RchiOBHm_Chr5g0031851

TAF RNA Polymerase I subunit A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002593
Physical Location & Seq
Forward (+)
25591042 .. 25597234
6193 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31106

Sequence Viewer

Length: 1947 bp
ATGGCTGAATCTCCTATACCAGAAATTCCGATTATTCCCGAACGCCGGAAAAGAAAGTACACCGACGACGGCGACGAGGCAGTACTGTCGGGGCACCTAAAACGCATCGTTTTATCACTAAGCAAGCCGTCGACTCTGCTCGGCATCGGCGCCACAAAACCTAGGTCGGTGCACCGCGCCAAGCTCGAAAAGCTTCTCCGGAAGCTCGTGATTCACCACAACTGGGTCGACGCCAGCGGCGTCCTCAGCGTGTTGCTCGGCGGCGGAGCCAGCGACAGGTCGCCGGCGAACAACCGCTTCATGTATTGGGTTTTGCTGGAAATGGTGGAGCGGTTGTCTGAGATGGAAAAGGAGGAGCGTTTGCCTGGTAATTACTCCAAGGAGGTGTGGATTAAGAAAGTGTTTGAAGCTTGGGAGAAGAAGAATGGTAAGATGAAGGCAGAGTTAGAAGAGTACAGACATGCTGTTGAACTTGAGCGCATCTCGCTCTCTCTTGCAAAAGGAAATCTTATGGAGGCTGAAGCCGGTGCTTTCGGTCTCATGCAACCAAATGGTTTTCGAAATGACCCTCTTCGAAATATGATTGTCGGATTGACATTCCAGAAATTGTGGTATTCCAAGCTCCCAAAAGAGATGCAGTGGAGGGAGGCTGACCAGTTTTACACTAGGGAATCAAATGAACTAGTTGCAGGCTCAGAGGGGCATGGTTCTATTAACAGTAACGAGGCTGGTAGCGCCATTCATTGTGATTCAGACACCTCTGTCATGAATGATAAAGTAGAGAATGTACCACCTATTGTTGCTGTTGATGCTGACAGTGGCTTACATAGAGAGATCTCTGTGGAGGTTGATGACATGGAAGTAGAAATTTCTCCACCGAAATTTGAGACCCAAAATTTCTATGCGGACTCTGCTGAAAATTCGGAAGATGAAGCTGCTTTATCTGATCATGGTGGTCAAATGCAGTATGCTCCCATTTTCTCTGAACTTGAGGGGTTGGAGTCACTGTTACTGCCCATACGATTGCCAGAGTCTCTCGATAATCATGAAGATAAGAATATTTTTAATGACTATTACAAGGATGCAGTGAAGTACTTACGACATGCTCTTCACTCTTCACCCCCGGTATTGGTAGCCTTACATCCTTTGATACAGCTGTTGCTGATTGGAGGTCAAGTTAAAGAGGCCCTAGATGAGATTGAATATTGTTGTAATTTTTCAAACACAGCGCTGCCTACTCGGGTGGTCTGGGAGTTCATGCTCATGTTGCTTATGATTTATGAATTGTACTTATGCTCTAATGTCTACATGTTGGACAGATTAAGGTCTAGTCTTCTGCAGCAATTTGATTCTAATAACAAACCTGTGCTTTCCACTTGTCTGGAGGAAAACTTAAGGAAGGATCCTACATGTTGCGATTCATTGGAAAAGCTTGTTCTGTTGCATCAAAATGATAATTATAGTCCTGAGTCCCTGCTTGAAATGATAGCTTTGCATTTAGATGCCACCAATGCTGAATACAACATATGGAGAGAGTATGCTATGTGTTTCCTGAAGCTTTCTCAGTATGAAGAGGACAGGATGTCAGTGTGTCTGAATGGAAATGAAGGTGGACATAAACCACGGTACTCTGTTTCTTTCAATAAGACCCCGAAAATATTTATAAAGGGACAATCTGGAAAGAATTGGAAATTGCGCTGTAGATGGTGGTCTACGCGGCATTTCAGCCATGATATTCTTGCATCAGAGATTGCAGCAGGTGATTTGGAGCTCTTAACTTACAAAGCAGCGAGTGCAGTGCATATGTATGGATCAGAGTTCTATTACGTTGTGGATGCTCTTTGCTGCTTAGAGAAAGAAAGTGAGAGGGACTTGCTCTGTTTTTTGCAAATGCACATTCGAAATTCTGTTCGAATTTATTCAAATTCTCGACAGAGAACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAF1_subA

Protein Analysis

648

Amino Acids

74.05

Weight (kDa)

5.46

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF1_subA PF14929 69 - 612 5.2e-64 TAF RNA Polymerase I subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1664
AarI CACCTGC 1 cut(s) 1748
AasI GACNNNNNNGTC 1 cut(s) 761
Acc36I ACCTGC 1 cut(s) 1748
AccB1I GGYRCC 2 cut(s) 93, 149
AccBSI CCGCTC 1 cut(s) 331
AccI GTMKAC 4 cut(s) 131, 228, 1305, 1712
AccII CGCG 2 cut(s) 177, 1717
AccIII TCCGGA 1 cut(s) 198
AciI CCGC 8 cut(s) 175, 237, 261, 264, 295, 331, 905, 1717
AclWI GGATC 3 cut(s) 1397, 1410, 1819
AcsI RAATTY 8 cut(s) 24, 867, 881, 895, 919, 1903, 1914, 1924
AcuI CTGAAG 2 cut(s) 540, 1574
AcyI GRCGYC 3 cut(s) 150, 231, 240
AfaI GTAC 7 cut(s) 59, 84, 455, 789, 1094, 1289, 1628
AfeI AGCGCT 1 cut(s) 1230
AfiI CCNNNNNNNGG 4 cut(s) 45, 223, 276, 1129
AflII CTTAAG 1 cut(s) 1393
AflIII ACRYGT 2 cut(s) 1308, 1409
AgsI TTSAA 7 cut(s) 407, 470, 1202, 1221, 1481, 1642, 1923
AhdI GACNNNNNGTC 1 cut(s) 1582
AhlI ACTAGT 1 cut(s) 682
AjnI CCWGG 1 cut(s) 364
Alw21I GWGCWC 2 cut(s) 174, 1773
Alw26I GTCTC 3 cut(s) 542, 881, 1038
Alw44I GTGCAC 1 cut(s) 170
AlwI GGATC 3 cut(s) 1397, 1410, 1819
Ama87I CYCGRG 1 cut(s) 1239
Aor13HI TCCGGA 1 cut(s) 198
Aor51HI AGCGCT 1 cut(s) 1230
AoxI GGCC 1 cut(s) 1185
ApaLI GTGCAC 1 cut(s) 170
ApeKI GCWGC 6 cut(s) 935, 1231, 1339, 1754, 1787, 1845
ApoI RAATTY 8 cut(s) 24, 867, 881, 895, 919, 1903, 1914, 1924
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
Asp700I GAANNNNTTC 2 cut(s) 192, 1918
AspA2I CCTAGG 1 cut(s) 161
AspLEI GCGC 6 cut(s) 152, 179, 480, 737, 1231, 1698
AspS9I GGNCC 1 cut(s) 1186
AsuC2I CCSGG 1 cut(s) 1124
AsuHPI GGTGA 3 cut(s) 206, 1110, 1772
AsuII TTCGAA 4 cut(s) 559, 574, 1900, 1912
AvaI CYCGRG 1 cut(s) 1239
AvrII CCTAGG 1 cut(s) 161
BaeGI GKGCMC 2 cut(s) 96, 174
BaeI ACNNNNGTAYC 2 cut(s) 1142, 1175
BamHI GGATCC 1 cut(s) 1402
BanI GGYRCC 2 cut(s) 93, 149
BanII GRGCYC 1 cut(s) 1773
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 1325
Bbv12I GWGCWC 2 cut(s) 174, 1773
BbvCI CCTCAGC 1 cut(s) 245
BbvI GCAGC 6 cut(s) 922, 1218, 1351, 1766, 1799, 1832
BccI CCATC 2 cut(s) 337, 1698
BceAI ACGGC 2 cut(s) 85, 112
BcgI CGANNNNNNTGC 4 cut(s) 69, 103, 1780, 1814
BciT130I CCWGG 1 cut(s) 366
BclI TGATCA 1 cut(s) 946
BcnI CCSGG 1 cut(s) 1124
BcoDI GTCTC 3 cut(s) 542, 881, 1038
BcuI ACTAGT 1 cut(s) 682
BfaI CTAG 5 cut(s) 162, 666, 683, 1190, 1329
BfmI CTRYAG 2 cut(s) 1337, 1699
BfoI RGCGCY 3 cut(s) 153, 738, 1232
BfrI CTTAAG 1 cut(s) 1393
BfuAI ACCTGC 1 cut(s) 1748
BglII AGATCT 1 cut(s) 834
BisI GCNGC 9 cut(s) 238, 262, 936, 1232, 1340, 1718, 1755, 1788, 1846
BlnI CCTAGG 1 cut(s) 161
BlsI GCNGC 9 cut(s) 239, 263, 937, 1233, 1341, 1719, 1756, 1789, 1847
BmcAI AGTACT 2 cut(s) 84, 1094
Bme1390I CCNGG 2 cut(s) 366, 1124
BmeRI GACNNNNNGTC 1 cut(s) 1582
BmeT110I CYCGRG 1 cut(s) 1239
BmgT120I GGNCC 1 cut(s) 1186
BmiI GGNNCC 4 cut(s) 95, 151, 268, 1404
BmrFI CCNGG 2 cut(s) 366, 1124
BmrI ACTGGG 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 1325
BplI GAGNNNNNCTC 2 cut(s) 467, 499
BpmI CTGGAG 1 cut(s) 1403
Bpu10I CCTNAGC 1 cut(s) 245
Bpu14I TTCGAA 4 cut(s) 559, 574, 1900, 1912
BpuEI CTTGAG 2 cut(s) 494, 1010
BpuMI CCSGG 1 cut(s) 1124
BsaHI GRCGYC 3 cut(s) 150, 231, 240
BsaI GGTCTC 2 cut(s) 542, 881
BsaJI CCNNGG 4 cut(s) 161, 378, 1122, 1622
BsaWI WCCGGW 1 cut(s) 198
BsaXI ACNNNNNCTCC 6 cut(s) 320, 350, 992, 1022, 1161, 1191
Bsc4I CCNNNNNNNGG 4 cut(s) 45, 223, 276, 1129
Bse118I RCCGGY 2 cut(s) 283, 524
Bse1I ACTGG 2 cut(s) 227, 655
BseAI TCCGGA 1 cut(s) 198
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 4 cut(s) 161, 378, 1122, 1622
BseGI GGATG 4 cut(s) 1087, 1141, 1587, 1840
BseLI CCNNNNNNNGG 4 cut(s) 45, 223, 276, 1129
BseMII CTCAG 5 cut(s) 259, 330, 708, 1458, 1577
BseNI ACTGG 2 cut(s) 227, 655
BseRI GAGGAG 1 cut(s) 368
BseSI GKGCMC 2 cut(s) 96, 174
BseXI GCAGC 6 cut(s) 922, 1218, 1351, 1766, 1799, 1832
BsgI GTGCAG 1 cut(s) 1815
Bsh1236I CGCG 2 cut(s) 177, 1717
BshFI GGCC 1 cut(s) 1187
BshNI GGYRCC 2 cut(s) 93, 149
BsiHKAI GWGCWC 2 cut(s) 174, 1773
BsiHKCI CYCGRG 1 cut(s) 1239
BsiSI CCGG 5 cut(s) 46, 199, 284, 525, 1124
BslFI GGGAC 3 cut(s) 1456, 1683, 1883
BslI CCNNNNNNNGG 4 cut(s) 45, 223, 276, 1129
BsmAI GTCTC 3 cut(s) 542, 881, 1038
BsmFI GGGAC 3 cut(s) 1456, 1683, 1883
BsnI GGCC 1 cut(s) 1187
Bso31I GGTCTC 2 cut(s) 542, 881
BsoBI CYCGRG 1 cut(s) 1239
Bsp119I TTCGAA 4 cut(s) 559, 574, 1900, 1912
Bsp1286I GDGCHC 3 cut(s) 96, 174, 1773
Bsp13I TCCGGA 1 cut(s) 198
Bsp143I GATC 4 cut(s) 834, 946, 1402, 1811
BspACI CCGC 8 cut(s) 175, 237, 261, 264, 295, 331, 905, 1717
BspANI GGCC 1 cut(s) 1187
BspCNI CTCAG 5 cut(s) 258, 331, 707, 1459, 1576
BspEI TCCGGA 1 cut(s) 198
BspFNI CGCG 2 cut(s) 177, 1717
BspHI TCATGA 2 cut(s) 765, 1045
BspLI GGNNCC 4 cut(s) 95, 151, 268, 1404
BspMAI CTGCAG 1 cut(s) 1341
BspMI ACCTGC 1 cut(s) 1748
BspPI GGATC 3 cut(s) 1397, 1410, 1819
BspQI GCTCTTC 1 cut(s) 1113
BspT104I TTCGAA 4 cut(s) 559, 574, 1900, 1912
BspT107I GGYRCC 2 cut(s) 93, 149
BspTI CTTAAG 1 cut(s) 1393
BspTNI GGTCTC 2 cut(s) 542, 881
BsrBI CCGCTC 1 cut(s) 331
BsrFI RCCGGY 2 cut(s) 283, 524
BsrI ACTGG 2 cut(s) 227, 655
BssAI RCCGGY 2 cut(s) 283, 524
BssECI CCNNGG 4 cut(s) 161, 378, 1122, 1622
BssMI GATC 4 cut(s) 834, 946, 1402, 1811
BssNI GRCGYC 3 cut(s) 150, 231, 240
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 2 cut(s) 161, 378
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 5 cut(s) 87, 719, 818, 1008, 1626
Bst6I CTCTTC 5 cut(s) 444, 576, 1113, 1120, 1566
BstACI GRCGYC 3 cut(s) 150, 231, 240
BstAFI CTTAAG 1 cut(s) 1393
BstAPI GCANNNNNTGC 1 cut(s) 1793
BstBI TTCGAA 4 cut(s) 559, 574, 1900, 1912
BstC8I GCNNGC 5 cut(s) 125, 235, 271, 285, 691
BstDEI CTNAG 7 cut(s) 119, 245, 339, 694, 1467, 1563, 1849
BstDSI CCRYGG 1 cut(s) 1622
BstF5I GGATG 4 cut(s) 1087, 1141, 1587, 1840
BstFNI CGCG 2 cut(s) 177, 1717
BstH2I RGCGCY 3 cut(s) 153, 738, 1232
BstHHI GCGC 6 cut(s) 152, 179, 480, 737, 1231, 1698
BstKTI GATC 4 cut(s) 837, 949, 1405, 1814
BstMAI GTCTC 3 cut(s) 542, 881, 1038
BstMBI GATC 4 cut(s) 834, 946, 1402, 1811
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 4 cut(s) 464, 1106, 1312, 1413
BstSCI CCNGG 2 cut(s) 364, 1122
BstSFI CTRYAG 2 cut(s) 1337, 1699
BstSLI GKGCMC 2 cut(s) 96, 174
BstUI CGCG 2 cut(s) 177, 1717
BstV1I GCAGC 6 cut(s) 922, 1218, 1351, 1766, 1799, 1832
BstV2I GAAGAC 1 cut(s) 1325
BstX2I RGATCY 2 cut(s) 834, 1402
BstXI CCANNNNNNTGG 1 cut(s) 1381
BstYI RGATCY 2 cut(s) 834, 1402
BsuRI GGCC 1 cut(s) 1187
BtgI CCRYGG 1 cut(s) 1622
BtsCI GGATG 4 cut(s) 1087, 1141, 1587, 1840
BtsI GCAGTG 3 cut(s) 644, 1092, 1803
BtsIMutI CAGTG 6 cut(s) 644, 823, 1004, 1092, 1593, 1803
BveI ACCTGC 1 cut(s) 1748
Cac8I GCNNGC 5 cut(s) 125, 235, 271, 285, 691
CciI TCATGA 2 cut(s) 765, 1045
CfoI GCGC 6 cut(s) 152, 179, 480, 737, 1231, 1698
Cfr10I RCCGGY 2 cut(s) 283, 524
Cfr13I GGNCC 1 cut(s) 1186
CseI GACGC 2 cut(s) 229, 239
Csp6I GTAC 7 cut(s) 58, 83, 454, 788, 1093, 1288, 1627
CviQI GTAC 7 cut(s) 58, 83, 454, 788, 1093, 1288, 1627
DdeI CTNAG 7 cut(s) 119, 245, 339, 694, 1467, 1563, 1849
DinI GGCGCC 1 cut(s) 151
DpnI GATC 4 cut(s) 836, 948, 1404, 1813
DpnII GATC 4 cut(s) 834, 946, 1402, 1811
DrdI GACNNNNNNGTC 1 cut(s) 761
DriI GACNNNNNGTC 1 cut(s) 1582
DseDI GACNNNNNNGTC 1 cut(s) 761
Eam1104I CTCTTC 5 cut(s) 444, 576, 1113, 1120, 1566
Eam1105I GACNNNNNGTC 1 cut(s) 1582
EarI CTCTTC 5 cut(s) 444, 576, 1113, 1120, 1566
EciI GGCGGA 1 cut(s) 279
Ecl136II GAGCTC 1 cut(s) 1771
Eco130I CCWWGG 2 cut(s) 161, 378
Eco24I GRGCYC 1 cut(s) 1773
Eco31I GGTCTC 2 cut(s) 542, 881
Eco47III AGCGCT 1 cut(s) 1230
Eco53kI GAGCTC 1 cut(s) 1771
Eco57I CTGAAG 2 cut(s) 540, 1574
Eco88I CYCGRG 1 cut(s) 1239
EcoICRI GAGCTC 1 cut(s) 1771
EcoO109I RGGNCCY 1 cut(s) 1186
EcoRII CCWGG 1 cut(s) 364
EcoT14I CCWWGG 2 cut(s) 161, 378
EcoT38I GRGCYC 1 cut(s) 1773
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
ErhI CCWWGG 2 cut(s) 161, 378
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FaqI GGGAC 3 cut(s) 1456, 1683, 1883
FauNDI CATATG 2 cut(s) 1526, 1803
FbaI TGATCA 1 cut(s) 946
FblI GTMKAC 4 cut(s) 131, 228, 1305, 1712
Fnu4HI GCNGC 9 cut(s) 238, 262, 936, 1232, 1340, 1718, 1755, 1788, 1846
FokI GGATG 4 cut(s) 1094, 1128, 1594, 1847
FriOI GRGCYC 1 cut(s) 1773
Fsp4HI GCNGC 9 cut(s) 238, 262, 936, 1232, 1340, 1718, 1755, 1788, 1846
FspBI CTAG 5 cut(s) 162, 666, 683, 1190, 1329
GlaI GCGC 6 cut(s) 151, 178, 479, 736, 1230, 1697
GluI GCNGC 9 cut(s) 238, 262, 936, 1232, 1340, 1718, 1755, 1788, 1846
GsuI CTGGAG 1 cut(s) 1403
HaeII RGCGCY 3 cut(s) 153, 738, 1232
HaeIII GGCC 1 cut(s) 1187
HapII CCGG 5 cut(s) 46, 199, 284, 525, 1124
HgaI GACGC 2 cut(s) 229, 239
HhaI GCGC 6 cut(s) 152, 179, 480, 737, 1231, 1698
Hin1I GRCGYC 3 cut(s) 150, 231, 240
Hin6I GCGC 6 cut(s) 150, 177, 478, 735, 1229, 1696
HinP1I GCGC 6 cut(s) 150, 177, 478, 735, 1229, 1696
HincII GTYRAC 2 cut(s) 132, 229
HindII GTYRAC 2 cut(s) 132, 229
HindIII AAGCTT 4 cut(s) 191, 408, 1430, 1556
HpaII CCGG 5 cut(s) 46, 199, 284, 525, 1124
HphI GGTGA 3 cut(s) 206, 1110, 1772
Hpy166II GTNNAC 7 cut(s) 60, 132, 172, 229, 1306, 1613, 1713
Hpy8I GTNNAC 7 cut(s) 60, 132, 172, 229, 1306, 1613, 1713
Hpy99I CGWCG 5 cut(s) 68, 71, 77, 133, 233
HpyAV CCTTC 3 cut(s) 430, 1393, 1601
HpyCH4III ACNGT 5 cut(s) 87, 719, 818, 1008, 1626
HpyCH4IV ACGT 1 cut(s) 1827
HpyF3I CTNAG 7 cut(s) 119, 245, 339, 694, 1467, 1563, 1849
HpySE526I ACGT 1 cut(s) 1827
Hsp92I GRCGYC 3 cut(s) 150, 231, 240
HspAI GCGC 6 cut(s) 150, 177, 478, 735, 1229, 1696
KasI GGCGCC 1 cut(s) 149
Kpn2I TCCGGA 1 cut(s) 198
KroI GCCGGC 1 cut(s) 283
KroNI GCCGGC 1 cut(s) 285
Ksp22I TGATCA 1 cut(s) 946
Kzo9I GATC 4 cut(s) 834, 946, 1402, 1811
LguI GCTCTTC 1 cut(s) 1113
LmnI GCTCC 6 cut(s) 266, 328, 355, 627, 976, 1768
Lsp1109I GCAGC 6 cut(s) 922, 1218, 1351, 1766, 1799, 1832
MaeI CTAG 5 cut(s) 162, 666, 683, 1190, 1329
MaeII ACGT 1 cut(s) 1827
MaeIII GTNAC 3 cut(s) 719, 1002, 1008
MalI GATC 4 cut(s) 836, 948, 1404, 1813
MbiI CCGCTC 1 cut(s) 331
MboI GATC 4 cut(s) 834, 946, 1402, 1811
MflI RGATCY 2 cut(s) 834, 1402
MhlI GDGCHC 3 cut(s) 96, 174, 1773
Mly113I GGCGCC 1 cut(s) 150
MlyI GAGTC 5 cut(s) 127, 902, 1010, 1040, 1478
MmeI TCCRAC 3 cut(s) 568, 978, 1293
MreI CGCCGGCG 1 cut(s) 283
MroI TCCGGA 1 cut(s) 198
MroNI GCCGGC 1 cut(s) 283
MroXI GAANNNNTTC 2 cut(s) 192, 1918
MseI TTAA 7 cut(s) 393, 714, 1065, 1179, 1322, 1394, 1775
MslI CAYNNNNRTG 4 cut(s) 1262, 1449, 1500, 1806
MspA1I CMGCKG 2 cut(s) 237, 1156
MspCI CTTAAG 1 cut(s) 1393
MspI CCGG 5 cut(s) 46, 199, 284, 525, 1124
MspR9I CCNGG 2 cut(s) 366, 1124
MvaI CCWGG 1 cut(s) 366
MvnI CGCG 2 cut(s) 177, 1717
NaeI GCCGGC 1 cut(s) 285
NarI GGCGCC 1 cut(s) 150
NciI CCSGG 1 cut(s) 1124
NdeI CATATG 2 cut(s) 1526, 1803
NdeII GATC 4 cut(s) 834, 946, 1402, 1811
NgoMIV GCCGGC 1 cut(s) 283
NlaIV GGNNCC 4 cut(s) 95, 151, 268, 1404
NmeAIII GCCGAG 2 cut(s) 120, 237
NmuCI GTSAC 1 cut(s) 1002
NspI RCATGY 4 cut(s) 464, 1106, 1312, 1413
NspV TTCGAA 4 cut(s) 559, 574, 1900, 1912
PagI TCATGA 2 cut(s) 765, 1045
PaqCI CACCTGC 1 cut(s) 1748
PciI ACATGT 2 cut(s) 1308, 1409
PciSI GCTCTTC 1 cut(s) 1113
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 237
PdiI GCCGGC 1 cut(s) 285
PdmI GAANNNNTTC 2 cut(s) 192, 1918
PfeI GAWTC 6 cut(s) 8, 211, 671, 749, 1349, 1418
PkrI GCNGC 9 cut(s) 239, 263, 937, 1233, 1341, 1719, 1756, 1789, 1847
PleI GAGTC 5 cut(s) 127, 902, 1009, 1039, 1477
PluTI GGCGCC 1 cut(s) 153
PpsI GAGTC 5 cut(s) 127, 902, 1009, 1039, 1477
PscI ACATGT 2 cut(s) 1308, 1409
PsiI TTATAA 1 cut(s) 1664
Psp124BI GAGCTC 1 cut(s) 1773
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 4 cut(s) 95, 151, 268, 1404
PspPI GGNCC 1 cut(s) 1186
PstI CTGCAG 1 cut(s) 1341
PsuI RGATCY 2 cut(s) 834, 1402
PvuII CAGCTG 1 cut(s) 1156
RsaI GTAC 7 cut(s) 59, 84, 455, 789, 1094, 1289, 1628
RsaNI GTAC 7 cut(s) 58, 83, 454, 788, 1093, 1288, 1627
RseI CAYNNNNRTG 4 cut(s) 1262, 1449, 1500, 1806
SacI GAGCTC 1 cut(s) 1773
SalI GTCGAC 2 cut(s) 130, 227
SapI GCTCTTC 1 cut(s) 1113
SaqAI TTAA 7 cut(s) 393, 714, 1065, 1179, 1322, 1394, 1775
SatI GCNGC 9 cut(s) 238, 262, 936, 1232, 1340, 1718, 1755, 1788, 1846
Sau3AI GATC 4 cut(s) 834, 946, 1402, 1811
Sau96I GGNCC 1 cut(s) 1186
ScaI AGTACT 2 cut(s) 84, 1094
SchI GAGTC 5 cut(s) 127, 902, 1010, 1040, 1478
ScrFI CCNGG 2 cut(s) 366, 1124
SduI GDGCHC 3 cut(s) 96, 174, 1773
SfcI CTRYAG 2 cut(s) 1337, 1699
SfoI GGCGCC 1 cut(s) 151
SfuI TTCGAA 4 cut(s) 559, 574, 1900, 1912
SgrAI CRCCGGYG 1 cut(s) 283
SmiMI CAYNNNNRTG 4 cut(s) 1262, 1449, 1500, 1806
SmlI CTYRAG 3 cut(s) 473, 989, 1393
SmoI CTYRAG 3 cut(s) 473, 989, 1393
SpeI ACTAGT 1 cut(s) 682
SsiI CCGC 8 cut(s) 175, 237, 261, 264, 295, 331, 905, 1717
SspDI GGCGCC 1 cut(s) 149
SspI AATATT 3 cut(s) 1060, 1205, 1659
SspMI CTAG 5 cut(s) 162, 666, 683, 1190, 1329
SstI GAGCTC 1 cut(s) 1773
StyD4I CCNGG 2 cut(s) 364, 1122
StyI CCWWGG 2 cut(s) 161, 378
TaaI ACNGT 5 cut(s) 87, 719, 818, 1008, 1626
TaiI ACGT 1 cut(s) 1830
TaqI TCGA 9 cut(s) 131, 186, 228, 559, 574, 1038, 1900, 1912, 1930
TaqII GACCGA 1 cut(s) 524
TatI WGTACW 5 cut(s) 57, 82, 453, 1092, 1287
TauI GCSGC 3 cut(s) 240, 264, 1720
TfiI GAWTC 6 cut(s) 8, 211, 671, 749, 1349, 1418
Tru1I TTAA 7 cut(s) 393, 714, 1065, 1179, 1322, 1394, 1775
Tru9I TTAA 7 cut(s) 393, 714, 1065, 1179, 1322, 1394, 1775
TscAI CASTG 6 cut(s) 644, 823, 1011, 1092, 1593, 1803
TseFI GTSAC 1 cut(s) 1002
TseI GCWGC 6 cut(s) 935, 1231, 1339, 1754, 1787, 1845
Tsp45I GTSAC 1 cut(s) 1002
TspRI CASTG 6 cut(s) 644, 823, 1011, 1092, 1593, 1803
Vha464I CTTAAG 1 cut(s) 1393
VneI GTGCAC 1 cut(s) 170
XapI RAATTY 8 cut(s) 24, 867, 881, 895, 919, 1903, 1914, 1924
XceI RCATGY 4 cut(s) 464, 1106, 1312, 1413
XmaJI CCTAGG 1 cut(s) 161
XmiI GTMKAC 4 cut(s) 131, 228, 1305, 1712
XmnI GAANNNNTTC 2 cut(s) 192, 1918
XspI CTAG 5 cut(s) 162, 666, 683, 1190, 1329
ZrmI AGTACT 2 cut(s) 84, 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.