Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002593

Physical Location & Seq

Genomic Coordinates Forward (+)

29083631 .. 29085703

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013275

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCTGTACATCAACGCCACAAGACCGAGGGTGGTGCACTGCATCAAGCTCGAAAAGATTGTCTGGAGGCTCATGATTCACCACAACTGGGTTGACGGCAGCGGCGTCCTCGCCATGTTGCTCGGCAGCGGAGCCAACGACACATCATCGGAGAACAACCGCTTCATGTATTGGGTTTTGTTAGAAATGGCAAAGCGGTTGTCTGAGATGGAAAAGGAGGAGCGTTTGCCTGGGTATTACTCGAAGGAGGTGTGGATTAAGAATGTGTTTGAAGCTTGGGAGAAGAAGAGTGATCTAAATGCTCCTGCTACTGCTATTGCTCTTGCTACTGCTCCTGCTCCTGCTATTGCTACTGCTACTGCTCCTGCTGCTACTATTGCTACTGCTACTGCTACTGCTCTTGCTACTGCAAATGAAGATTTTGTCTTCAGTGCAAGGATGTTGTGGATTGCTGCAATCGGTATAGCCTTGGGATGGGACTCTGTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAF1_subA

Protein Analysis

164

Amino Acids

17.93

Weight (kDa)

6.29

Isoelectric Point (pI)

29.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53200 AT1G53200
fragaria_vesca	FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060
malus_domestica	MD03G1237200.v1.1 MD10G1064700.v1.1
prunus_persica	Prupe.4G172200_v2.0.a1
pyrus_communis	pycom03g18310
rosa_chinensis	RchiOBHm_Chr5g0031851 RchiOBHm_Chr6g0312691
rosa_laevigata	RLG00000013275 RLG00000033353
rosa_multiflora	Rmu_sc0002188.1_g000001 Rmu_sc0007517.1_g000001 Rmu_sc0011639.1_g000001 Rmu_sc0012252.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048420
rosa_rugosa	Rorug04G0355200 Rorug05G0128100 Rorug05G0128200 Rorug06G0398300 Rorug06G0398300 Rorug06G0398400 Rorug06G0398500
rosa_samantha	Rh5AG222300 Rh5BG222600 Rh5CG245700 Rh5DG227400 Rh6AG515800 Rh6BG527100 Rh6CG532000 Rh6DG518000
rosa_wichuraiana	Rw5G020260 Rw6G044820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	102, 129, 160, 196
AcuI	CTGAAG	1 cut(s)	412
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	88, 474
AgsI	TTSAA	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	2 cut(s)	49, 275
AluI	AGCT	2 cut(s)	49, 275
Alw21I	GWGCWC	1 cut(s)	39
Alw44I	GTGCAC	1 cut(s)	35
ApaLI	GTGCAC	1 cut(s)	35
ApeKI	GCWGC	4 cut(s)	99, 126, 368, 452
ArsI	GACNNNNNNTTYG	4 cut(s)	45, 77, 185, 217
AsuHPI	GGTGA	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	4 cut(s)	111, 138, 355, 439
BccI	CCATC	2 cut(s)	202, 468
BceAI	ACGGC	1 cut(s)	112
BcgI	CGANNNNNNTGC	4 cut(s)	16, 31, 50, 65
BciT130I	CCWGG	1 cut(s)	231
BisI	GCNGC	5 cut(s)	100, 103, 127, 369, 453
BlsI	GCNGC	5 cut(s)	101, 104, 128, 370, 454
Bme1390I	CCNGG	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	231
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	1 cut(s)	51
BmuI	ACTGGG	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	418
BpmI	CTGGAG	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	3 cut(s)	26, 230, 468
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 474
Bse1I	ACTGG	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	26, 230, 468
BseGI	GGATG	2 cut(s)	444, 479
BseLI	CCNNNNNNNGG	2 cut(s)	88, 474
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	39
BseXI	GCAGC	4 cut(s)	111, 138, 355, 439
BsiHKAI	GWGCWC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	88, 474
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp1407I	TGTACA	1 cut(s)	6
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	4 cut(s)	102, 129, 160, 196
BspCNI	CTCAG	1 cut(s)	196
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	133
BsrGI	TGTACA	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	26, 230, 468
BssMI	GATC	1 cut(s)	292
BssNI	GRCGYC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	231
Bst6I	CTCTTC	1 cut(s)	281
BstACI	GRCGYC	1 cut(s)	105
BstAUI	TGTACA	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	444, 479
BstKTI	GATC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 377
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSLI	GKGCMC	1 cut(s)	39
BstV1I	GCAGC	4 cut(s)	111, 138, 355, 439
BstV2I	GAAGAC	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	444, 479
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	2 cut(s)	37, 436
CciI	TCATGA	1 cut(s)	72
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	3 cut(s)	73, 115, 166
CviJI	RGCY	5 cut(s)	49, 70, 134, 275, 467
CviKI_1	RGCY	5 cut(s)	49, 70, 134, 275, 467
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	468
Eco57I	CTGAAG	1 cut(s)	412
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	3 cut(s)	76, 118, 169
FaiI	YATR	4 cut(s)	74, 116, 167, 464
FatI	CATG	3 cut(s)	72, 114, 165
Fnu4HI	GCNGC	5 cut(s)	100, 103, 127, 369, 453
FokI	GGATG	2 cut(s)	451, 486
Fsp4HI	GCNGC	5 cut(s)	100, 103, 127, 369, 453
GluI	GCNGC	5 cut(s)	100, 103, 127, 369, 453
GsuI	CTGGAG	1 cut(s)	85
HgaI	GACGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	3 cut(s)	76, 118, 169
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	273
HinfI	GANTC	2 cut(s)	76, 479
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	37, 94
Hpy188I	TCNGA	2 cut(s)	151, 205
Hpy188III	TCNNGA	2 cut(s)	64, 73
Hpy8I	GTNNAC	2 cut(s)	37, 94
HpyAV	CCTTC	1 cut(s)	238
HpyCH4V	TGCA	5 cut(s)	37, 42, 410, 434, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 377
HpyF3I	CTNAG	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	76, 118, 169
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	6 cut(s)	131, 220, 307, 337, 343, 367
LpnPI	CCDG	8 cut(s)	49, 73, 216, 243, 318, 348, 354, 378
Lsp1109I	GCAGC	4 cut(s)	111, 138, 355, 439
LweI	GCATC	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	4 cut(s)	295, 298, 418, 428
MhlI	GDGCHC	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	473
MnlI	CCTC	5 cut(s)	21, 60, 119, 211, 241
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	2 cut(s)	102, 129
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	368, 377
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	3 cut(s)	76, 118, 169
NlaIV	GGNNCC	1 cut(s)	133
NmeAIII	GCCGAG	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	484
PagI	TCATGA	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	5 cut(s)	101, 104, 128, 370, 454
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	133
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	5 cut(s)	100, 103, 127, 369, 453
Sau3AI	GATC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	3 cut(s)	51, 252, 277
SfaNI	GCATC	1 cut(s)	51
SsiI	CCGC	4 cut(s)	102, 129, 160, 196
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	468
TaqI	TCGA	2 cut(s)	51, 242
TaqII	GACCGA	1 cut(s)	40
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	2 cut(s)	44, 436
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	4 cut(s)	99, 126, 368, 452
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	2 cut(s)	154, 429
TspRI	CASTG	2 cut(s)	44, 436
VneI	GTGCAC	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.