Rorug05G0128100

TAF RNA Polymerase I subunit A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002593
Physical Location & Seq
Forward (+)
11403554 .. 11403997
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0128100.1

Sequence Viewer

Length: 444 bp
ATGCTTGAGGATTTTCAAAAGTACCACCCGAAGGCAGTTAGGAAGCAGCGAAGGCCTCTAACTAAGTGGCAAAATCCTCCAAGTGGTCGTCTGAAAATCAATGTTGATGGGGCCTTTAGAGCTGAGGAAGGGAGTGGAGGTATTGGGGTAGTTGTCAGGAATGATGCTGGTATGGGTATTGCTGCTTTGGCCAGGACTTTTCTACATGCACACTCGGTTCTTAATATGGAAGCGGAGGCGTGTAGGGCTGGCTTACTTCTTGGTATTCACCAAGGTTGGACTGACATAGATGTTGAAAGCGACTCTGCCATCCTGATTTCTGCTCTCAATAGTAGAGAGAAGAATTTCTCTGAGGTAGGGGTCATCATTACGGGCCGAAGGGCTCGACCCGGCCCTTGCATTAGGGCGGGCCGGCCCGACCCTTTCTCAATTAGGGTAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAF1_subA

Protein Analysis

147

Amino Acids

16.01

Weight (kDa)

9.9

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 34 - 119 2.6e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 233, 407
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 1 cut(s) 343
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 31, 83
AgsI TTSAA 2 cut(s) 17, 296
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AoxI GGCC 7 cut(s) 53, 111, 189, 373, 391, 409, 413
ApeKI GCWGC 2 cut(s) 46, 182
ApoI RAATTY 1 cut(s) 343
Asp700I GAANNNNTTC 1 cut(s) 344
AspS9I GGNCC 5 cut(s) 111, 373, 392, 409, 414
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 1 cut(s) 260
BalI TGGCCA 1 cut(s) 191
BanII GRGCYC 1 cut(s) 385
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 58, 169
BccI CCATC 2 cut(s) 101, 317
BciT130I CCWGG 1 cut(s) 193
BcnI CCSGG 1 cut(s) 390
BisI GCNGC 2 cut(s) 47, 183
BlsI GCNGC 2 cut(s) 48, 184
Bme1390I CCNGG 2 cut(s) 193, 390
BmgT120I GGNCC 5 cut(s) 111, 373, 392, 409, 414
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 2 cut(s) 193, 390
BmsI GCATC 1 cut(s) 154
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 83
Bse118I RCCGGY 1 cut(s) 411
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 2 cut(s) 31, 83
BseMII CTCAG 2 cut(s) 114, 342
BseXI GCAGC 2 cut(s) 58, 169
BshFI GGCC 7 cut(s) 55, 113, 191, 375, 393, 411, 415
BsiSI CCGG 2 cut(s) 390, 412
BslI CCNNNNNNNGG 2 cut(s) 31, 83
BsnI GGCC 7 cut(s) 55, 113, 191, 375, 393, 411, 415
Bsp1286I GDGCHC 1 cut(s) 385
BspACI CCGC 2 cut(s) 233, 407
BspANI GGCC 7 cut(s) 55, 113, 191, 375, 393, 411, 415
BspCNI CTCAG 2 cut(s) 115, 343
BspLI GGNNCC 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 411
BssAI RCCGGY 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 271
BssT1I CCWWGG 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 193
BstC8I GCNNGC 3 cut(s) 250, 409, 413
BstDEI CTNAG 3 cut(s) 63, 123, 351
BstF5I GGATG 1 cut(s) 309
BstMWI GCNNNNNNNGC 4 cut(s) 52, 119, 188, 245
BstNI CCWGG 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 191, 388
BstV1I GCAGC 2 cut(s) 58, 169
BsuRI GGCC 7 cut(s) 55, 113, 191, 375, 393, 411, 415
BtsCI GGATG 1 cut(s) 309
Cac8I GCNNGC 3 cut(s) 250, 409, 413
Cfr10I RCCGGY 1 cut(s) 411
Cfr13I GGNCC 5 cut(s) 111, 373, 392, 409, 414
Csp6I GTAC 1 cut(s) 22
CviAII CATG 1 cut(s) 206
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 3 cut(s) 63, 123, 351
EaeI YGGCCR 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 271
Eco147I AGGCCT 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 385
EcoO109I RGGNCCY 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 1 cut(s) 209
FaiI YATR 4 cut(s) 173, 207, 227, 287
FatI CATG 1 cut(s) 205
FauI CCCGC 1 cut(s) 400
Fnu4HI GCNGC 2 cut(s) 47, 183
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 385
FseI GGCCGGCC 1 cut(s) 415
Fsp4HI GCNGC 2 cut(s) 47, 183
GluI GCNGC 2 cut(s) 47, 183
HaeIII GGCC 7 cut(s) 55, 113, 191, 375, 393, 411, 415
HapII CCGG 2 cut(s) 390, 412
Hin1II CATG 1 cut(s) 209
HinfI GANTC 1 cut(s) 302
HpaII CCGG 2 cut(s) 390, 412
HphI GGTGA 1 cut(s) 260
Hpy188I TCNGA 2 cut(s) 93, 352
Hpy188III TCNNGA 2 cut(s) 157, 313
HpyAV CCTTC 4 cut(s) 25, 45, 122, 372
HpyCH4V TGCA 2 cut(s) 209, 399
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 119, 188, 245
HpyF3I CTNAG 3 cut(s) 63, 123, 351
Hsp92II CATG 1 cut(s) 209
KroI GCCGGC 1 cut(s) 411
KroNI GCCGGC 1 cut(s) 413
LpnPI CCDG 8 cut(s) 142, 153, 178, 205, 234, 326, 403, 425
Lsp1109I GCAGC 2 cut(s) 58, 169
LweI GCATC 1 cut(s) 154
MboII GAAGA 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 385
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 2 cut(s) 343, 429
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 257
MnlI CCTC 6 cut(s) 66, 87, 118, 131, 229, 346
Mox20I TGGCCA 1 cut(s) 191
MroNI GCCGGC 1 cut(s) 411
MroXI GAANNNNTTC 1 cut(s) 344
MscI TGGCCA 1 cut(s) 191
MseI TTAA 1 cut(s) 222
Msp20I TGGCCA 1 cut(s) 191
MspI CCGG 2 cut(s) 390, 412
MspR9I CCNGG 2 cut(s) 193, 390
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 4 cut(s) 52, 119, 188, 245
NaeI GCCGGC 1 cut(s) 413
NciI CCSGG 1 cut(s) 390
NgoMIV GCCGGC 1 cut(s) 411
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 112
NspI RCATGY 1 cut(s) 209
PceI AGGCCT 1 cut(s) 55
PdiI GCCGGC 1 cut(s) 413
PdmI GAANNNNTTC 1 cut(s) 344
PkrI GCNGC 2 cut(s) 48, 184
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 5 cut(s) 111, 373, 392, 409, 414
RigI GGCCGGCC 1 cut(s) 415
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 2 cut(s) 47, 183
Sau96I GGNCC 5 cut(s) 111, 373, 392, 409, 414
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 2 cut(s) 193, 390
SduI GDGCHC 1 cut(s) 385
SetI ASST 4 cut(s) 124, 142, 277, 357
SfaNI GCATC 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 2 cut(s) 343, 429
SseBI AGGCCT 1 cut(s) 55
SsiI CCGC 2 cut(s) 233, 407
StuI AGGCCT 1 cut(s) 55
StyD4I CCNGG 2 cut(s) 191, 388
StyI CCWWGG 1 cut(s) 271
TaqI TCGA 1 cut(s) 385
TasI AATT 2 cut(s) 343, 429
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TseI GCWGC 2 cut(s) 46, 182
XapI RAATTY 1 cut(s) 343
XceI RCATGY 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.