Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002188.1

Orthogroup ID

OG0002593

Physical Location & Seq

Genomic Coordinates Reverse (-)

2122 .. 8822

Gene Structure 6701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002188.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1836 bp

atggctgaatctcccataccagaaattccgattattcccgaaagccggaaaagaaagtacaccgacgacggcggcgaggcagcactgtcggggcacctaaaacgcatcgttttatcactaagcaagccgtcgactctgctcggcatcggcgccacaaaacctaggtcggtgcaccgcgccaagctcgaaaagcttctccggaagctcgtgattcaccacaactgggtcgacgccagcggcgtcctcagcgtgttgctcggcggcggagccagcgacaggtcgccggcgaacaaccgcttcatgtattggaggttgtctgagatggaaaaggaggagcgtttacctggtaatttctccaaggaggtgtggattaagaatgtgtttgaatcttgggagaagaagaatggtaagatgaaggcagagttagaagagtacagacatgctgttgaacttgagcgagtctcgctctcgcttgcaaaagggaatcttatggaggctgaagctggtgctttcggtctcatgcaaccaaatggttttcgaaatgaccctcttcgaaatatgattgtcggattgacattccagaaattgtggtattccaagctcccaaaagagatgcagtggagggaggctgaccagttttacactagggaatcaaatgaactagttgcagcctcagaggggcatggctctattaacagtaacgaggctggtagcgccattcattgtgattcagacacctctgtcatgaatgataaagtagagaatgtaccacctattgttgctgttgatgctgacagtggcttacatagagagatctctgtggaggttgttgacatggaagtagaaatttctccaccgaaatttgagacccaaaatttctatgcggactctgctgaaaattcagaagatgaagctgctttatctgatcatggtggtcaaatgcagtatgctcccattttctctgaacttgtggatttgtcattcataatgccagaggggttggagtcactgttactgccaatacgattgccagagtctctcgataatcatgaagataagaatatttttaatgactattacaaggatgcggtgaagtacttacgacatgctcttcactcttcacccccggtattggtagccttacatcctttgatacagctgttgctgattggaggtcaagttaaagaggccctagatgagattgaatattgttgtaatgtttcaaacacagcgctgcctactcgattaaggtctagtcttctgcagcaatttgattctaataacaaacctgtgctttccacttgtctggaggaaaacttaaggaaggatcctacatgttccgattcattggaaaagcttgttctgttgcatcaaaatgatgattatagtcctgagtccctgcttgaaatgatagctttgcatttagatgccaccaatgctgaatacaacatatggagagagtatgctatgtgtttcctgaagctttctcagtatgaagaggacaggatgtcggtgtgtctgaatggaaatgaaggtggacataaaccacggtactctgtttctttcaataagaccccgaaaatatttataaagggacaatctggaaagaattggaaattgcgctgtagatggtggtctacgcggcacttcagccatgatattcttgcatcagagattgcagcaggtgatttggagctcttaacttacaaagcagcgagtgcagtgcatatgtatggatcagagttctattacgttgtggatgctctttgctgcttagagaaagaaattttggatgccttaacgatcaccaaattggctgaaattttgcaaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAF1_subA

Protein Analysis

611

Amino Acids

68.96

Weight (kDa)

5.37

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53200 AT1G53200
fragaria_vesca	FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060
malus_domestica	MD03G1237200.v1.1 MD10G1064700.v1.1
prunus_persica	Prupe.4G172200_v2.0.a1
pyrus_communis	pycom03g18310
rosa_chinensis	RchiOBHm_Chr5g0031851 RchiOBHm_Chr6g0312691
rosa_laevigata	RLG00000013275 RLG00000033353
rosa_multiflora	Rmu_sc0002188.1_g000001 Rmu_sc0007517.1_g000001 Rmu_sc0011639.1_g000001 Rmu_sc0012252.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048420
rosa_rugosa	Rorug04G0355200 Rorug05G0128100 Rorug05G0128200 Rorug06G0398300 Rorug06G0398300 Rorug06G0398400 Rorug06G0398500
rosa_samantha	Rh5AG222300 Rh5BG222600 Rh5CG245700 Rh5DG227400 Rh6AG515800 Rh6BG527100 Rh6CG532000 Rh6DG518000
rosa_wichuraiana	Rw5G020260 Rw6G044820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1589
AarI	CACCTGC	1 cut(s)	1673
AasI	GACNNNNNNGTC	1 cut(s)	740
Acc36I	ACCTGC	1 cut(s)	1673
AccB1I	GGYRCC	2 cut(s)	93, 149
AccI	GTMKAC	3 cut(s)	131, 228, 1637
AccII	CGCG	2 cut(s)	177, 1642
AccIII	TCCGGA	1 cut(s)	198
AciI	CCGC	9 cut(s)	72, 175, 237, 261, 264, 295, 884, 1088, 1642
AclWI	GGATC	3 cut(s)	1322, 1335, 1744
AcsI	RAATTY	7 cut(s)	24, 846, 860, 874, 898, 1785, 1821
AcuI	CTGAAG	3 cut(s)	519, 1499, 1633
AcyI	GRCGYC	3 cut(s)	150, 231, 240
AfaI	GTAC	5 cut(s)	59, 434, 768, 1097, 1553
AfeI	AGCGCT	1 cut(s)	1233
AfiI	CCNNNNNNNGG	5 cut(s)	45, 223, 276, 678, 1132
AflII	CTTAAG	1 cut(s)	1318
AflIII	ACRYGT	1 cut(s)	1334
AgsI	TTSAA	6 cut(s)	386, 449, 1205, 1224, 1406, 1567
AhdI	GACNNNNNGTC	1 cut(s)	1507
AhlI	ACTAGT	1 cut(s)	661
AjnI	CCWGG	1 cut(s)	343
AjuI	GAANNNNNNNTTGG	2 cut(s)	1772, 1804
Alw21I	GWGCWC	2 cut(s)	174, 1698
Alw26I	GTCTC	4 cut(s)	466, 521, 860, 1041
Alw44I	GTGCAC	1 cut(s)	170
AlwI	GGATC	3 cut(s)	1322, 1335, 1744
Aor13HI	TCCGGA	1 cut(s)	198
Aor51HI	AGCGCT	1 cut(s)	1233
AoxI	GGCC	1 cut(s)	1188
ApaLI	GTGCAC	1 cut(s)	170
ApeKI	GCWGC	8 cut(s)	80, 668, 914, 1234, 1264, 1679, 1712, 1770
ApoI	RAATTY	7 cut(s)	24, 846, 860, 874, 898, 1785, 1821
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Asp700I	GAANNNNTTC	1 cut(s)	192
AspA2I	CCTAGG	1 cut(s)	161
AspLEI	GCGC	5 cut(s)	152, 179, 716, 1234, 1623
AspS9I	GGNCC	1 cut(s)	1189
AsuC2I	CCSGG	1 cut(s)	1127
AsuHPI	GGTGA	5 cut(s)	206, 1102, 1113, 1697, 1798
AsuII	TTCGAA	2 cut(s)	538, 553
AvrII	CCTAGG	1 cut(s)	161
BaeGI	GKGCMC	2 cut(s)	96, 174
BaeI	ACNNNNGTAYC	2 cut(s)	1145, 1178
BamHI	GGATCC	1 cut(s)	1327
BanI	GGYRCC	2 cut(s)	93, 149
BanII	GRGCYC	1 cut(s)	1698
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	1250
Bbv12I	GWGCWC	2 cut(s)	174, 1698
BbvCI	CCTCAGC	1 cut(s)	245
BbvI	GCAGC	8 cut(s)	92, 680, 901, 1221, 1276, 1691, 1724, 1757
BccI	CCATC	2 cut(s)	316, 1623
BceAI	ACGGC	2 cut(s)	85, 112
BcgI	CGANNNNNNTGC	4 cut(s)	69, 103, 1705, 1739
BciT130I	CCWGG	1 cut(s)	345
BclI	TGATCA	1 cut(s)	925
BcnI	CCSGG	1 cut(s)	1127
BcoDI	GTCTC	4 cut(s)	466, 521, 860, 1041
BcuI	ACTAGT	1 cut(s)	661
BfaI	CTAG	5 cut(s)	162, 645, 662, 1193, 1254
BfmI	CTRYAG	2 cut(s)	1262, 1624
BfoI	RGCGCY	3 cut(s)	153, 717, 1235
BfrI	CTTAAG	1 cut(s)	1318
BfuAI	ACCTGC	1 cut(s)	1673
BglII	AGATCT	1 cut(s)	813
BlnI	CCTAGG	1 cut(s)	161
BmcAI	AGTACT	1 cut(s)	1097
Bme1390I	CCNGG	2 cut(s)	345, 1127
BmeRI	GACNNNNNGTC	1 cut(s)	1507
BmgT120I	GGNCC	1 cut(s)	1189
BmiI	GGNNCC	4 cut(s)	95, 151, 268, 1329
BmrFI	CCNGG	2 cut(s)	345, 1127
BmrI	ACTGGG	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	1250
BplI	GAGNNNNNCTC	4 cut(s)	446, 478, 450, 482
BpmI	CTGGAG	1 cut(s)	1328
Bpu10I	CCTNAGC	1 cut(s)	245
Bpu14I	TTCGAA	2 cut(s)	538, 553
BpuEI	CTTGAG	1 cut(s)	473
BpuMI	CCSGG	1 cut(s)	1127
BsaHI	GRCGYC	3 cut(s)	150, 231, 240
BsaI	GGTCTC	2 cut(s)	521, 860
BsaJI	CCNNGG	4 cut(s)	161, 357, 1125, 1547
BsaWI	WCCGGW	1 cut(s)	198
BsaXI	ACNNNNNCTCC	4 cut(s)	995, 1025, 1164, 1194
Bsc4I	CCNNNNNNNGG	5 cut(s)	45, 223, 276, 678, 1132
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	2 cut(s)	227, 634
BseAI	TCCGGA	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	4 cut(s)	161, 357, 1125, 1547
BseGI	GGATG	5 cut(s)	1090, 1144, 1512, 1765, 1798
BseLI	CCNNNNNNNGG	5 cut(s)	45, 223, 276, 678, 1132
BseMII	CTCAG	5 cut(s)	259, 309, 687, 1383, 1502
BseNI	ACTGG	2 cut(s)	227, 634
BseRI	GAGGAG	1 cut(s)	347
BseSI	GKGCMC	2 cut(s)	96, 174
BseXI	GCAGC	8 cut(s)	92, 680, 901, 1221, 1276, 1691, 1724, 1757
BsgI	GTGCAG	1 cut(s)	1740
Bsh1236I	CGCG	2 cut(s)	177, 1642
BshFI	GGCC	1 cut(s)	1190
BshNI	GGYRCC	2 cut(s)	93, 149
BsiHKAI	GWGCWC	2 cut(s)	174, 1698
BsiSI	CCGG	4 cut(s)	46, 199, 284, 1127
BslFI	GGGAC	2 cut(s)	1381, 1608
BslI	CCNNNNNNNGG	5 cut(s)	45, 223, 276, 678, 1132
BsmAI	GTCTC	4 cut(s)	466, 521, 860, 1041
BsmFI	GGGAC	2 cut(s)	1381, 1608
BsnI	GGCC	1 cut(s)	1190
Bso31I	GGTCTC	2 cut(s)	521, 860
Bsp119I	TTCGAA	2 cut(s)	538, 553
Bsp1286I	GDGCHC	3 cut(s)	96, 174, 1698
Bsp13I	TCCGGA	1 cut(s)	198
Bsp143I	GATC	5 cut(s)	813, 925, 1327, 1736, 1803
BspACI	CCGC	9 cut(s)	72, 175, 237, 261, 264, 295, 884, 1088, 1642
BspANI	GGCC	1 cut(s)	1190
BspCNI	CTCAG	5 cut(s)	258, 310, 686, 1384, 1501
BspEI	TCCGGA	1 cut(s)	198
BspFNI	CGCG	2 cut(s)	177, 1642
BspHI	TCATGA	2 cut(s)	744, 1048
BspLI	GGNNCC	4 cut(s)	95, 151, 268, 1329
BspMAI	CTGCAG	1 cut(s)	1266
BspMI	ACCTGC	1 cut(s)	1673
BspPI	GGATC	3 cut(s)	1322, 1335, 1744
BspQI	GCTCTTC	1 cut(s)	1116
BspT104I	TTCGAA	2 cut(s)	538, 553
BspT107I	GGYRCC	2 cut(s)	93, 149
BspTI	CTTAAG	1 cut(s)	1318
BspTNI	GGTCTC	2 cut(s)	521, 860
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	227, 634
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	4 cut(s)	161, 357, 1125, 1547
BssMI	GATC	5 cut(s)	813, 925, 1327, 1736, 1803
BssNI	GRCGYC	3 cut(s)	150, 231, 240
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	2 cut(s)	161, 357
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	5 cut(s)	87, 698, 797, 1011, 1551
Bst6I	CTCTTC	5 cut(s)	423, 555, 1116, 1123, 1491
BstACI	GRCGYC	3 cut(s)	150, 231, 240
BstAFI	CTTAAG	1 cut(s)	1318
BstAPI	GCANNNNNTGC	1 cut(s)	1718
BstBI	TTCGAA	2 cut(s)	538, 553
BstC8I	GCNNGC	5 cut(s)	125, 235, 271, 285, 474
BstDEI	CTNAG	7 cut(s)	119, 245, 318, 673, 1392, 1488, 1774
BstDSI	CCRYGG	1 cut(s)	1547
BstF5I	GGATG	5 cut(s)	1090, 1144, 1512, 1765, 1798
BstFNI	CGCG	2 cut(s)	177, 1642
BstH2I	RGCGCY	3 cut(s)	153, 717, 1235
BstHHI	GCGC	5 cut(s)	152, 179, 716, 1234, 1623
BstKTI	GATC	5 cut(s)	816, 928, 1330, 1739, 1806
BstMAI	GTCTC	4 cut(s)	466, 521, 860, 1041
BstMBI	GATC	5 cut(s)	813, 925, 1327, 1736, 1803
BstMWI	GCNNNNNNNGC	9 cut(s)	190, 246, 270, 463, 713, 788, 890, 1436, 1718
BstNI	CCWGG	1 cut(s)	345
BstNSI	RCATGY	3 cut(s)	443, 1109, 1338
BstSCI	CCNGG	2 cut(s)	343, 1125
BstSFI	CTRYAG	2 cut(s)	1262, 1624
BstSLI	GKGCMC	2 cut(s)	96, 174
BstUI	CGCG	2 cut(s)	177, 1642
BstV1I	GCAGC	8 cut(s)	92, 680, 901, 1221, 1276, 1691, 1724, 1757
BstV2I	GAAGAC	1 cut(s)	1250
BstX2I	RGATCY	2 cut(s)	813, 1327
BstXI	CCANNNNNNTGG	1 cut(s)	1306
BstYI	RGATCY	2 cut(s)	813, 1327
BsuRI	GGCC	1 cut(s)	1190
BtgI	CCRYGG	1 cut(s)	1547
BtsCI	GGATG	5 cut(s)	1090, 1144, 1512, 1765, 1798
BtsI	GCAGTG	2 cut(s)	623, 1728
BtsIMutI	CAGTG	5 cut(s)	83, 623, 802, 1007, 1728
BveI	ACCTGC	1 cut(s)	1673
Cac8I	GCNNGC	5 cut(s)	125, 235, 271, 285, 474
CciI	TCATGA	2 cut(s)	744, 1048
CfoI	GCGC	5 cut(s)	152, 179, 716, 1234, 1623
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	1189
CseI	GACGC	2 cut(s)	229, 239
CsiI	ACCWGGT	1 cut(s)	343
Csp6I	GTAC	5 cut(s)	58, 433, 767, 1096, 1552
CviQI	GTAC	5 cut(s)	58, 433, 767, 1096, 1552
DdeI	CTNAG	7 cut(s)	119, 245, 318, 673, 1392, 1488, 1774
DinI	GGCGCC	1 cut(s)	151
DpnI	GATC	5 cut(s)	815, 927, 1329, 1738, 1805
DpnII	GATC	5 cut(s)	813, 925, 1327, 1736, 1803
DrdI	GACNNNNNNGTC	1 cut(s)	740
DriI	GACNNNNNGTC	1 cut(s)	1507
DseDI	GACNNNNNNGTC	1 cut(s)	740
Eam1104I	CTCTTC	5 cut(s)	423, 555, 1116, 1123, 1491
Eam1105I	GACNNNNNGTC	1 cut(s)	1507
EarI	CTCTTC	5 cut(s)	423, 555, 1116, 1123, 1491
EciI	GGCGGA	1 cut(s)	279
Ecl136II	GAGCTC	1 cut(s)	1696
Eco130I	CCWWGG	2 cut(s)	161, 357
Eco24I	GRGCYC	1 cut(s)	1698
Eco31I	GGTCTC	2 cut(s)	521, 860
Eco47III	AGCGCT	1 cut(s)	1233
Eco53kI	GAGCTC	1 cut(s)	1696
Eco57I	CTGAAG	3 cut(s)	519, 1499, 1633
EcoICRI	GAGCTC	1 cut(s)	1696
EcoO109I	RGGNCCY	1 cut(s)	1189
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	2 cut(s)	161, 357
EcoT38I	GRGCYC	1 cut(s)	1698
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
ErhI	CCWWGG	2 cut(s)	161, 357
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FaqI	GGGAC	2 cut(s)	1381, 1608
FauNDI	CATATG	2 cut(s)	1451, 1728
FbaI	TGATCA	1 cut(s)	925
FblI	GTMKAC	3 cut(s)	131, 228, 1637
FokI	GGATG	5 cut(s)	1097, 1131, 1519, 1772, 1805
FriOI	GRGCYC	1 cut(s)	1698
FspBI	CTAG	5 cut(s)	162, 645, 662, 1193, 1254
GlaI	GCGC	5 cut(s)	151, 178, 715, 1233, 1622
GsuI	CTGGAG	1 cut(s)	1328
HaeII	RGCGCY	3 cut(s)	153, 717, 1235
HaeIII	GGCC	1 cut(s)	1190
HapII	CCGG	4 cut(s)	46, 199, 284, 1127
HgaI	GACGC	2 cut(s)	229, 239
HhaI	GCGC	5 cut(s)	152, 179, 716, 1234, 1623
Hin1I	GRCGYC	3 cut(s)	150, 231, 240
Hin6I	GCGC	5 cut(s)	150, 177, 714, 1232, 1621
HinP1I	GCGC	5 cut(s)	150, 177, 714, 1232, 1621
HincII	GTYRAC	3 cut(s)	132, 229, 832
HindII	GTYRAC	3 cut(s)	132, 229, 832
HindIII	AAGCTT	3 cut(s)	191, 1355, 1481
HpaII	CCGG	4 cut(s)	46, 199, 284, 1127
HphI	GGTGA	5 cut(s)	206, 1102, 1113, 1697, 1798
Hpy166II	GTNNAC	8 cut(s)	60, 132, 172, 229, 341, 832, 1538, 1638
Hpy8I	GTNNAC	8 cut(s)	60, 132, 172, 229, 341, 832, 1538, 1638
Hpy99I	CGWCG	4 cut(s)	68, 71, 133, 233
HpyAV	CCTTC	3 cut(s)	409, 1318, 1526
HpyCH4III	ACNGT	5 cut(s)	87, 698, 797, 1011, 1551
HpyCH4IV	ACGT	1 cut(s)	1752
HpyF10VI	GCNNNNNNNGC	9 cut(s)	190, 246, 270, 463, 713, 788, 890, 1436, 1718
HpyF3I	CTNAG	7 cut(s)	119, 245, 318, 673, 1392, 1488, 1774
HpySE526I	ACGT	1 cut(s)	1752
Hsp92I	GRCGYC	3 cut(s)	150, 231, 240
HspAI	GCGC	5 cut(s)	150, 177, 714, 1232, 1621
KasI	GGCGCC	1 cut(s)	149
Kpn2I	TCCGGA	1 cut(s)	198
KroI	GCCGGC	1 cut(s)	283
KroNI	GCCGGC	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	925
Kzo9I	GATC	5 cut(s)	813, 925, 1327, 1736, 1803
LguI	GCTCTTC	1 cut(s)	1116
LmnI	GCTCC	5 cut(s)	266, 334, 606, 955, 1693
Lsp1109I	GCAGC	8 cut(s)	92, 680, 901, 1221, 1276, 1691, 1724, 1757
MabI	ACCWGGT	1 cut(s)	343
MaeI	CTAG	5 cut(s)	162, 645, 662, 1193, 1254
MaeII	ACGT	1 cut(s)	1752
MaeIII	GTNAC	3 cut(s)	698, 1005, 1011
MalI	GATC	5 cut(s)	815, 927, 1329, 1738, 1805
MboI	GATC	5 cut(s)	813, 925, 1327, 1736, 1803
MflI	RGATCY	2 cut(s)	813, 1327
MhlI	GDGCHC	3 cut(s)	96, 174, 1698
Mly113I	GGCGCC	1 cut(s)	150
MlyI	GAGTC	6 cut(s)	127, 468, 881, 1013, 1043, 1403
MmeI	TCCRAC	2 cut(s)	547, 981
MreI	CGCCGGCG	1 cut(s)	283
MroI	TCCGGA	1 cut(s)	198
MroNI	GCCGGC	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	8 cut(s)	372, 693, 1068, 1182, 1247, 1319, 1700, 1799
MslI	CAYNNNNRTG	3 cut(s)	1374, 1425, 1731
MspA1I	CMGCKG	2 cut(s)	237, 1159
MspCI	CTTAAG	1 cut(s)	1318
MspI	CCGG	4 cut(s)	46, 199, 284, 1127
MspR9I	CCNGG	2 cut(s)	345, 1127
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	2 cut(s)	177, 1642
MwoI	GCNNNNNNNGC	9 cut(s)	190, 246, 270, 463, 713, 788, 890, 1436, 1718
NaeI	GCCGGC	1 cut(s)	285
NarI	GGCGCC	1 cut(s)	150
NciI	CCSGG	1 cut(s)	1127
NdeI	CATATG	2 cut(s)	1451, 1728
NdeII	GATC	5 cut(s)	813, 925, 1327, 1736, 1803
NgoMIV	GCCGGC	1 cut(s)	283
NlaIV	GGNNCC	4 cut(s)	95, 151, 268, 1329
NmeAIII	GCCGAG	2 cut(s)	120, 237
NmuCI	GTSAC	1 cut(s)	1005
NspI	RCATGY	3 cut(s)	443, 1109, 1338
NspV	TTCGAA	2 cut(s)	538, 553
PagI	TCATGA	2 cut(s)	744, 1048
PaqCI	CACCTGC	1 cut(s)	1673
PciI	ACATGT	1 cut(s)	1334
PciSI	GCTCTTC	1 cut(s)	1116
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 237
PdiI	GCCGGC	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	8 cut(s)	8, 211, 386, 484, 650, 728, 1274, 1343
PleI	GAGTC	6 cut(s)	127, 467, 881, 1012, 1042, 1402
PluTI	GGCGCC	1 cut(s)	153
PpsI	GAGTC	6 cut(s)	127, 467, 881, 1012, 1042, 1402
PscI	ACATGT	1 cut(s)	1334
PsiI	TTATAA	1 cut(s)	1589
Psp124BI	GAGCTC	1 cut(s)	1698
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	4 cut(s)	95, 151, 268, 1329
PspPI	GGNCC	1 cut(s)	1189
PstI	CTGCAG	1 cut(s)	1266
PsuI	RGATCY	2 cut(s)	813, 1327
PvuII	CAGCTG	1 cut(s)	1159
RsaI	GTAC	5 cut(s)	59, 434, 768, 1097, 1553
RsaNI	GTAC	5 cut(s)	58, 433, 767, 1096, 1552
RseI	CAYNNNNRTG	3 cut(s)	1374, 1425, 1731
SacI	GAGCTC	1 cut(s)	1698
SalI	GTCGAC	2 cut(s)	130, 227
SapI	GCTCTTC	1 cut(s)	1116
SaqAI	TTAA	8 cut(s)	372, 693, 1068, 1182, 1247, 1319, 1700, 1799
Sau3AI	GATC	5 cut(s)	813, 925, 1327, 1736, 1803
Sau96I	GGNCC	1 cut(s)	1189
ScaI	AGTACT	1 cut(s)	1097
SchI	GAGTC	6 cut(s)	127, 468, 881, 1013, 1043, 1403
ScrFI	CCNGG	2 cut(s)	345, 1127
SduI	GDGCHC	3 cut(s)	96, 174, 1698
SexAI	ACCWGGT	1 cut(s)	343
SfcI	CTRYAG	2 cut(s)	1262, 1624
SfoI	GGCGCC	1 cut(s)	151
SfuI	TTCGAA	2 cut(s)	538, 553
SgrAI	CRCCGGYG	1 cut(s)	283
SmiMI	CAYNNNNRTG	3 cut(s)	1374, 1425, 1731
SmlI	CTYRAG	2 cut(s)	452, 1318
SmoI	CTYRAG	2 cut(s)	452, 1318
SpeI	ACTAGT	1 cut(s)	661
SsiI	CCGC	9 cut(s)	72, 175, 237, 261, 264, 295, 884, 1088, 1642
SspDI	GGCGCC	1 cut(s)	149
SspI	AATATT	3 cut(s)	1063, 1208, 1584
SspMI	CTAG	5 cut(s)	162, 645, 662, 1193, 1254
SstI	GAGCTC	1 cut(s)	1698
StyD4I	CCNGG	2 cut(s)	343, 1125
StyI	CCWWGG	2 cut(s)	161, 357
TaaI	ACNGT	5 cut(s)	87, 698, 797, 1011, 1551
TaiI	ACGT	1 cut(s)	1755
TaqI	TCGA	7 cut(s)	131, 186, 228, 538, 553, 1041, 1243
TaqII	GACCGA	1 cut(s)	503
TatI	WGTACW	3 cut(s)	57, 432, 1095
TauI	GCSGC	4 cut(s)	75, 240, 264, 1645
TfiI	GAWTC	8 cut(s)	8, 211, 386, 484, 650, 728, 1274, 1343
Tru1I	TTAA	8 cut(s)	372, 693, 1068, 1182, 1247, 1319, 1700, 1799
Tru9I	TTAA	8 cut(s)	372, 693, 1068, 1182, 1247, 1319, 1700, 1799
TscAI	CASTG	5 cut(s)	90, 623, 802, 1014, 1728
TseFI	GTSAC	1 cut(s)	1005
TseI	GCWGC	8 cut(s)	80, 668, 914, 1234, 1264, 1679, 1712, 1770
Tsp45I	GTSAC	1 cut(s)	1005
TspRI	CASTG	5 cut(s)	90, 623, 802, 1014, 1728
Vha464I	CTTAAG	1 cut(s)	1318
VneI	GTGCAC	1 cut(s)	170
XapI	RAATTY	7 cut(s)	24, 846, 860, 874, 898, 1785, 1821
XceI	RCATGY	3 cut(s)	443, 1109, 1338
XmaJI	CCTAGG	1 cut(s)	161
XmiI	GTMKAC	3 cut(s)	131, 228, 1637
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	5 cut(s)	162, 645, 662, 1193, 1254
ZrmI	AGTACT	1 cut(s)	1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.