RLG00000033353

TAF RNA Polymerase I subunit A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002593
Physical Location & Seq
Forward (+)
26127992 .. 26134184
6193 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033353

Sequence Viewer

Length: 1860 bp
ATGGCTGAATCTCCTATACCAGAAATTCCGATTATTCCCGAAAGCCGGAAAAGAAAGTACACCGACGAGGCAGCACCGTCGAGGCACCTAAAACGCATCGTTTTATCACTAAGCAAGCCGTCGACTCTGCTCGGCATCGGCGCCACAAAACCTAGGGCGGTGCACCGCGCCAAGCTCGAAAAGCTTCTCCGGAAGCTCGTGATTCACCACAACTGGGTCGACGCCAGCGGCGTCCTCAGCGTGTTGCTCGGCGGCGGAGCCAGCGACAGGTCGCCGGCGAACAACCGCTTCATGTATTGGGTTTCGCTGGAAATGGTGGAGCGGTTGTCTGAGATGGAAAAGGAGGAGCGTTTGCCTGGTAATTACTCGAAGGAGGTGTGGATTAAGAATGTGTTTGAAGCTTGGAAGAAGAAGAATGGTAAGATGAAGGCAGAGTTAGAAGAGTACAGACATGCTGTTGAACTTGAGCGCATCTCGCTCTCGCTTGCACAAGGGAATCTGAAGGAGGCCGAAGCAGGAGCTTTCAATCTCATGCAATTAAATGGTTTTCGAAATGACCCTCTTCGAAATATGATTGTCGGATTGACATTCCAGCAATTGTGGTATTCCAAGCTACCAAAAGAGATGCAATGGAGGGAGGCTGACCAGTTTTACACTAGGGAATCAAATGAACTAGTTGCGGGCTCAGAGGGGGATGGCTCTATTAACAGTAACGAGGCTGGTAGTGCCATTCATTGTGATTCAGACACCTCTGTCATGAATGATAAAGTAGAGAATGTACCACCTATTGTTGCTGTTGATGTTGACAGTGGCTTACATAGAGATATCTCTGGGGAGGTTGATGACATGGAAGTAGAAATTTCTCCACCGAAATTTGAGACCCAAAATTTCTATGCAGACTCTGCTGAAAATTCAGAAGATGAAGCTGCTTTATCTGATCATGGTGGTCAAATGCAGTATGCTTTCATTTTCTCTGAACTTGAGGGGTTGGAGTCACTGTTACTGCCCTTACGATTGCCAGAGTCTCTCGATAATCATGAAGATAGGAATATTTTTAATGACTATTACAAGGATGCGGTGAAGTACTTACGACATGCTTTTCACTCTTCACCCCCGGTATTGGTAGCCTTGCATCCTTTGATACAGCTGTTGCTGATTGGAGGTCAAGTTAAAGAGGCCCTAGATGAGATTGAATATTGTTGTAATTTTTCAAATGCAGCGCTGCCTACTCGATTAAGGGCTAGTCTTCTGCAGCAATTTGATTCTAATAACAAACCTGTGCTTTCCACTTGTCTGGAGGAAAACTTAAGGAAGGATCCTACATGTTGCGATTCATTGGAAAAGCTTGTTCTGTTGCATCAAAATGATAATTATAGTCCTGAGTCGCTGCTTGAAATGATAGCTTTGCATTTAGATGCCACCAATGCTGAATGCAACATATGGAGAGAGTATGCTATGTGTTTCCTGAAGCTTTCTCAGTATGAAGAGGACAGGATGTCGGTATGTCTGAATGGAAATGAAGGTGGACATAAACCACAGTACTCTGTTTCTTTCAATAAGACCCCGAAAATATTTATAAAGGGACAATCTGGAAAGAATTGGAGATTGCGCTGTAGATGGTGGTCTACGCGGCACTTCAGCCATGATATACTTGCATCAGAGATGGCAGCAGGTGATTTGGTGCTCTTAACTTACAAAGCAGCTAGTGCAGTGCATATGTATGGATCAGAGTTCTACTACGTTGTGGATGCTCGTTGCTGCTTAGAGAAAGAAAATGAGAGGGACTTGCTCTGTTTTTTGCAAATGCACATTCGAAATTCTGTTCGAATTTATTCGAATTCTCGACAGAGAACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAF1_subA

Protein Analysis

620

Amino Acids

70.5

Weight (kDa)

5.6

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF1_subA PF14929 66 - 583 2.9e-72 TAF RNA Polymerase I subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1577
AarI CACCTGC 1 cut(s) 1661
AasI GACNNNNNNGTC 1 cut(s) 752
Acc36I ACCTGC 1 cut(s) 1661
AccB1I GGYRCC 2 cut(s) 84, 140
AccBSI CCGCTC 1 cut(s) 322
AccI GTMKAC 3 cut(s) 122, 219, 1625
AccII CGCG 2 cut(s) 168, 1630
AccIII TCCGGA 1 cut(s) 189
AclWI GGATC 3 cut(s) 1310, 1323, 1732
AcsI RAATTY 8 cut(s) 24, 858, 872, 886, 910, 1816, 1827, 1837
AcuI CTGAAG 3 cut(s) 521, 1487, 1621
AcyI GRCGYC 3 cut(s) 141, 222, 231
AfaI GTAC 5 cut(s) 59, 446, 780, 1085, 1541
AfeI AGCGCT 1 cut(s) 1221
AfiI CCNNNNNNNGG 4 cut(s) 45, 214, 267, 1120
AflII CTTAAG 1 cut(s) 1306
AflIII ACRYGT 1 cut(s) 1322
AgsI TTSAA 7 cut(s) 398, 461, 526, 1193, 1212, 1394, 1555
AhdI GACNNNNNGTC 1 cut(s) 1495
AhlI ACTAGT 1 cut(s) 673
AjnI CCWGG 1 cut(s) 355
Alw21I GWGCWC 2 cut(s) 165, 1686
Alw26I GTCTC 2 cut(s) 872, 1029
Alw44I GTGCAC 1 cut(s) 161
AlwI GGATC 3 cut(s) 1310, 1323, 1732
AlwNI CAGNNNCTG 1 cut(s) 902
Aor13HI TCCGGA 1 cut(s) 189
Aor51HI AGCGCT 1 cut(s) 1221
AoxI GGCC 2 cut(s) 507, 1176
ApaLI GTGCAC 1 cut(s) 161
ApeKI GCWGC 9 cut(s) 71, 926, 1217, 1222, 1252, 1387, 1667, 1700, 1758
ApoI RAATTY 8 cut(s) 24, 858, 872, 886, 910, 1816, 1827, 1837
Asp700I GAANNNNTTC 2 cut(s) 183, 1831
AspA2I CCTAGG 1 cut(s) 152
AspLEI GCGC 5 cut(s) 143, 170, 471, 1222, 1611
AspS9I GGNCC 1 cut(s) 1177
AsuC2I CCSGG 1 cut(s) 1115
AsuHPI GGTGA 4 cut(s) 197, 1090, 1101, 1685
AsuII TTCGAA 5 cut(s) 550, 565, 1813, 1825, 1835
AvrII CCTAGG 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 165
BaeI ACNNNNGTAYC 2 cut(s) 1133, 1166
BamHI GGATCC 1 cut(s) 1315
BanI GGYRCC 2 cut(s) 84, 140
BanII GRGCYC 1 cut(s) 686
BauI CACGAG 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 1238
Bbv12I GWGCWC 2 cut(s) 165, 1686
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 9 cut(s) 83, 913, 1209, 1229, 1264, 1374, 1679, 1712, 1745
BccI CCATC 4 cut(s) 328, 689, 1611, 1657
BceAI ACGGC 1 cut(s) 103
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BciT130I CCWGG 1 cut(s) 357
BclI TGATCA 1 cut(s) 937
BcnI CCSGG 1 cut(s) 1115
BcoDI GTCTC 2 cut(s) 872, 1029
BcuI ACTAGT 1 cut(s) 673
BfaI CTAG 6 cut(s) 153, 657, 674, 1181, 1242, 1704
BfmI CTRYAG 2 cut(s) 1250, 1612
BfoI RGCGCY 2 cut(s) 144, 1223
BfrI CTTAAG 1 cut(s) 1306
BfuAI ACCTGC 1 cut(s) 1661
BlnI CCTAGG 1 cut(s) 152
BmcAI AGTACT 2 cut(s) 1085, 1541
Bme1390I CCNGG 2 cut(s) 357, 1115
BmeRI GACNNNNNGTC 1 cut(s) 1495
BmgT120I GGNCC 1 cut(s) 1177
BmiI GGNNCC 4 cut(s) 86, 142, 259, 1317
BmrFI CCNGG 2 cut(s) 357, 1115
BmrI ACTGGG 1 cut(s) 223
BmuI ACTGGG 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 1238
BplI GAGNNNNNCTC 2 cut(s) 458, 490
BpmI CTGGAG 1 cut(s) 1316
Bpu10I CCTNAGC 1 cut(s) 236
Bpu14I TTCGAA 5 cut(s) 550, 565, 1813, 1825, 1835
BpuEI CTTGAG 2 cut(s) 485, 1001
BpuMI CCSGG 1 cut(s) 1115
BsaHI GRCGYC 3 cut(s) 141, 222, 231
BsaI GGTCTC 1 cut(s) 872
BsaJI CCNNGG 2 cut(s) 152, 1113
BsaWI WCCGGW 1 cut(s) 189
BsaXI ACNNNNNCTCC 6 cut(s) 311, 341, 983, 1013, 1152, 1182
Bsc4I CCNNNNNNNGG 4 cut(s) 45, 214, 267, 1120
Bse118I RCCGGY 1 cut(s) 274
Bse1I ACTGG 2 cut(s) 218, 646
Bse3DI GCAATG 1 cut(s) 635
BseAI TCCGGA 1 cut(s) 189
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 152, 1113
BseGI GGATG 5 cut(s) 700, 1078, 1132, 1500, 1753
BseLI CCNNNNNNNGG 4 cut(s) 45, 214, 267, 1120
BseMI GCAATG 1 cut(s) 635
BseMII CTCAG 5 cut(s) 250, 321, 699, 1371, 1490
BseNI ACTGG 2 cut(s) 218, 646
BseRI GAGGAG 1 cut(s) 359
BseSI GKGCMC 1 cut(s) 165
BseXI GCAGC 9 cut(s) 83, 913, 1209, 1229, 1264, 1374, 1679, 1712, 1745
BsgI GTGCAG 1 cut(s) 1728
Bsh1236I CGCG 2 cut(s) 168, 1630
BshFI GGCC 2 cut(s) 509, 1178
BshNI GGYRCC 2 cut(s) 84, 140
BsiHKAI GWGCWC 2 cut(s) 165, 1686
BsiSI CCGG 4 cut(s) 46, 190, 275, 1115
BslFI GGGAC 2 cut(s) 1596, 1796
BslI CCNNNNNNNGG 4 cut(s) 45, 214, 267, 1120
BsmAI GTCTC 2 cut(s) 872, 1029
BsmFI GGGAC 2 cut(s) 1596, 1796
BsmI GAATGC 1 cut(s) 1436
BsnI GGCC 2 cut(s) 509, 1178
Bso31I GGTCTC 1 cut(s) 872
Bsp119I TTCGAA 5 cut(s) 550, 565, 1813, 1825, 1835
Bsp1286I GDGCHC 3 cut(s) 165, 686, 1686
Bsp13I TCCGGA 1 cut(s) 189
Bsp143I GATC 3 cut(s) 937, 1315, 1724
BspANI GGCC 2 cut(s) 509, 1178
BspCNI CTCAG 5 cut(s) 249, 322, 698, 1372, 1489
BspEI TCCGGA 1 cut(s) 189
BspFNI CGCG 2 cut(s) 168, 1630
BspHI TCATGA 2 cut(s) 756, 1036
BspLI GGNNCC 4 cut(s) 86, 142, 259, 1317
BspMAI CTGCAG 1 cut(s) 1254
BspMI ACCTGC 1 cut(s) 1661
BspPI GGATC 3 cut(s) 1310, 1323, 1732
BspT104I TTCGAA 5 cut(s) 550, 565, 1813, 1825, 1835
BspT107I GGYRCC 2 cut(s) 84, 140
BspTI CTTAAG 1 cut(s) 1306
BspTNI GGTCTC 1 cut(s) 872
BsrBI CCGCTC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 635
BsrFI RCCGGY 1 cut(s) 274
BsrI ACTGG 2 cut(s) 218, 646
BssAI RCCGGY 1 cut(s) 274
BssECI CCNNGG 2 cut(s) 152, 1113
BssMI GATC 3 cut(s) 937, 1315, 1724
BssNI GRCGYC 3 cut(s) 141, 222, 231
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 152
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 5 cut(s) 78, 710, 809, 999, 1539
Bst6I CTCTTC 4 cut(s) 435, 567, 1111, 1479
BstACI GRCGYC 3 cut(s) 141, 222, 231
BstAFI CTTAAG 1 cut(s) 1306
BstAPI GCANNNNNTGC 2 cut(s) 902, 1706
BstBI TTCGAA 5 cut(s) 550, 565, 1813, 1825, 1835
BstC8I GCNNGC 6 cut(s) 116, 226, 262, 276, 486, 682
BstDEI CTNAG 7 cut(s) 110, 236, 330, 685, 1380, 1476, 1762
BstF5I GGATG 5 cut(s) 700, 1078, 1132, 1500, 1753
BstFNI CGCG 2 cut(s) 168, 1630
BstH2I RGCGCY 2 cut(s) 144, 1223
BstHHI GCGC 5 cut(s) 143, 170, 471, 1222, 1611
BstKTI GATC 3 cut(s) 940, 1318, 1727
BstMAI GTCTC 2 cut(s) 872, 1029
BstMBI GATC 3 cut(s) 937, 1315, 1724
BstMWI GCNNNNNNNGC 8 cut(s) 181, 237, 261, 475, 725, 902, 1424, 1706
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 3 cut(s) 455, 1097, 1326
BstSCI CCNGG 2 cut(s) 355, 1113
BstSFI CTRYAG 2 cut(s) 1250, 1612
BstSLI GKGCMC 1 cut(s) 165
BstUI CGCG 2 cut(s) 168, 1630
BstV1I GCAGC 9 cut(s) 83, 913, 1209, 1229, 1264, 1374, 1679, 1712, 1745
BstV2I GAAGAC 1 cut(s) 1238
BstX2I RGATCY 1 cut(s) 1315
BstXI CCANNNNNNTGG 1 cut(s) 1294
BstYI RGATCY 1 cut(s) 1315
BsuRI GGCC 2 cut(s) 509, 1178
BtsCI GGATG 5 cut(s) 700, 1078, 1132, 1500, 1753
BtsI GCAGTG 1 cut(s) 1716
BtsIMutI CAGTG 3 cut(s) 814, 995, 1716
BveI ACCTGC 1 cut(s) 1661
Cac8I GCNNGC 6 cut(s) 116, 226, 262, 276, 486, 682
CaiI CAGNNNCTG 1 cut(s) 902
CciI TCATGA 2 cut(s) 756, 1036
CfoI GCGC 5 cut(s) 143, 170, 471, 1222, 1611
Cfr10I RCCGGY 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 1177
CseI GACGC 2 cut(s) 220, 230
Csp6I GTAC 5 cut(s) 58, 445, 779, 1084, 1540
CviQI GTAC 5 cut(s) 58, 445, 779, 1084, 1540
DdeI CTNAG 7 cut(s) 110, 236, 330, 685, 1380, 1476, 1762
DinI GGCGCC 1 cut(s) 142
DpnI GATC 3 cut(s) 939, 1317, 1726
DpnII GATC 3 cut(s) 937, 1315, 1724
DrdI GACNNNNNNGTC 1 cut(s) 752
DriI GACNNNNNGTC 1 cut(s) 1495
DseDI GACNNNNNNGTC 1 cut(s) 752
Eam1104I CTCTTC 4 cut(s) 435, 567, 1111, 1479
Eam1105I GACNNNNNGTC 1 cut(s) 1495
EarI CTCTTC 4 cut(s) 435, 567, 1111, 1479
EciI GGCGGA 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 686
Eco31I GGTCTC 1 cut(s) 872
Eco32I GATATC 1 cut(s) 826
Eco47III AGCGCT 1 cut(s) 1221
Eco57I CTGAAG 3 cut(s) 521, 1487, 1621
EcoO109I RGGNCCY 1 cut(s) 1177
EcoRI GAATTC 1 cut(s) 1837
EcoRII CCWGG 1 cut(s) 355
EcoRV GATATC 1 cut(s) 826
EcoT14I CCWWGG 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 686
EgeI GGCGCC 1 cut(s) 142
EheI GGCGCC 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 152
FaqI GGGAC 2 cut(s) 1596, 1796
FauI CCCGC 1 cut(s) 673
FauNDI CATATG 2 cut(s) 1439, 1716
FbaI TGATCA 1 cut(s) 937
FblI GTMKAC 3 cut(s) 122, 219, 1625
FokI GGATG 5 cut(s) 707, 1085, 1119, 1507, 1760
FriOI GRGCYC 1 cut(s) 686
FspBI CTAG 6 cut(s) 153, 657, 674, 1181, 1242, 1704
GlaI GCGC 5 cut(s) 142, 169, 470, 1221, 1610
GsuI CTGGAG 1 cut(s) 1316
HaeII RGCGCY 2 cut(s) 144, 1223
HaeIII GGCC 2 cut(s) 509, 1178
HapII CCGG 4 cut(s) 46, 190, 275, 1115
HgaI GACGC 2 cut(s) 220, 230
HhaI GCGC 5 cut(s) 143, 170, 471, 1222, 1611
Hin1I GRCGYC 3 cut(s) 141, 222, 231
Hin6I GCGC 5 cut(s) 141, 168, 469, 1220, 1609
HinP1I GCGC 5 cut(s) 141, 168, 469, 1220, 1609
HincII GTYRAC 3 cut(s) 123, 220, 805
HindII GTYRAC 3 cut(s) 123, 220, 805
HindIII AAGCTT 4 cut(s) 182, 399, 1343, 1469
HpaII CCGG 4 cut(s) 46, 190, 275, 1115
HphI GGTGA 4 cut(s) 197, 1090, 1101, 1685
Hpy166II GTNNAC 7 cut(s) 60, 123, 163, 220, 805, 1526, 1626
Hpy8I GTNNAC 7 cut(s) 60, 123, 163, 220, 805, 1526, 1626
Hpy99I CGWCG 4 cut(s) 68, 82, 124, 224
HpyAV CCTTC 5 cut(s) 364, 421, 496, 1306, 1514
HpyCH4III ACNGT 5 cut(s) 78, 710, 809, 999, 1539
HpyCH4IV ACGT 1 cut(s) 1740
HpyF10VI GCNNNNNNNGC 8 cut(s) 181, 237, 261, 475, 725, 902, 1424, 1706
HpyF3I CTNAG 7 cut(s) 110, 236, 330, 685, 1380, 1476, 1762
HpySE526I ACGT 1 cut(s) 1740
Hsp92I GRCGYC 3 cut(s) 141, 222, 231
HspAI GCGC 5 cut(s) 141, 168, 469, 1220, 1609
KasI GGCGCC 1 cut(s) 140
Kpn2I TCCGGA 1 cut(s) 189
KroI GCCGGC 1 cut(s) 274
KroNI GCCGGC 1 cut(s) 276
Ksp22I TGATCA 1 cut(s) 937
Kzo9I GATC 3 cut(s) 937, 1315, 1724
LmnI GCTCC 4 cut(s) 257, 319, 346, 518
Lsp1109I GCAGC 9 cut(s) 83, 913, 1209, 1229, 1264, 1374, 1679, 1712, 1745
MaeI CTAG 6 cut(s) 153, 657, 674, 1181, 1242, 1704
MaeII ACGT 1 cut(s) 1740
MaeIII GTNAC 3 cut(s) 710, 993, 999
MalI GATC 3 cut(s) 939, 1317, 1726
MbiI CCGCTC 1 cut(s) 322
MboI GATC 3 cut(s) 937, 1315, 1724
MfeI CAATTG 1 cut(s) 596
MflI RGATCY 1 cut(s) 1315
MhlI GDGCHC 3 cut(s) 165, 686, 1686
Mly113I GGCGCC 1 cut(s) 141
MlyI GAGTC 5 cut(s) 118, 893, 1001, 1031, 1391
MmeI TCCRAC 2 cut(s) 559, 969
MreI CGCCGGCG 1 cut(s) 274
MroI TCCGGA 1 cut(s) 189
MroNI GCCGGC 1 cut(s) 274
MroXI GAANNNNTTC 2 cut(s) 183, 1831
MseI TTAA 8 cut(s) 384, 539, 705, 1056, 1170, 1235, 1307, 1688
MslI CAYNNNNRTG 3 cut(s) 1362, 1413, 1719
MspA1I CMGCKG 2 cut(s) 228, 1147
MspCI CTTAAG 1 cut(s) 1306
MspI CCGG 4 cut(s) 46, 190, 275, 1115
MspR9I CCNGG 2 cut(s) 357, 1115
MunI CAATTG 1 cut(s) 596
Mva1269I GAATGC 1 cut(s) 1436
MvaI CCWGG 1 cut(s) 357
MvnI CGCG 2 cut(s) 168, 1630
MwoI GCNNNNNNNGC 8 cut(s) 181, 237, 261, 475, 725, 902, 1424, 1706
NaeI GCCGGC 1 cut(s) 276
NarI GGCGCC 1 cut(s) 141
NciI CCSGG 1 cut(s) 1115
NdeI CATATG 2 cut(s) 1439, 1716
NdeII GATC 3 cut(s) 937, 1315, 1724
NgoMIV GCCGGC 1 cut(s) 274
NlaIV GGNNCC 4 cut(s) 86, 142, 259, 1317
NmeAIII GCCGAG 2 cut(s) 111, 228
NmuCI GTSAC 1 cut(s) 993
NspI RCATGY 3 cut(s) 455, 1097, 1326
NspV TTCGAA 5 cut(s) 550, 565, 1813, 1825, 1835
PagI TCATGA 2 cut(s) 756, 1036
PaqCI CACCTGC 1 cut(s) 1661
PciI ACATGT 1 cut(s) 1322
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 1 cut(s) 1436
PdiI GCCGGC 1 cut(s) 276
PdmI GAANNNNTTC 2 cut(s) 183, 1831
PfeI GAWTC 7 cut(s) 8, 202, 496, 662, 740, 1262, 1331
PleI GAGTC 5 cut(s) 118, 893, 1000, 1030, 1390
PluTI GGCGCC 1 cut(s) 144
PpsI GAGTC 5 cut(s) 118, 893, 1000, 1030, 1390
PscI ACATGT 1 cut(s) 1322
PsiI TTATAA 1 cut(s) 1577
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 4 cut(s) 86, 142, 259, 1317
PspPI GGNCC 1 cut(s) 1177
PstI CTGCAG 1 cut(s) 1254
PstNI CAGNNNCTG 1 cut(s) 902
PsuI RGATCY 1 cut(s) 1315
PvuII CAGCTG 1 cut(s) 1147
RsaI GTAC 5 cut(s) 59, 446, 780, 1085, 1541
RsaNI GTAC 5 cut(s) 58, 445, 779, 1084, 1540
RseI CAYNNNNRTG 3 cut(s) 1362, 1413, 1719
SalI GTCGAC 2 cut(s) 121, 218
SaqAI TTAA 8 cut(s) 384, 539, 705, 1056, 1170, 1235, 1307, 1688
Sau3AI GATC 3 cut(s) 937, 1315, 1724
Sau96I GGNCC 1 cut(s) 1177
ScaI AGTACT 2 cut(s) 1085, 1541
SchI GAGTC 5 cut(s) 118, 893, 1001, 1031, 1391
ScrFI CCNGG 2 cut(s) 357, 1115
SduI GDGCHC 3 cut(s) 165, 686, 1686
SfcI CTRYAG 2 cut(s) 1250, 1612
SfoI GGCGCC 1 cut(s) 142
SfuI TTCGAA 5 cut(s) 550, 565, 1813, 1825, 1835
SgrAI CRCCGGYG 1 cut(s) 274
SmiMI CAYNNNNRTG 3 cut(s) 1362, 1413, 1719
SmlI CTYRAG 3 cut(s) 464, 980, 1306
SmoI CTYRAG 3 cut(s) 464, 980, 1306
SpeI ACTAGT 1 cut(s) 673
SspDI GGCGCC 1 cut(s) 140
SspI AATATT 3 cut(s) 1051, 1196, 1572
SspMI CTAG 6 cut(s) 153, 657, 674, 1181, 1242, 1704
StyD4I CCNGG 2 cut(s) 355, 1113
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 5 cut(s) 78, 710, 809, 999, 1539
TaiI ACGT 1 cut(s) 1743
TatI WGTACW 4 cut(s) 57, 444, 1083, 1539
TauI GCSGC 3 cut(s) 231, 255, 1633
TfiI GAWTC 7 cut(s) 8, 202, 496, 662, 740, 1262, 1331
Tru1I TTAA 8 cut(s) 384, 539, 705, 1056, 1170, 1235, 1307, 1688
Tru9I TTAA 8 cut(s) 384, 539, 705, 1056, 1170, 1235, 1307, 1688
TscAI CASTG 3 cut(s) 814, 1002, 1716
TseFI GTSAC 1 cut(s) 993
TseI GCWGC 9 cut(s) 71, 926, 1217, 1222, 1252, 1387, 1667, 1700, 1758
Tsp45I GTSAC 1 cut(s) 993
TspRI CASTG 3 cut(s) 814, 1002, 1716
Vha464I CTTAAG 1 cut(s) 1306
VneI GTGCAC 1 cut(s) 161
XapI RAATTY 8 cut(s) 24, 858, 872, 886, 910, 1816, 1827, 1837
XceI RCATGY 3 cut(s) 455, 1097, 1326
XmaJI CCTAGG 1 cut(s) 152
XmiI GTMKAC 3 cut(s) 122, 219, 1625
XmnI GAANNNNTTC 2 cut(s) 183, 1831
XspI CTAG 6 cut(s) 153, 657, 674, 1181, 1242, 1704
ZrmI AGTACT 2 cut(s) 1085, 1541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.