Rw5G020260

TAF RNA Polymerase I subunit A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002593
Physical Location & Seq
Forward (+)
26720857 .. 26723164
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G020260.1

Sequence Viewer

Length: 717 bp
ATGCTGTTGAACTTGAGCGAATCGCTCTCGCTTGCAAAAGGGAATCTTATGGAGGCTGAAGCTGGTGCTTTCGGTCTCATGCAACCAAATGGTTTTCGAAATGACCCTCTTCGAAATATGATTGTCGGATTGACATTCCAGAAATTGTGGTATTCCAAGCTCCCAAAAGAGATGCAGTGGAGGGAGGCTGACCAGTTTTACACTAGGGAATCAAATGAACTAGTTGCAGGCTCAGAGGGGCATGGCTCTATTAACAGTAATGAGGCTGGTAGCGCCATTCATTGTGATTCAGACACCTCTGTCATGAATGATAAAGTAGAGAATGTACCACCTATTGTTGCTGTTGATGCTGACAGTGGCTTACATAGAGAGATCTCTGTGGAGGTTGATGACATGGAAGTAGAAATTTCTCCACCGAAATTTGAGACCCAAAATTTCTATGCGGACTCTGCTGAAAATTCGGAAGATGAAGCTGCTTTATCTGATCATGGTGGTCAAATGCAGTATGCTCCCATTTTCTCTGAACTTGAGGGGTTGGAGTCACTGTTACTGCCCATACGATTGCCAGAGTCTCTCGATAATCATGAAGATAAGAATATTTTTAATGACTATTACAAGGATGCAGTGAAGTACTTACGACATGCTCTTCACTCTTCACCCCCGCTATTGGTAGCCTTACATCCTTTGATACAGCTGTTGCTGATTGGAGGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAF1_subA

Protein Analysis

238

Amino Acids

26.43

Weight (kDa)

4.49

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF1_subA PF14929 21 - 238 8.8e-13 TAF RNA Polymerase I subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
AciI CCGC 2 cut(s) 443, 662
AcsI RAATTY 4 cut(s) 405, 419, 433, 457
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 2 cut(s) 327, 632
AfiI CCNNNNNNNGG 1 cut(s) 667
AgsI TTSAA 1 cut(s) 10
AhlI ACTAGT 1 cut(s) 220
AluBI AGCT 4 cut(s) 62, 160, 473, 694
AluI AGCT 4 cut(s) 62, 160, 473, 694
Alw26I GTCTC 3 cut(s) 80, 419, 576
ApeKI GCWGC 1 cut(s) 473
ApoI RAATTY 4 cut(s) 405, 419, 433, 457
AspLEI GCGC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 648
AsuII TTCGAA 2 cut(s) 97, 112
BaeI ACNNNNGTAYC 2 cut(s) 680, 713
BbvI GCAGC 1 cut(s) 460
BclI TGATCA 1 cut(s) 484
BcoDI GTCTC 3 cut(s) 80, 419, 576
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 2 cut(s) 204, 221
BfoI RGCGCY 1 cut(s) 276
BglII AGATCT 1 cut(s) 372
BisI GCNGC 1 cut(s) 474
BlsI GCNGC 1 cut(s) 475
BmcAI AGTACT 1 cut(s) 632
BmsI GCATC 3 cut(s) 162, 337, 610
Bpu14I TTCGAA 2 cut(s) 97, 112
BpuEI CTTGAG 2 cut(s) 34, 548
BsaI GGTCTC 2 cut(s) 80, 419
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
Bsc4I CCNNNNNNNGG 1 cut(s) 667
Bse1I ACTGG 1 cut(s) 193
BseGI GGATG 2 cut(s) 625, 679
BseLI CCNNNNNNNGG 1 cut(s) 667
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 460
BslI CCNNNNNNNGG 1 cut(s) 667
BsmAI GTCTC 3 cut(s) 80, 419, 576
Bso31I GGTCTC 2 cut(s) 80, 419
Bsp119I TTCGAA 2 cut(s) 97, 112
Bsp143I GATC 2 cut(s) 372, 484
BspACI CCGC 2 cut(s) 443, 662
BspCNI CTCAG 1 cut(s) 245
BspHI TCATGA 2 cut(s) 303, 583
BspQI GCTCTTC 1 cut(s) 651
BspT104I TTCGAA 2 cut(s) 97, 112
BspTNI GGTCTC 2 cut(s) 80, 419
BsrI ACTGG 1 cut(s) 193
BssMI GATC 2 cut(s) 372, 484
Bst4CI ACNGT 3 cut(s) 257, 356, 546
Bst6I CTCTTC 3 cut(s) 114, 651, 658
BstBI TTCGAA 2 cut(s) 97, 112
BstC8I GCNNGC 2 cut(s) 33, 229
BstDEI CTNAG 1 cut(s) 232
BstF5I GGATG 2 cut(s) 625, 679
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 2 cut(s) 375, 487
BstMAI GTCTC 3 cut(s) 80, 419, 576
BstMBI GATC 2 cut(s) 372, 484
BstMWI GCNNNNNNNGC 3 cut(s) 272, 347, 449
BstNSI RCATGY 1 cut(s) 644
BstV1I GCAGC 1 cut(s) 460
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BtsCI GGATG 2 cut(s) 625, 679
BtsI GCAGTG 2 cut(s) 182, 630
BtsIMutI CAGTG 4 cut(s) 182, 361, 542, 630
Cac8I GCNNGC 2 cut(s) 33, 229
CciI TCATGA 2 cut(s) 303, 583
CfoI GCGC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 326, 631
CviAII CATG 7 cut(s) 79, 242, 304, 394, 488, 584, 641
CviQI GTAC 2 cut(s) 326, 631
DdeI CTNAG 1 cut(s) 232
DpnI GATC 2 cut(s) 374, 486
DpnII GATC 2 cut(s) 372, 484
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
Eam1104I CTCTTC 3 cut(s) 114, 651, 658
EarI CTCTTC 3 cut(s) 114, 651, 658
Eco31I GGTCTC 2 cut(s) 80, 419
Eco57I CTGAAG 1 cut(s) 78
FaeI CATG 7 cut(s) 82, 245, 307, 397, 491, 587, 644
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FatI CATG 7 cut(s) 78, 241, 303, 393, 487, 583, 640
FauI CCCGC 1 cut(s) 669
FbaI TGATCA 1 cut(s) 484
Fnu4HI GCNGC 1 cut(s) 474
FokI GGATG 2 cut(s) 632, 666
Fsp4HI GCNGC 1 cut(s) 474
FspBI CTAG 2 cut(s) 204, 221
GlaI GCGC 1 cut(s) 274
GluI GCNGC 1 cut(s) 474
HaeII RGCGCY 1 cut(s) 276
HhaI GCGC 1 cut(s) 275
Hin1II CATG 7 cut(s) 82, 245, 307, 397, 491, 587, 644
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HinfI GANTC 7 cut(s) 20, 43, 209, 287, 446, 539, 569
HphI GGTGA 1 cut(s) 648
Hpy188I TCNGA 6 cut(s) 128, 235, 292, 463, 484, 523
Hpy188III TCNNGA 4 cut(s) 139, 304, 575, 584
HpyCH4III ACNGT 3 cut(s) 257, 356, 546
HpyCH4V TGCA 6 cut(s) 35, 82, 175, 227, 502, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 347, 449
HpyF3I CTNAG 1 cut(s) 232
Hsp92II CATG 7 cut(s) 82, 245, 307, 397, 491, 587, 644
HspAI GCGC 1 cut(s) 273
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 2 cut(s) 372, 484
LguI GCTCTTC 1 cut(s) 651
LmnI GCTCC 2 cut(s) 165, 514
LpnPI CCDG 6 cut(s) 48, 152, 206, 213, 252, 579
Lsp1109I GCAGC 1 cut(s) 460
LweI GCATC 3 cut(s) 162, 337, 610
MaeI CTAG 2 cut(s) 204, 221
MaeIII GTNAC 2 cut(s) 540, 546
MalI GATC 2 cut(s) 374, 486
MboI GATC 2 cut(s) 372, 484
MboII GAAGA 5 cut(s) 101, 476, 599, 638, 645
MflI RGATCY 1 cut(s) 372
MluCI AATT 5 cut(s) 143, 405, 419, 433, 457
MlyI GAGTC 3 cut(s) 440, 548, 578
MmeI TCCRAC 2 cut(s) 106, 516
MseI TTAA 2 cut(s) 252, 603
MspA1I CMGCKG 1 cut(s) 694
MwoI GCNNNNNNNGC 3 cut(s) 272, 347, 449
NdeII GATC 2 cut(s) 372, 484
NlaIII CATG 7 cut(s) 82, 245, 307, 397, 491, 587, 644
NmuCI GTSAC 1 cut(s) 540
NspI RCATGY 1 cut(s) 644
NspV TTCGAA 2 cut(s) 97, 112
PagI TCATGA 2 cut(s) 303, 583
PciSI GCTCTTC 1 cut(s) 651
PfeI GAWTC 4 cut(s) 20, 43, 209, 287
PkrI GCNGC 1 cut(s) 475
PleI GAGTC 3 cut(s) 440, 547, 577
PpsI GAGTC 3 cut(s) 440, 547, 577
PsuI RGATCY 1 cut(s) 372
PvuII CAGCTG 1 cut(s) 694
RsaI GTAC 2 cut(s) 327, 632
RsaNI GTAC 2 cut(s) 326, 631
SapI GCTCTTC 1 cut(s) 651
SaqAI TTAA 2 cut(s) 252, 603
SatI GCNGC 1 cut(s) 474
Sau3AI GATC 2 cut(s) 372, 484
ScaI AGTACT 1 cut(s) 632
SchI GAGTC 3 cut(s) 440, 548, 578
SetI ASST 8 cut(s) 64, 162, 299, 334, 387, 475, 696, 712
SfaNI GCATC 3 cut(s) 162, 337, 610
SfuI TTCGAA 2 cut(s) 97, 112
SmlI CTYRAG 2 cut(s) 13, 527
SmoI CTYRAG 2 cut(s) 13, 527
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 5 cut(s) 143, 405, 419, 433, 457
SsiI CCGC 2 cut(s) 443, 662
SspI AATATT 1 cut(s) 598
SspMI CTAG 2 cut(s) 204, 221
TaaI ACNGT 3 cut(s) 257, 356, 546
TaqI TCGA 3 cut(s) 97, 112, 576
TaqII GACCGA 1 cut(s) 62
TasI AATT 5 cut(s) 143, 405, 419, 433, 457
TatI WGTACW 1 cut(s) 630
TfiI GAWTC 4 cut(s) 20, 43, 209, 287
Tru1I TTAA 2 cut(s) 252, 603
Tru9I TTAA 2 cut(s) 252, 603
TscAI CASTG 4 cut(s) 182, 361, 549, 630
TseFI GTSAC 1 cut(s) 540
TseI GCWGC 1 cut(s) 473
Tsp45I GTSAC 1 cut(s) 540
TspDTI ATGAA 5 cut(s) 231, 269, 320, 483, 600
TspRI CASTG 4 cut(s) 182, 361, 549, 630
XapI RAATTY 4 cut(s) 405, 419, 433, 457
XceI RCATGY 1 cut(s) 644
XspI CTAG 2 cut(s) 204, 221
ZrmI AGTACT 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.