Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002593

Physical Location & Seq

Genomic Coordinates Reverse (-)

54375669 .. 54378257

Gene Structure 2589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0398300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCTTCCATCTCTCTCTCTCCAACAGTTGCAACAGGATACGTTCAAACGAAAACAAAAAGAAGCCCAAGTAGTAGTTCAGCTCCATGCCCATCCATGGCTTTCTCGATCAAATCCTCACTCGGCTCCTCTAAATCATCACTTTTCCAACATGGCTTCTCTCTTCTACAATCATCTTATTCAAATGGGCGCTTCTTCAAATCCCGTCACTACTCTCACTCGGGTGTTTATGCAAGAGCAGCTACTGAGAAGACTCTCTATGATTTTACAGTCAAGGATATCGATGGAAAGGATGTCCCTCTTAGCAAGTTTAAGGGGAAGGTTCTTTTGGTTGTCAACGTTGCTTCAAAATGTGGCTTGACCTCTTCAAATTACTCAGAACTGTCACATGTGTATGAGAAGTACAAAACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAGTTTGGGGGCCAAGAACCGGGATCAAATACAGAAATCAAGCAATTTGCTTGTACACGGTATAAAGCCGAATACCCCATTTTTGATAAGGTTGATGTCAATGGTCCCAGCACAGCTCCGGTTTATCAGTTTCTGAAATCAAGTGTGGGAGGTTTCTTAGGTGACATTGTCAAGTGGAATTTTGAGAAGTTTTTGGTGGACAAGAATGGTAAAGTAGTGGAGAGGTATCCACCAACAACATCACCTTTTCAAATTGAGAAGGATATCCAGAAACTGGTTGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAF1_subA

Protein Analysis

243

Amino Acids

26.74

Weight (kDa)

9.39

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	85 - 145	7.5e-07	Redoxin
GSHPx	PF00255	86 - 194	1e-42	Glutathione peroxidase
AhpC-TSA	PF00578	86 - 149	3.2e-07	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53200 AT1G53200
fragaria_vesca	FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060
malus_domestica	MD03G1237200.v1.1 MD10G1064700.v1.1
prunus_persica	Prupe.4G172200_v2.0.a1
pyrus_communis	pycom03g18310
rosa_chinensis	RchiOBHm_Chr5g0031851 RchiOBHm_Chr6g0312691
rosa_laevigata	RLG00000013275 RLG00000033353
rosa_multiflora	Rmu_sc0002188.1_g000001 Rmu_sc0007517.1_g000001 Rmu_sc0011639.1_g000001 Rmu_sc0012252.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048420
rosa_rugosa	Rorug04G0355200 Rorug05G0128100 Rorug05G0128200 Rorug06G0398300 Rorug06G0398300 Rorug06G0398400 Rorug06G0398500
rosa_samantha	Rh5AG222300 Rh5BG222600 Rh5CG245700 Rh5DG227400 Rh6AG515800 Rh6BG527100 Rh6CG532000 Rh6DG518000
rosa_wichuraiana	Rw5G020260 Rw6G044820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	718
AclI	AACGTT	1 cut(s)	339
AclWI	GGATC	1 cut(s)	475
AcsI	RAATTY	1 cut(s)	622
AfaI	GTAC	2 cut(s)	404, 499
AfiI	CCNNNNNNNGG	3 cut(s)	97, 463, 718
AflIII	ACRYGT	1 cut(s)	388
AgsI	TTSAA	6 cut(s)	47, 183, 199, 348, 369, 695
AjuI	GAANNNNNNNTTGG	4 cut(s)	61, 93, 311, 343
AleI	CACNNNNGTG	1 cut(s)	222
AluBI	AGCT	5 cut(s)	83, 242, 431, 560, 728
AluI	AGCT	5 cut(s)	83, 242, 431, 560, 728
AlwI	GGATC	1 cut(s)	475
AlwNI	CAGNNNCTG	3 cut(s)	245, 577, 718
Ama87I	CYCGRG	1 cut(s)	220
AoxI	GGCC	1 cut(s)	454
ApeKI	GCWGC	2 cut(s)	239, 725
ApoI	RAATTY	1 cut(s)	622
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	454, 548
AsuC2I	CCSGG	1 cut(s)	465
AsuHPI	GGTGA	2 cut(s)	617, 678
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	548
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	3 cut(s)	17, 100, 278
BciVI	GTATCC	2 cut(s)	32, 681
BcnI	CCSGG	1 cut(s)	465
BfaI	CTAG	1 cut(s)	428
BfoI	RGCGCY	1 cut(s)	193
BfuI	GTATCC	2 cut(s)	32, 681
BisI	GCNGC	2 cut(s)	240, 726
BlsI	GCNGC	2 cut(s)	241, 727
Bme1390I	CCNGG	1 cut(s)	465
Bme18I	GGWCC	1 cut(s)	548
BmeT110I	CYCGRG	1 cut(s)	220
BmgT120I	GGNCC	2 cut(s)	454, 548
BmiI	GGNNCC	3 cut(s)	127, 455, 550
BmrFI	CCNGG	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	396
BpuMI	CCSGG	1 cut(s)	465
Bsa29I	ATCGAT	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	562
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 463, 718
Bse1I	ACTGG	1 cut(s)	723
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	2 cut(s)	92, 298
BseLI	CCNNNNNNNGG	3 cut(s)	97, 463, 718
BseMII	CTCAG	2 cut(s)	237, 390
BseNI	ACTGG	1 cut(s)	723
BseRI	GAGGAG	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	251
BseYI	CCCAGC	1 cut(s)	551
BshFI	GGCC	1 cut(s)	456
BshVI	ATCGAT	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	2 cut(s)	464, 563
BslFI	GGGAC	2 cut(s)	281, 534
BslI	CCNNNNNNNGG	3 cut(s)	97, 463, 718
BsmFI	GGGAC	2 cut(s)	281, 534
BsnI	GGCC	1 cut(s)	456
BsoBI	CYCGRG	1 cut(s)	220
Bsp1407I	TGTACA	1 cut(s)	497
Bsp143I	GATC	2 cut(s)	108, 467
Bsp19I	CCATGG	1 cut(s)	96
BspANI	GGCC	1 cut(s)	456
BspCNI	CTCAG	2 cut(s)	238, 389
BspDI	ATCGAT	1 cut(s)	282
BspLI	GGNNCC	3 cut(s)	127, 455, 550
BspPI	GGATC	1 cut(s)	475
BsrGI	TGTACA	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	723
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	108, 467
BssT1I	CCWWGG	1 cut(s)	96
Bst4CI	ACNGT	4 cut(s)	28, 271, 384, 504
Bst6I	CTCTTC	2 cut(s)	168, 370
BstAUI	TGTACA	1 cut(s)	497
BstDEI	CTNAG	4 cut(s)	246, 302, 376, 601
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	2 cut(s)	92, 298
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	111, 470
BstMBI	GATC	2 cut(s)	108, 467
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	463
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	257
Bsu15I	ATCGAT	1 cut(s)	282
BsuI	GTATCC	2 cut(s)	32, 681
BsuRI	GGCC	1 cut(s)	456
BsuTUI	ATCGAT	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	92, 298
CaiI	CAGNNNCTG	3 cut(s)	245, 577, 718
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	2 cut(s)	454, 548
ClaI	ATCGAT	1 cut(s)	282
Csp6I	GTAC	2 cut(s)	403, 498
CviAII	CATG	4 cut(s)	87, 97, 152, 389
CviQI	GTAC	2 cut(s)	403, 498
DdeI	CTNAG	4 cut(s)	246, 302, 376, 601
DpnI	GATC	2 cut(s)	110, 469
DpnII	GATC	2 cut(s)	108, 467
Eam1104I	CTCTTC	2 cut(s)	168, 370
EarI	CTCTTC	2 cut(s)	168, 370
Eco130I	CCWWGG	1 cut(s)	96
Eco32I	GATATC	2 cut(s)	280, 709
Eco47I	GGWCC	1 cut(s)	548
Eco88I	CYCGRG	1 cut(s)	220
EcoRV	GATATC	2 cut(s)	280, 709
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	4 cut(s)	90, 100, 155, 392
FaiI	YATR	8 cut(s)	88, 98, 153, 231, 261, 390, 396, 507
FaqI	GGGAC	2 cut(s)	281, 534
FatI	CATG	4 cut(s)	86, 96, 151, 388
Fnu4HI	GCNGC	2 cut(s)	240, 726
FokI	GGATG	2 cut(s)	79, 305
Fsp4HI	GCNGC	2 cut(s)	240, 726
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	2 cut(s)	240, 726
GsaI	CCCAGC	1 cut(s)	555
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	456
HapII	CCGG	2 cut(s)	464, 563
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	90, 100, 155, 392
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	2 cut(s)	253, 424
HpaII	CCGG	2 cut(s)	464, 563
HphI	GGTGA	2 cut(s)	617, 678
Hpy166II	GTNNAC	3 cut(s)	337, 500, 643
Hpy188I	TCNGA	2 cut(s)	379, 579
Hpy188III	TCNNGA	2 cut(s)	106, 712
Hpy8I	GTNNAC	3 cut(s)	337, 500, 643
HpyAV	CCTTC	2 cut(s)	313, 697
HpyCH4III	ACNGT	4 cut(s)	28, 271, 384, 504
HpyCH4IV	ACGT	2 cut(s)	42, 339
HpyCH4V	TGCA	4 cut(s)	32, 233, 441, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	4 cut(s)	246, 302, 376, 601
HpySE526I	ACGT	2 cut(s)	42, 339
Hsp92II	CATG	4 cut(s)	90, 100, 155, 392
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	108, 467
LmnI	GCTCC	3 cut(s)	88, 131, 565
LpnPI	CCDG	6 cut(s)	21, 477, 565, 576, 704, 725
Lsp1109I	GCAGC	1 cut(s)	251
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	2 cut(s)	42, 339
MaeIII	GTNAC	3 cut(s)	206, 384, 605
MalI	GATC	2 cut(s)	110, 469
MboI	GATC	2 cut(s)	108, 467
MboII	GAAGA	4 cut(s)	155, 187, 262, 357
MluCI	AATT	4 cut(s)	370, 488, 622, 696
MlyI	GAGTC	1 cut(s)	247
MmeI	TCCRAC	2 cut(s)	47, 172
MnlI	CCTC	6 cut(s)	127, 139, 309, 373, 587, 660
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	2 cut(s)	222, 393
MspI	CCGG	2 cut(s)	464, 563
MspR9I	CCNGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	239
NciI	CCSGG	1 cut(s)	465
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	2 cut(s)	108, 467
NlaIII	CATG	4 cut(s)	90, 100, 155, 392
NlaIV	GGNNCC	3 cut(s)	127, 455, 550
NmeAIII	GCCGAG	1 cut(s)	102
NmuCI	GTSAC	3 cut(s)	206, 384, 605
NspI	RCATGY	1 cut(s)	392
OliI	CACNNNNGTG	1 cut(s)	222
PciI	ACATGT	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	424
PflFI	GACNNNGTC	1 cut(s)	611
PflMI	CCANNNNNTGG	1 cut(s)	718
PkrI	GCNGC	2 cut(s)	241, 727
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PscI	ACATGT	1 cut(s)	388
Psp1406I	AACGTT	1 cut(s)	339
PspFI	CCCAGC	1 cut(s)	551
PspN4I	GGNNCC	3 cut(s)	127, 455, 550
PspPI	GGNCC	2 cut(s)	454, 548
PstNI	CAGNNNCTG	3 cut(s)	245, 577, 718
PsyI	GACNNNGTC	1 cut(s)	611
RsaI	GTAC	2 cut(s)	404, 499
RsaNI	GTAC	2 cut(s)	403, 498
RseI	CAYNNNNRTG	2 cut(s)	222, 393
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	2 cut(s)	240, 726
Sau3AI	GATC	2 cut(s)	108, 467
Sau96I	GGNCC	2 cut(s)	454, 548
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	465
SinI	GGWCC	1 cut(s)	548
SmiMI	CAYNNNNRTG	2 cut(s)	222, 393
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
Sse9I	AATT	4 cut(s)	370, 488, 622, 696
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	1 cut(s)	463
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	4 cut(s)	28, 271, 384, 504
TaiI	ACGT	2 cut(s)	45, 342
TaqI	TCGA	2 cut(s)	107, 282
TasI	AATT	4 cut(s)	370, 488, 622, 696
TatI	WGTACW	2 cut(s)	402, 497
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseFI	GTSAC	3 cut(s)	206, 384, 605
TseI	GCWGC	2 cut(s)	239, 725
Tsp45I	GTSAC	3 cut(s)	206, 384, 605
Tth111I	GACNNNGTC	1 cut(s)	611
Van91I	CCANNNNNTGG	1 cut(s)	718
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	1 cut(s)	622
XceI	RCATGY	1 cut(s)	392
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.