cut(s) | 527 |
| StyI | CCWWGG | 4 cut(s) | 870, 1904, 3981, 4433 |
| SwaI | ATTTAAAT | 1 cut(s) | 1933 |
| TaiI | ACGT | 2 cut(s) | 3397, 4082 |
| TaqI | TCGA | 3 cut(s) | 830, 947, 1376 |
| TaqII | GACCGA | 2 cut(s) | 3178, 3615 |
| TatI | WGTACW | 7 cut(s) | 75, 848, 1723, 1778, 2735, 3059, 3726 |
| TauI | GCSGC | 1 cut(s) | 4730 |
| TscAI | CASTG | 8 cut(s) | 37, 1543, 1950, 2644, 2860, 3052, 3581, 4936 |
| TseFI | GTSAC | 7 cut(s) | 702, 938, 2029, 2409, 2851, 3365, 4245 |
| Tsp45I | GTSAC | 7 cut(s) | 702, 938, 2029, 2409, 2851, 3365, 4245 |
| TspGWI | ACGGA | 2 cut(s) | 1507, 2470 |
| TspRI | CASTG | 8 cut(s) | 37, 1543, 1950, 2644, 2860, 3052, 3581, 4936 |
| Vha464I | CTTAAG | 2 cut(s) | 493, 2618 |
| VpaK11BI | GGWCC | 4 cut(s) | 1135, 2463, 2730, 3161 |
| VspI | ATTAAT | 1 cut(s) | 2607 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 1579, 2842, 3204, 3587 |
| XapI | RAATTY | 8 cut(s) | 36, 1595, 1928, 2222, 2290, 2913, 3829, 4256 |
| XbaI | TCTAGA | 1 cut(s) | 1577 |
| XceI | RCATGY | 6 cut(s) | 605, 768, 946, 1754, 3901, 4739 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3149 |
| XmnI | GAANNNNTTC | 1 cut(s) | 618 |
| XspI | CTAG | 7 cut(s) | 210, 462, 1578, 2309, 2844, 2877, 4799 |
| ZrmI | AGTACT | 1 cut(s) | 3728 |
| Zsp2I | ATGCAT | 2 cut(s) | 1764, 3600 |