RchiOBHm_Chr6g0312691

TAF RNA Polymerase I subunit A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002593
Physical Location & Seq
Forward (+)
69279526 .. 69286042
6517 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28131

Sequence Viewer

Length: 1869 bp
ATGGCTGAATCTCCTATACCAGAAATTCCGATTATTCCTGAAAGCCGGAAAAGAAAGTACAACGACGACGGCGACGAGGCAGCACTGTCGGGGCACCTAAAACGCATCGTTTTATCACTAAGCAAGCCGTCGACTCTGCTTGGCATCGGCGCCTCAAAACCTAGGGCGGTGCACCGCGCCAAGCTCGAAAAGCTTCTCCGGAAGCTCGTGATTCACCACAACTGGGTCGAGGCCAGCGGCGTCCTCAGCGTGTTGCTCGGCGGCGGAGCCAGCGACAGGTCGCCGGCGAACAACCGCTTCTTGTATTGGGTTTTGCTGGAAATGGTGGAGCGGTTGTGTGAGATGGAAAAGGAGGAGCGTTTGCCTGGTAATTACTCCAAGGAGGTGTGGATTAAGAATGTGTTTGAAGCTTGGGAGAAGAAGAATGATAAGATGAAGGCAGAGTTAGAAGAGTACAGACATGCTGTTGAACTTGAGCGCATCTCGCTCTCGCTTGCAAAAGGGAATCTTATGGAGGCTGAAGCCGGTGCTTTCGGTCTCATGCAAGCACATGGTTTTCGAAATGACCCTCTTCGAAATATGATTGTCGGATTGACATTCCAGCAATTGTGGTATTCCAAGCTCCCAAAAGAGATGCAGTGGAAGGAGGCTGACCAGTTTTACACTAGGGAATCAAATGAACGAGTTGCAGGCTCAGAGGGGCATGGCTCTATTAACAGTAACGAGGCTGGTAGCGCCATTCATTGTGATTCAGACACCTCTGTCATGAATGATAAAGTAGAGAATGTACCACCTATTGTTGCTGTTGATGCTGACAGTGGCTTACATAGAGAGATCTCTGTGGAGGTTGTTGACATGGAAGTAGAAATTTCTCCACTGAAATTTGAGACCCAAAATTTCTATGCGGACTCTGCTGAAAATTCAGAAGATGAAGCTGCTTTATCTGATCATGGTGGTCAAATGCAGTATGCTCCCATTTTCTCTGAACTTGAGGGGTTGGAGTCATTGTTACTGCCCATACGATTGCCAGAGTCTCTCGATAATCATGAAGATAAGAATATTTTTAATGACTATTACAAGGATGCAGTGAAGTACTTACGACATGCTCTTCACTCTTCACCCCCGGTATTGGTAGCCTTACATCCTTTGATACAGCTGTTGCTGATTGGAGGTCAAGTTAAAGAGGCCCTGGATGAGATTGAATATTGTTGTAATTTTTCAAACACAGCGCTGCCTACTCGATTAAGGTCTAGTCTTCTGCAGCAATTTGATTCTAATAACAAACCTGTGCTTTCCACTTGTCTGGAGGAAAACTTAAGGAAGGATCCTACATGTTGCGATTCATTGGAAAAGCTTGTTCTGTTGCATCAAAATGATAATTATAGTCCTGAGTCCCTGCTTGAAATGATAGCATTGCATTTAGATGCCACCAATGCTGAATACAACATATGGAGAGAGTATGCTATGTGTTTCCTAAAGCTTTCTCAGTATGAAGAGGACAGGATGTCGGTGTGTCTGAATGGAAATGAAGGTGGACATAAACCATGGTACTCTGTTTCTTTCAATAAGACCCCGAAAATATTTATAAAGGGACAATCTGGAAAGAATTGGAAATTGCGCTGTAGATGGTGGTCTACGCAGCACTTCAGCCATGATATTCTTGCATCAGAGATTGCAGCAGGTGATTTGGAGCTCCTAACTCACAAAGCAGCGAGTGCAGTGCATATGTATGGATCAGAGTTCTATTACGTTGTGGATGCTCTTTGCTGCTTAGAGAAAGAAAGTGAGAAGGACTTGCTCTGTTTTTTGCAAATGCACATTCGAAATTCTGTTCGAATTTATTCAAATATACGACAGAGAACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAF1_subA

Protein Analysis

622

Amino Acids

70.71

Weight (kDa)

5.44

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF1_subA PF14929 69 - 586 2.4e-69 TAF RNA Polymerase I subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1586
AarI CACCTGC 1 cut(s) 1670
AasI GACNNNNNNGTC 1 cut(s) 761
Acc36I ACCTGC 1 cut(s) 1670
AccB1I GGYRCC 2 cut(s) 93, 149
AccBSI CCGCTC 1 cut(s) 331
AccI GTMKAC 2 cut(s) 131, 1634
AccII CGCG 1 cut(s) 177
AccIII TCCGGA 1 cut(s) 198
AciI CCGC 8 cut(s) 167, 175, 237, 261, 264, 295, 331, 905
AclWI GGATC 3 cut(s) 1319, 1332, 1741
AcsI RAATTY 7 cut(s) 24, 867, 881, 895, 919, 1825, 1836
AcuI CTGAAG 2 cut(s) 540, 1630
AcyI GRCGYC 2 cut(s) 150, 240
AfaI GTAC 5 cut(s) 59, 455, 789, 1094, 1550
AfeI AGCGCT 1 cut(s) 1230
AfiI CCNNNNNNNGG 3 cut(s) 223, 276, 1129
AflII CTTAAG 1 cut(s) 1315
AflIII ACRYGT 1 cut(s) 1331
AgsI TTSAA 7 cut(s) 407, 470, 1202, 1221, 1403, 1564, 1845
AhdI GACNNNNNGTC 1 cut(s) 1504
AjnI CCWGG 2 cut(s) 364, 1188
Alw21I GWGCWC 2 cut(s) 174, 1695
Alw26I GTCTC 3 cut(s) 542, 881, 1038
Alw44I GTGCAC 1 cut(s) 170
AlwI GGATC 3 cut(s) 1319, 1332, 1741
Aor13HI TCCGGA 1 cut(s) 198
Aor51HI AGCGCT 1 cut(s) 1230
AoxI GGCC 2 cut(s) 231, 1185
ApaLI GTGCAC 1 cut(s) 170
ApeKI GCWGC 8 cut(s) 80, 935, 1231, 1261, 1639, 1676, 1709, 1767
ApoI RAATTY 7 cut(s) 24, 867, 881, 895, 919, 1825, 1836
Asp700I GAANNNNTTC 2 cut(s) 192, 1840
AspA2I CCTAGG 1 cut(s) 161
AspLEI GCGC 6 cut(s) 152, 179, 480, 737, 1231, 1620
AspS9I GGNCC 1 cut(s) 1186
AsuC2I CCSGG 1 cut(s) 1124
AsuHPI GGTGA 3 cut(s) 206, 1110, 1694
AsuII TTCGAA 4 cut(s) 559, 574, 1822, 1834
AvrII CCTAGG 1 cut(s) 161
BaeGI GKGCMC 2 cut(s) 96, 174
BaeI ACNNNNGTAYC 2 cut(s) 1142, 1175
BamHI GGATCC 1 cut(s) 1324
BanI GGYRCC 2 cut(s) 93, 149
BanII GRGCYC 1 cut(s) 1695
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 1247
Bbv12I GWGCWC 2 cut(s) 174, 1695
BbvCI CCTCAGC 1 cut(s) 245
BbvI GCAGC 8 cut(s) 92, 922, 1218, 1273, 1651, 1688, 1721, 1754
BccI CCATC 2 cut(s) 337, 1620
BceAI ACGGC 2 cut(s) 85, 112
BcgI CGANNNNNNTGC 4 cut(s) 69, 103, 1702, 1736
BciT130I CCWGG 2 cut(s) 366, 1190
BclI TGATCA 1 cut(s) 946
BcnI CCSGG 1 cut(s) 1124
BcoDI GTCTC 3 cut(s) 542, 881, 1038
BfaI CTAG 3 cut(s) 162, 666, 1251
BfmI CTRYAG 2 cut(s) 1259, 1621
BfoI RGCGCY 3 cut(s) 153, 738, 1232
BfrI CTTAAG 1 cut(s) 1315
BfuAI ACCTGC 1 cut(s) 1670
BglII AGATCT 1 cut(s) 834
BlnI CCTAGG 1 cut(s) 161
BmcAI AGTACT 1 cut(s) 1094
Bme1390I CCNGG 3 cut(s) 366, 1124, 1190
BmeRI GACNNNNNGTC 1 cut(s) 1504
BmgT120I GGNCC 1 cut(s) 1186
BmiI GGNNCC 4 cut(s) 95, 151, 268, 1326
BmrFI CCNGG 3 cut(s) 366, 1124, 1190
BmrI ACTGGG 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 1247
BplI GAGNNNNNCTC 2 cut(s) 467, 499
BpmI CTGGAG 1 cut(s) 1325
Bpu10I CCTNAGC 1 cut(s) 245
Bpu14I TTCGAA 4 cut(s) 559, 574, 1822, 1834
BpuEI CTTGAG 2 cut(s) 494, 1010
BpuMI CCSGG 1 cut(s) 1124
BsaHI GRCGYC 2 cut(s) 150, 240
BsaI GGTCTC 2 cut(s) 542, 881
BsaJI CCNNGG 5 cut(s) 161, 378, 1122, 1188, 1544
BsaWI WCCGGW 1 cut(s) 198
BsaXI ACNNNNNCTCC 6 cut(s) 320, 350, 992, 1022, 1161, 1191
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 276, 1129
Bse118I RCCGGY 2 cut(s) 283, 524
Bse1I ACTGG 2 cut(s) 227, 655
Bse3DI GCAATG 1 cut(s) 1412
BseAI TCCGGA 1 cut(s) 198
BseBI CCWGG 2 cut(s) 366, 1190
BseDI CCNNGG 5 cut(s) 161, 378, 1122, 1188, 1544
BseGI GGATG 5 cut(s) 1087, 1141, 1198, 1509, 1762
BseLI CCNNNNNNNGG 3 cut(s) 223, 276, 1129
BseMI GCAATG 1 cut(s) 1412
BseMII CTCAG 4 cut(s) 259, 708, 1380, 1499
BseNI ACTGG 2 cut(s) 227, 655
BseRI GAGGAG 1 cut(s) 368
BseSI GKGCMC 2 cut(s) 96, 174
BseXI GCAGC 8 cut(s) 92, 922, 1218, 1273, 1651, 1688, 1721, 1754
BsgI GTGCAG 1 cut(s) 1737
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 233, 1187
BshNI GGYRCC 2 cut(s) 93, 149
BsiHKAI GWGCWC 2 cut(s) 174, 1695
BsiSI CCGG 5 cut(s) 46, 199, 284, 525, 1124
BslFI GGGAC 2 cut(s) 1378, 1605
BslI CCNNNNNNNGG 3 cut(s) 223, 276, 1129
BsmAI GTCTC 3 cut(s) 542, 881, 1038
BsmFI GGGAC 2 cut(s) 1378, 1605
BsnI GGCC 2 cut(s) 233, 1187
Bso31I GGTCTC 2 cut(s) 542, 881
Bsp119I TTCGAA 4 cut(s) 559, 574, 1822, 1834
Bsp1286I GDGCHC 3 cut(s) 96, 174, 1695
Bsp13I TCCGGA 1 cut(s) 198
Bsp143I GATC 4 cut(s) 834, 946, 1324, 1733
Bsp19I CCATGG 1 cut(s) 1544
BspACI CCGC 8 cut(s) 167, 175, 237, 261, 264, 295, 331, 905
BspANI GGCC 2 cut(s) 233, 1187
BspCNI CTCAG 4 cut(s) 258, 707, 1381, 1498
BspEI TCCGGA 1 cut(s) 198
BspFNI CGCG 1 cut(s) 177
BspHI TCATGA 2 cut(s) 765, 1045
BspLI GGNNCC 4 cut(s) 95, 151, 268, 1326
BspMAI CTGCAG 1 cut(s) 1263
BspMI ACCTGC 1 cut(s) 1670
BspPI GGATC 3 cut(s) 1319, 1332, 1741
BspQI GCTCTTC 1 cut(s) 1113
BspT104I TTCGAA 4 cut(s) 559, 574, 1822, 1834
BspT107I GGYRCC 2 cut(s) 93, 149
BspTI CTTAAG 1 cut(s) 1315
BspTNI GGTCTC 2 cut(s) 542, 881
BsrBI CCGCTC 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 1412
BsrFI RCCGGY 2 cut(s) 283, 524
BsrI ACTGG 2 cut(s) 227, 655
BssAI RCCGGY 2 cut(s) 283, 524
BssECI CCNNGG 5 cut(s) 161, 378, 1122, 1188, 1544
BssMI GATC 4 cut(s) 834, 946, 1324, 1733
BssNI GRCGYC 2 cut(s) 150, 240
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 3 cut(s) 161, 378, 1544
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 366, 1190
Bst4CI ACNGT 3 cut(s) 87, 719, 818
Bst6I CTCTTC 5 cut(s) 444, 576, 1113, 1120, 1488
BstACI GRCGYC 2 cut(s) 150, 240
BstAFI CTTAAG 1 cut(s) 1315
BstAPI GCANNNNNTGC 1 cut(s) 1715
BstBI TTCGAA 4 cut(s) 559, 574, 1822, 1834
BstC8I GCNNGC 7 cut(s) 125, 235, 271, 285, 495, 546, 691
BstDEI CTNAG 6 cut(s) 119, 245, 694, 1389, 1485, 1771
BstDSI CCRYGG 1 cut(s) 1544
BstF5I GGATG 5 cut(s) 1087, 1141, 1198, 1509, 1762
BstFNI CGCG 1 cut(s) 177
BstH2I RGCGCY 3 cut(s) 153, 738, 1232
BstHHI GCGC 6 cut(s) 152, 179, 480, 737, 1231, 1620
BstKTI GATC 4 cut(s) 837, 949, 1327, 1736
BstMAI GTCTC 3 cut(s) 542, 881, 1038
BstMBI GATC 4 cut(s) 834, 946, 1324, 1733
BstMWI GCNNNNNNNGC 9 cut(s) 190, 246, 270, 484, 734, 809, 911, 1433, 1715
BstNI CCWGG 2 cut(s) 366, 1190
BstNSI RCATGY 3 cut(s) 464, 1106, 1335
BstSCI CCNGG 3 cut(s) 364, 1122, 1188
BstSFI CTRYAG 2 cut(s) 1259, 1621
BstSLI GKGCMC 2 cut(s) 96, 174
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 8 cut(s) 92, 922, 1218, 1273, 1651, 1688, 1721, 1754
BstV2I GAAGAC 1 cut(s) 1247
BstX2I RGATCY 2 cut(s) 834, 1324
BstXI CCANNNNNNTGG 1 cut(s) 1303
BstYI RGATCY 2 cut(s) 834, 1324
BsuRI GGCC 2 cut(s) 233, 1187
BtgI CCRYGG 1 cut(s) 1544
BtsCI GGATG 5 cut(s) 1087, 1141, 1198, 1509, 1762
BtsI GCAGTG 3 cut(s) 644, 1092, 1725
BtsIMutI CAGTG 6 cut(s) 83, 644, 823, 875, 1092, 1725
BveI ACCTGC 1 cut(s) 1670
Cac8I GCNNGC 7 cut(s) 125, 235, 271, 285, 495, 546, 691
CciI TCATGA 2 cut(s) 765, 1045
CfoI GCGC 6 cut(s) 152, 179, 480, 737, 1231, 1620
Cfr10I RCCGGY 2 cut(s) 283, 524
Cfr13I GGNCC 1 cut(s) 1186
CseI GACGC 1 cut(s) 229
Csp6I GTAC 5 cut(s) 58, 454, 788, 1093, 1549
CviQI GTAC 5 cut(s) 58, 454, 788, 1093, 1549
DdeI CTNAG 6 cut(s) 119, 245, 694, 1389, 1485, 1771
DinI GGCGCC 1 cut(s) 151
DpnI GATC 4 cut(s) 836, 948, 1326, 1735
DpnII GATC 4 cut(s) 834, 946, 1324, 1733
DrdI GACNNNNNNGTC 1 cut(s) 761
DriI GACNNNNNGTC 1 cut(s) 1504
DseDI GACNNNNNNGTC 1 cut(s) 761
Eam1104I CTCTTC 5 cut(s) 444, 576, 1113, 1120, 1488
Eam1105I GACNNNNNGTC 1 cut(s) 1504
EarI CTCTTC 5 cut(s) 444, 576, 1113, 1120, 1488
EciI GGCGGA 1 cut(s) 279
Ecl136II GAGCTC 1 cut(s) 1693
Eco130I CCWWGG 3 cut(s) 161, 378, 1544
Eco24I GRGCYC 1 cut(s) 1695
Eco31I GGTCTC 2 cut(s) 542, 881
Eco47III AGCGCT 1 cut(s) 1230
Eco53kI GAGCTC 1 cut(s) 1693
Eco57I CTGAAG 2 cut(s) 540, 1630
EcoICRI GAGCTC 1 cut(s) 1693
EcoO109I RGGNCCY 1 cut(s) 1186
EcoRII CCWGG 2 cut(s) 364, 1188
EcoT14I CCWWGG 3 cut(s) 161, 378, 1544
EcoT38I GRGCYC 1 cut(s) 1695
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
ErhI CCWWGG 3 cut(s) 161, 378, 1544
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FaqI GGGAC 2 cut(s) 1378, 1605
FauNDI CATATG 2 cut(s) 1448, 1725
FbaI TGATCA 1 cut(s) 946
FblI GTMKAC 2 cut(s) 131, 1634
FokI GGATG 5 cut(s) 1094, 1128, 1205, 1516, 1769
FriOI GRGCYC 1 cut(s) 1695
FspBI CTAG 3 cut(s) 162, 666, 1251
GlaI GCGC 6 cut(s) 151, 178, 479, 736, 1230, 1619
GsuI CTGGAG 1 cut(s) 1325
HaeII RGCGCY 3 cut(s) 153, 738, 1232
HaeIII GGCC 2 cut(s) 233, 1187
HapII CCGG 5 cut(s) 46, 199, 284, 525, 1124
HgaI GACGC 1 cut(s) 229
HhaI GCGC 6 cut(s) 152, 179, 480, 737, 1231, 1620
Hin1I GRCGYC 2 cut(s) 150, 240
Hin6I GCGC 6 cut(s) 150, 177, 478, 735, 1229, 1618
HinP1I GCGC 6 cut(s) 150, 177, 478, 735, 1229, 1618
HincII GTYRAC 2 cut(s) 132, 853
HindII GTYRAC 2 cut(s) 132, 853
HindIII AAGCTT 4 cut(s) 191, 408, 1352, 1478
HpaII CCGG 5 cut(s) 46, 199, 284, 525, 1124
HphI GGTGA 3 cut(s) 206, 1110, 1694
Hpy166II GTNNAC 5 cut(s) 132, 172, 853, 1535, 1635
Hpy188III TCNNGA 9 cut(s) 38, 199, 208, 766, 1037, 1046, 1304, 1388, 1599
Hpy8I GTNNAC 5 cut(s) 132, 172, 853, 1535, 1635
Hpy99I CGWCG 4 cut(s) 68, 71, 77, 133
HpyAV CCTTC 5 cut(s) 430, 637, 1315, 1523, 1783
HpyCH4III ACNGT 3 cut(s) 87, 719, 818
HpyCH4IV ACGT 1 cut(s) 1749
HpyF10VI GCNNNNNNNGC 9 cut(s) 190, 246, 270, 484, 734, 809, 911, 1433, 1715
HpyF3I CTNAG 6 cut(s) 119, 245, 694, 1389, 1485, 1771
HpySE526I ACGT 1 cut(s) 1749
Hsp92I GRCGYC 2 cut(s) 150, 240
HspAI GCGC 6 cut(s) 150, 177, 478, 735, 1229, 1618
KasI GGCGCC 1 cut(s) 149
Kpn2I TCCGGA 1 cut(s) 198
KroI GCCGGC 1 cut(s) 283
KroNI GCCGGC 1 cut(s) 285
Ksp22I TGATCA 1 cut(s) 946
Kzo9I GATC 4 cut(s) 834, 946, 1324, 1733
LguI GCTCTTC 1 cut(s) 1113
LmnI GCTCC 7 cut(s) 266, 328, 355, 627, 976, 1690, 1698
Lsp1109I GCAGC 8 cut(s) 92, 922, 1218, 1273, 1651, 1688, 1721, 1754
MaeI CTAG 3 cut(s) 162, 666, 1251
MaeII ACGT 1 cut(s) 1749
MaeIII GTNAC 2 cut(s) 719, 1008
MalI GATC 4 cut(s) 836, 948, 1326, 1735
MbiI CCGCTC 1 cut(s) 331
MboI GATC 4 cut(s) 834, 946, 1324, 1733
MfeI CAATTG 1 cut(s) 605
MflI RGATCY 2 cut(s) 834, 1324
MhlI GDGCHC 3 cut(s) 96, 174, 1695
Mly113I GGCGCC 1 cut(s) 150
MlyI GAGTC 5 cut(s) 127, 902, 1010, 1040, 1400
MmeI TCCRAC 2 cut(s) 568, 978
MreI CGCCGGCG 1 cut(s) 283
MroI TCCGGA 1 cut(s) 198
MroNI GCCGGC 1 cut(s) 283
MroXI GAANNNNTTC 2 cut(s) 192, 1840
MseI TTAA 6 cut(s) 393, 714, 1065, 1179, 1244, 1316
MslI CAYNNNNRTG 3 cut(s) 1371, 1422, 1728
MspA1I CMGCKG 2 cut(s) 237, 1156
MspCI CTTAAG 1 cut(s) 1315
MspI CCGG 5 cut(s) 46, 199, 284, 525, 1124
MspR9I CCNGG 3 cut(s) 366, 1124, 1190
MunI CAATTG 1 cut(s) 605
MvaI CCWGG 2 cut(s) 366, 1190
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 9 cut(s) 190, 246, 270, 484, 734, 809, 911, 1433, 1715
NaeI GCCGGC 1 cut(s) 285
NarI GGCGCC 1 cut(s) 150
NciI CCSGG 1 cut(s) 1124
NcoI CCATGG 1 cut(s) 1544
NdeI CATATG 2 cut(s) 1448, 1725
NdeII GATC 4 cut(s) 834, 946, 1324, 1733
NgoMIV GCCGGC 1 cut(s) 283
NlaIV GGNNCC 4 cut(s) 95, 151, 268, 1326
NmeAIII GCCGAG 1 cut(s) 237
NspI RCATGY 3 cut(s) 464, 1106, 1335
NspV TTCGAA 4 cut(s) 559, 574, 1822, 1834
PagI TCATGA 2 cut(s) 765, 1045
PaqCI CACCTGC 1 cut(s) 1670
PciI ACATGT 1 cut(s) 1331
PciSI GCTCTTC 1 cut(s) 1113
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 72
PdiI GCCGGC 1 cut(s) 285
PdmI GAANNNNTTC 2 cut(s) 192, 1840
PfeI GAWTC 7 cut(s) 8, 211, 505, 671, 749, 1271, 1340
PleI GAGTC 5 cut(s) 127, 902, 1009, 1039, 1399
PluTI GGCGCC 1 cut(s) 153
PpsI GAGTC 5 cut(s) 127, 902, 1009, 1039, 1399
PscI ACATGT 1 cut(s) 1331
PsiI TTATAA 1 cut(s) 1586
Psp124BI GAGCTC 1 cut(s) 1695
Psp6I CCWGG 2 cut(s) 364, 1188
PspGI CCWGG 2 cut(s) 364, 1188
PspN4I GGNNCC 4 cut(s) 95, 151, 268, 1326
PspPI GGNCC 1 cut(s) 1186
PstI CTGCAG 1 cut(s) 1263
PsuI RGATCY 2 cut(s) 834, 1324
PvuII CAGCTG 1 cut(s) 1156
RsaI GTAC 5 cut(s) 59, 455, 789, 1094, 1550
RsaNI GTAC 5 cut(s) 58, 454, 788, 1093, 1549
RseI CAYNNNNRTG 3 cut(s) 1371, 1422, 1728
SacI GAGCTC 1 cut(s) 1695
SalI GTCGAC 1 cut(s) 130
SapI GCTCTTC 1 cut(s) 1113
SaqAI TTAA 6 cut(s) 393, 714, 1065, 1179, 1244, 1316
Sau3AI GATC 4 cut(s) 834, 946, 1324, 1733
Sau96I GGNCC 1 cut(s) 1186
ScaI AGTACT 1 cut(s) 1094
SchI GAGTC 5 cut(s) 127, 902, 1010, 1040, 1400
ScrFI CCNGG 3 cut(s) 366, 1124, 1190
SduI GDGCHC 3 cut(s) 96, 174, 1695
SfcI CTRYAG 2 cut(s) 1259, 1621
SfoI GGCGCC 1 cut(s) 151
SfuI TTCGAA 4 cut(s) 559, 574, 1822, 1834
SgrAI CRCCGGYG 1 cut(s) 283
SmiMI CAYNNNNRTG 3 cut(s) 1371, 1422, 1728
SmlI CTYRAG 3 cut(s) 473, 989, 1315
SmoI CTYRAG 3 cut(s) 473, 989, 1315
SsiI CCGC 8 cut(s) 167, 175, 237, 261, 264, 295, 331, 905
SspDI GGCGCC 1 cut(s) 149
SspI AATATT 3 cut(s) 1060, 1205, 1581
SspMI CTAG 3 cut(s) 162, 666, 1251
SstI GAGCTC 1 cut(s) 1695
StyD4I CCNGG 3 cut(s) 364, 1122, 1188
StyI CCWWGG 3 cut(s) 161, 378, 1544
TaaI ACNGT 3 cut(s) 87, 719, 818
TaiI ACGT 1 cut(s) 1752
TaqI TCGA 9 cut(s) 131, 186, 228, 559, 574, 1038, 1240, 1822, 1834
TaqII GACCGA 1 cut(s) 524
TatI WGTACW 3 cut(s) 57, 453, 1092
TauI GCSGC 2 cut(s) 240, 264
TfiI GAWTC 7 cut(s) 8, 211, 505, 671, 749, 1271, 1340
Tru1I TTAA 6 cut(s) 393, 714, 1065, 1179, 1244, 1316
Tru9I TTAA 6 cut(s) 393, 714, 1065, 1179, 1244, 1316
TscAI CASTG 6 cut(s) 90, 644, 823, 882, 1092, 1725
TseI GCWGC 8 cut(s) 80, 935, 1231, 1261, 1639, 1676, 1709, 1767
TspDTI ATGAA 9 cut(s) 449, 693, 731, 782, 945, 1062, 1332, 1506, 1542
TspRI CASTG 6 cut(s) 90, 644, 823, 882, 1092, 1725
Vha464I CTTAAG 1 cut(s) 1315
VneI GTGCAC 1 cut(s) 170
XapI RAATTY 7 cut(s) 24, 867, 881, 895, 919, 1825, 1836
XceI RCATGY 3 cut(s) 464, 1106, 1335
XmaJI CCTAGG 1 cut(s) 161
XmiI GTMKAC 2 cut(s) 131, 1634
XmnI GAANNNNTTC 2 cut(s) 192, 1840
XspI CTAG 3 cut(s) 162, 666, 1251
ZrmI AGTACT 1 cut(s) 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.