Rh5CG245700

TAF RNA Polymerase I subunit A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002593
Physical Location & Seq
Forward (+)
25662181 .. 25674103
11923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG245700.1

Sequence Viewer

Length: 1728 bp
ATGGCTGAATCTCCCATACAAGAAATTCCCATTATTCCAGAAAACCGGAAAAGAAAGTACACCGACGACGGCGACGAGGCAGCACTGTCGGGGCACCTAAAACGCGTCGTTTTATCACTAAGCAAGCCGTCGACTCTGCTCGGCATCGGCGCCACAAAACCTAGGGCGGTGCACCGCGCCAAGCTCGAAAAGCTTCTCCGGAAGCTCGTGATTCACCACAACTGGGTCGACGCCAGCGGCGTCCTCAGCGTGTTGCTCGGCGGCGGAGCCAGCGACCGGTCGCCGGCGAACAACCGCTTCATGTATTGGGTTTTGCTGGAAATGGTGGAGCGGTTGTCTGAGATGGAAAAGGAGGAGCGTTTGCCTGGTAATTACTCCAAGGAGGTGTGGATTAAGAAAGTGTTTGAAGCTTGGGAGAAGAAGAATGGTAAGATGAAGGCAGAGTTAGAAGAGTACAGACATGCTGTTGAACTTGAGCGAATCTCCCTCTCGCTTGCAAAAGGGAATCTTATGGAGGCTGAAGCTGGTGCTTTCGGTCTCATGCAACCAAATGGTTTTCGAAATGACCCTCTTCGAAATATGATTGTCGGATTGACATTCCAGAAATTGTGGTATTCCAAGCTCCCAAAAGAGATGCAGTGGAGGGAGGCTGACCAGTTTTACACTAGGGAATCAAATGAACTAGTTGCAGGCTCAGAGGGGCATGGCTCTATTAACAGTAACGAGGCTGGTAGCGCCATTCATTGTGATTCAGACACCTCTGTCATGAATGATAAAGTAGAGAATGTACCACCTATTGTTGCTGTTGATGCTGACAGTGGCTTACATAGAGAGATCTTTGTGGAGGTTGATGACATGGAAGTAGAAATTTCTCCACCGAAATTTGAGACCCAAAATTTCTATGTGGACTCTGCTGAAAATTCGGAAGATGAAGCTGCTTTATCTGATCATGGTGGTCAAATGCAGTATGCTCCCATTTTCTCTGAACTTGAGGGGTTGGAGTCACTGTTACTACCCATACGATTGCCAGAGTCTCTCGATAATCATGAAGATAAGAATATTTTTAATGACTATTACAAGGATGCAGTGAAGTACTTACGACATGCTCTTCACTCTTCATCCCCGGTATTGGTAGCCTTACATCCTTTGATACAGCTGTTGCTGATTGGAGGTCAAGTTAAAGAGGCCCTAGATGAGATTGAATATTGTTGTAATTTTTCAAACACAGCGCTGCCTACTCGATTAAGGTCTAGTCTTCTGCAGCAATTTGATTCTAATAACAAACCTGTGCTTTCCACTTGTCTGGAGGAAAACTTAAGGAAGGATCCTACATGTTCCGATTCATTGGAAAAGCTTGTTCTGTTGCATCAAAATGATAATTATAGTCCTGAGTCCCTGCTTGAAATGATAGCTTTGCATTTAGATGCCACCAATGCTGAATACAACATATGGAGAGAGTATGCTATGTGTTTCCTGAAGCTTTCTCAGTATGAAGAGGACAAGATGTCGGTGTGTCTGAATGGAAATGAAAGTGGACATAAACCACGGTACTCTGTTTCTTTCAATAAGACCCCGAAAATATTTATAAAGGGACAATCTGGAAAGAATTGGAAATTGCGCTGTAGATGGTGGTCTACGCGGCACTTCAGCCATGATATTCTTGCATCAGAGATTGCAGCAGGTATATATCACCTTTATCCCCAAGTTGTCCCAGTTTCTATACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAF1_subA

Protein Analysis

575

Amino Acids

65.23

Weight (kDa)

5.49

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF1_subA PF14929 69 - 560 4.1e-62 TAF RNA Polymerase I subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1586
AasI GACNNNNNNGTC 1 cut(s) 761
Acc36I ACCTGC 1 cut(s) 1670
AccB1I GGYRCC 2 cut(s) 93, 149
AccBSI CCGCTC 1 cut(s) 331
AccI GTMKAC 3 cut(s) 131, 228, 1634
AccII CGCG 3 cut(s) 105, 177, 1639
AccIII TCCGGA 1 cut(s) 198
AciI CCGC 8 cut(s) 167, 175, 237, 261, 264, 295, 331, 1639
AclWI GGATC 2 cut(s) 1319, 1332
AcsI RAATTY 5 cut(s) 24, 867, 881, 895, 919
AcuI CTGAAG 3 cut(s) 540, 1496, 1630
AcyI GRCGYC 3 cut(s) 150, 231, 240
AfaI GTAC 5 cut(s) 59, 455, 789, 1094, 1550
AfeI AGCGCT 1 cut(s) 1230
AfiI CCNNNNNNNGG 4 cut(s) 223, 276, 283, 1129
AflII CTTAAG 1 cut(s) 1315
AflIII ACRYGT 2 cut(s) 103, 1331
AgeI ACCGGT 1 cut(s) 276
AgsI TTSAA 6 cut(s) 407, 470, 1202, 1221, 1403, 1564
AhdI GACNNNNNGTC 1 cut(s) 1504
AhlI ACTAGT 1 cut(s) 682
AjnI CCWGG 1 cut(s) 364
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 3 cut(s) 542, 881, 1038
Alw44I GTGCAC 1 cut(s) 170
AlwI GGATC 2 cut(s) 1319, 1332
Aor13HI TCCGGA 1 cut(s) 198
Aor51HI AGCGCT 1 cut(s) 1230
AoxI GGCC 1 cut(s) 1185
ApaLI GTGCAC 1 cut(s) 170
ApeKI GCWGC 5 cut(s) 80, 935, 1231, 1261, 1676
ApoI RAATTY 5 cut(s) 24, 867, 881, 895, 919
AsiGI ACCGGT 1 cut(s) 276
Asp700I GAANNNNTTC 1 cut(s) 192
AspA2I CCTAGG 1 cut(s) 161
AspLEI GCGC 5 cut(s) 152, 179, 737, 1231, 1620
AspS9I GGNCC 1 cut(s) 1186
AsuC2I CCSGG 1 cut(s) 1124
AsuHPI GGTGA 2 cut(s) 206, 1682
AsuII TTCGAA 2 cut(s) 559, 574
AvrII CCTAGG 1 cut(s) 161
BaeGI GKGCMC 2 cut(s) 96, 174
BaeI ACNNNNGTAYC 2 cut(s) 1142, 1175
BamHI GGATCC 1 cut(s) 1324
BanI GGYRCC 2 cut(s) 93, 149
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 1247
Bbv12I GWGCWC 1 cut(s) 174
BbvCI CCTCAGC 1 cut(s) 245
BbvI GCAGC 5 cut(s) 92, 922, 1218, 1273, 1688
BccI CCATC 2 cut(s) 337, 1620
BceAI ACGGC 2 cut(s) 85, 112
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BciT130I CCWGG 1 cut(s) 366
BclI TGATCA 1 cut(s) 946
BcnI CCSGG 1 cut(s) 1124
BcoDI GTCTC 3 cut(s) 542, 881, 1038
BcuI ACTAGT 1 cut(s) 682
BfaI CTAG 5 cut(s) 162, 666, 683, 1190, 1251
BfmI CTRYAG 2 cut(s) 1259, 1621
BfoI RGCGCY 3 cut(s) 153, 738, 1232
BfrI CTTAAG 1 cut(s) 1315
BfuAI ACCTGC 1 cut(s) 1670
BglII AGATCT 1 cut(s) 834
BisI GCNGC 8 cut(s) 81, 238, 262, 936, 1232, 1262, 1640, 1677
BlnI CCTAGG 1 cut(s) 161
BlsI GCNGC 8 cut(s) 82, 239, 263, 937, 1233, 1263, 1641, 1678
BmcAI AGTACT 1 cut(s) 1094
Bme1390I CCNGG 2 cut(s) 366, 1124
BmeRI GACNNNNNGTC 1 cut(s) 1504
BmgT120I GGNCC 1 cut(s) 1186
BmiI GGNNCC 4 cut(s) 95, 151, 268, 1326
BmrFI CCNGG 2 cut(s) 366, 1124
BmrI ACTGGG 2 cut(s) 232, 1706
BmsI GCATC 7 cut(s) 153, 624, 799, 1072, 1375, 1414, 1673
BmuI ACTGGG 2 cut(s) 232, 1706
BpiI GAAGAC 1 cut(s) 1247
BplI GAGNNNNNCTC 2 cut(s) 467, 499
BpmI CTGGAG 1 cut(s) 1325
Bpu10I CCTNAGC 1 cut(s) 245
Bpu14I TTCGAA 2 cut(s) 559, 574
BpuEI CTTGAG 2 cut(s) 494, 1010
BpuMI CCSGG 1 cut(s) 1124
BsaHI GRCGYC 3 cut(s) 150, 231, 240
BsaI GGTCTC 2 cut(s) 542, 881
BsaJI CCNNGG 4 cut(s) 161, 378, 1122, 1544
BsaWI WCCGGW 3 cut(s) 45, 198, 276
BsaXI ACNNNNNCTCC 6 cut(s) 320, 350, 992, 1022, 1161, 1191
Bsc4I CCNNNNNNNGG 4 cut(s) 223, 276, 283, 1129
Bse118I RCCGGY 2 cut(s) 276, 283
Bse1I ACTGG 3 cut(s) 227, 655, 1712
BseAI TCCGGA 1 cut(s) 198
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 4 cut(s) 161, 378, 1122, 1544
BseGI GGATG 3 cut(s) 1087, 1118, 1141
BseLI CCNNNNNNNGG 4 cut(s) 223, 276, 283, 1129
BseMII CTCAG 5 cut(s) 259, 330, 708, 1380, 1499
BseNI ACTGG 3 cut(s) 227, 655, 1712
BseRI GAGGAG 1 cut(s) 368
BseSI GKGCMC 2 cut(s) 96, 174
BseXI GCAGC 5 cut(s) 92, 922, 1218, 1273, 1688
Bsh1236I CGCG 3 cut(s) 105, 177, 1639
Bsh1285I CGRYCG 2 cut(s) 277, 281
BshFI GGCC 1 cut(s) 1187
BshNI GGYRCC 2 cut(s) 93, 149
BshTI ACCGGT 1 cut(s) 276
BsiEI CGRYCG 2 cut(s) 277, 281
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 5 cut(s) 46, 199, 277, 284, 1124
BslFI GGGAC 3 cut(s) 1378, 1605, 1694
BslI CCNNNNNNNGG 4 cut(s) 223, 276, 283, 1129
BsmAI GTCTC 3 cut(s) 542, 881, 1038
BsmFI GGGAC 3 cut(s) 1378, 1605, 1694
BsnI GGCC 1 cut(s) 1187
Bso31I GGTCTC 2 cut(s) 542, 881
Bsp119I TTCGAA 2 cut(s) 559, 574
Bsp1286I GDGCHC 2 cut(s) 96, 174
Bsp13I TCCGGA 1 cut(s) 198
Bsp143I GATC 3 cut(s) 834, 946, 1324
BspACI CCGC 8 cut(s) 167, 175, 237, 261, 264, 295, 331, 1639
BspANI GGCC 1 cut(s) 1187
BspCNI CTCAG 5 cut(s) 258, 331, 707, 1381, 1498
BspEI TCCGGA 1 cut(s) 198
BspFNI CGCG 3 cut(s) 105, 177, 1639
BspHI TCATGA 2 cut(s) 765, 1045
BspLI GGNNCC 4 cut(s) 95, 151, 268, 1326
BspMAI CTGCAG 1 cut(s) 1263
BspMI ACCTGC 1 cut(s) 1670
BspPI GGATC 2 cut(s) 1319, 1332
BspQI GCTCTTC 1 cut(s) 1113
BspT104I TTCGAA 2 cut(s) 559, 574
BspT107I GGYRCC 2 cut(s) 93, 149
BspTI CTTAAG 1 cut(s) 1315
BspTNI GGTCTC 2 cut(s) 542, 881
BsrBI CCGCTC 1 cut(s) 331
BsrFI RCCGGY 2 cut(s) 276, 283
BsrI ACTGG 3 cut(s) 227, 655, 1712
BssAI RCCGGY 2 cut(s) 276, 283
BssECI CCNNGG 4 cut(s) 161, 378, 1122, 1544
BssMI GATC 3 cut(s) 834, 946, 1324
BssNI GRCGYC 3 cut(s) 150, 231, 240
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 2 cut(s) 161, 378
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 5 cut(s) 87, 719, 818, 1008, 1548
Bst6I CTCTTC 5 cut(s) 444, 576, 1113, 1120, 1488
BstACI GRCGYC 3 cut(s) 150, 231, 240
BstAFI CTTAAG 1 cut(s) 1315
BstBI TTCGAA 2 cut(s) 559, 574
BstC8I GCNNGC 6 cut(s) 125, 235, 271, 285, 495, 691
BstDEI CTNAG 6 cut(s) 119, 245, 339, 694, 1389, 1485
BstDSI CCRYGG 1 cut(s) 1544
BstF5I GGATG 3 cut(s) 1087, 1118, 1141
BstFNI CGCG 3 cut(s) 105, 177, 1639
BstH2I RGCGCY 3 cut(s) 153, 738, 1232
BstHHI GCGC 5 cut(s) 152, 179, 737, 1231, 1620
BstKTI GATC 3 cut(s) 837, 949, 1327
BstMAI GTCTC 3 cut(s) 542, 881, 1038
BstMBI GATC 3 cut(s) 834, 946, 1324
BstMCI CGRYCG 2 cut(s) 277, 281
BstMWI GCNNNNNNNGC 6 cut(s) 190, 246, 270, 734, 809, 1433
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 3 cut(s) 464, 1106, 1335
BstSCI CCNGG 2 cut(s) 364, 1122
BstSFI CTRYAG 2 cut(s) 1259, 1621
BstSLI GKGCMC 2 cut(s) 96, 174
BstUI CGCG 3 cut(s) 105, 177, 1639
BstV1I GCAGC 5 cut(s) 92, 922, 1218, 1273, 1688
BstV2I GAAGAC 1 cut(s) 1247
BstX2I RGATCY 2 cut(s) 834, 1324
BstXI CCANNNNNNTGG 1 cut(s) 1303
BstYI RGATCY 2 cut(s) 834, 1324
BsuRI GGCC 1 cut(s) 1187
BtgI CCRYGG 1 cut(s) 1544
BtsCI GGATG 3 cut(s) 1087, 1118, 1141
BtsI GCAGTG 2 cut(s) 644, 1092
BtsIMutI CAGTG 5 cut(s) 83, 644, 823, 1004, 1092
BveI ACCTGC 1 cut(s) 1670
Cac8I GCNNGC 6 cut(s) 125, 235, 271, 285, 495, 691
CciI TCATGA 2 cut(s) 765, 1045
CfoI GCGC 5 cut(s) 152, 179, 737, 1231, 1620
Cfr10I RCCGGY 2 cut(s) 276, 283
Cfr13I GGNCC 1 cut(s) 1186
CseI GACGC 3 cut(s) 94, 229, 239
Csp6I GTAC 5 cut(s) 58, 454, 788, 1093, 1549
CspAI ACCGGT 1 cut(s) 276
CviQI GTAC 5 cut(s) 58, 454, 788, 1093, 1549
DdeI CTNAG 6 cut(s) 119, 245, 339, 694, 1389, 1485
DinI GGCGCC 1 cut(s) 151
DpnI GATC 3 cut(s) 836, 948, 1326
DpnII GATC 3 cut(s) 834, 946, 1324
DrdI GACNNNNNNGTC 1 cut(s) 761
DriI GACNNNNNGTC 1 cut(s) 1504
DseDI GACNNNNNNGTC 1 cut(s) 761
Eam1104I CTCTTC 5 cut(s) 444, 576, 1113, 1120, 1488
Eam1105I GACNNNNNGTC 1 cut(s) 1504
EarI CTCTTC 5 cut(s) 444, 576, 1113, 1120, 1488
EciI GGCGGA 1 cut(s) 279
Eco130I CCWWGG 2 cut(s) 161, 378
Eco31I GGTCTC 2 cut(s) 542, 881
Eco47III AGCGCT 1 cut(s) 1230
Eco57I CTGAAG 3 cut(s) 540, 1496, 1630
EcoO109I RGGNCCY 1 cut(s) 1186
EcoRII CCWGG 1 cut(s) 364
EcoT14I CCWWGG 2 cut(s) 161, 378
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
ErhI CCWWGG 2 cut(s) 161, 378
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FaqI GGGAC 3 cut(s) 1378, 1605, 1694
FauNDI CATATG 1 cut(s) 1448
FbaI TGATCA 1 cut(s) 946
FblI GTMKAC 3 cut(s) 131, 228, 1634
Fnu4HI GCNGC 8 cut(s) 81, 238, 262, 936, 1232, 1262, 1640, 1677
FokI GGATG 3 cut(s) 1094, 1105, 1128
Fsp4HI GCNGC 8 cut(s) 81, 238, 262, 936, 1232, 1262, 1640, 1677
FspBI CTAG 5 cut(s) 162, 666, 683, 1190, 1251
GlaI GCGC 5 cut(s) 151, 178, 736, 1230, 1619
GluI GCNGC 8 cut(s) 81, 238, 262, 936, 1232, 1262, 1640, 1677
GsuI CTGGAG 1 cut(s) 1325
HaeII RGCGCY 3 cut(s) 153, 738, 1232
HaeIII GGCC 1 cut(s) 1187
HapII CCGG 5 cut(s) 46, 199, 277, 284, 1124
HgaI GACGC 3 cut(s) 94, 229, 239
HhaI GCGC 5 cut(s) 152, 179, 737, 1231, 1620
Hin1I GRCGYC 3 cut(s) 150, 231, 240
Hin6I GCGC 5 cut(s) 150, 177, 735, 1229, 1618
HinP1I GCGC 5 cut(s) 150, 177, 735, 1229, 1618
HincII GTYRAC 2 cut(s) 132, 229
HindII GTYRAC 2 cut(s) 132, 229
HindIII AAGCTT 4 cut(s) 191, 408, 1352, 1478
HpaII CCGG 5 cut(s) 46, 199, 277, 284, 1124
HphI GGTGA 2 cut(s) 206, 1682
Hpy166II GTNNAC 7 cut(s) 60, 132, 172, 229, 907, 1535, 1635
Hpy8I GTNNAC 7 cut(s) 60, 132, 172, 229, 907, 1535, 1635
Hpy99I CGWCG 6 cut(s) 68, 71, 77, 110, 133, 233
HpyAV CCTTC 2 cut(s) 430, 1315
HpyCH4III ACNGT 5 cut(s) 87, 719, 818, 1008, 1548
HpyF10VI GCNNNNNNNGC 6 cut(s) 190, 246, 270, 734, 809, 1433
HpyF3I CTNAG 6 cut(s) 119, 245, 339, 694, 1389, 1485
Hsp92I GRCGYC 3 cut(s) 150, 231, 240
HspAI GCGC 5 cut(s) 150, 177, 735, 1229, 1618
KasI GGCGCC 1 cut(s) 149
Kpn2I TCCGGA 1 cut(s) 198
KroI GCCGGC 1 cut(s) 283
KroNI GCCGGC 1 cut(s) 285
Ksp22I TGATCA 1 cut(s) 946
Kzo9I GATC 3 cut(s) 834, 946, 1324
LguI GCTCTTC 1 cut(s) 1113
LmnI GCTCC 5 cut(s) 266, 328, 355, 627, 976
Lsp1109I GCAGC 5 cut(s) 92, 922, 1218, 1273, 1688
LweI GCATC 7 cut(s) 153, 624, 799, 1072, 1375, 1414, 1673
MaeI CTAG 5 cut(s) 162, 666, 683, 1190, 1251
MaeIII GTNAC 3 cut(s) 719, 1002, 1008
MalI GATC 3 cut(s) 836, 948, 1326
MbiI CCGCTC 1 cut(s) 331
MboI GATC 3 cut(s) 834, 946, 1324
MflI RGATCY 2 cut(s) 834, 1324
MhlI GDGCHC 2 cut(s) 96, 174
MluI ACGCGT 1 cut(s) 103
Mly113I GGCGCC 1 cut(s) 150
MlyI GAGTC 5 cut(s) 127, 902, 1010, 1040, 1400
MmeI TCCRAC 2 cut(s) 568, 978
MreI CGCCGGCG 1 cut(s) 283
MroI TCCGGA 1 cut(s) 198
MroNI GCCGGC 1 cut(s) 283
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 6 cut(s) 393, 714, 1065, 1179, 1244, 1316
MslI CAYNNNNRTG 2 cut(s) 1371, 1422
MspA1I CMGCKG 2 cut(s) 237, 1156
MspCI CTTAAG 1 cut(s) 1315
MspI CCGG 5 cut(s) 46, 199, 277, 284, 1124
MspR9I CCNGG 2 cut(s) 366, 1124
MvaI CCWGG 1 cut(s) 366
MvnI CGCG 3 cut(s) 105, 177, 1639
MwoI GCNNNNNNNGC 6 cut(s) 190, 246, 270, 734, 809, 1433
NaeI GCCGGC 1 cut(s) 285
NarI GGCGCC 1 cut(s) 150
NciI CCSGG 1 cut(s) 1124
NdeI CATATG 1 cut(s) 1448
NdeII GATC 3 cut(s) 834, 946, 1324
NgoMIV GCCGGC 1 cut(s) 283
NlaIV GGNNCC 4 cut(s) 95, 151, 268, 1326
NmeAIII GCCGAG 2 cut(s) 120, 237
NmuCI GTSAC 1 cut(s) 1002
NspI RCATGY 3 cut(s) 464, 1106, 1335
NspV TTCGAA 2 cut(s) 559, 574
PagI TCATGA 2 cut(s) 765, 1045
PciI ACATGT 1 cut(s) 1331
PciSI GCTCTTC 1 cut(s) 1113
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 237
PdiI GCCGGC 1 cut(s) 285
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 8 cut(s) 8, 211, 480, 505, 671, 749, 1271, 1340
PinAI ACCGGT 1 cut(s) 276
PkrI GCNGC 8 cut(s) 82, 239, 263, 937, 1233, 1263, 1641, 1678
PleI GAGTC 5 cut(s) 127, 902, 1009, 1039, 1399
PluTI GGCGCC 1 cut(s) 153
PpsI GAGTC 5 cut(s) 127, 902, 1009, 1039, 1399
PscI ACATGT 1 cut(s) 1331
PsiI TTATAA 1 cut(s) 1586
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 4 cut(s) 95, 151, 268, 1326
PspPI GGNCC 1 cut(s) 1186
PstI CTGCAG 1 cut(s) 1263
PsuI RGATCY 2 cut(s) 834, 1324
PvuII CAGCTG 1 cut(s) 1156
RsaI GTAC 5 cut(s) 59, 455, 789, 1094, 1550
RsaNI GTAC 5 cut(s) 58, 454, 788, 1093, 1549
RseI CAYNNNNRTG 2 cut(s) 1371, 1422
SalI GTCGAC 2 cut(s) 130, 227
SapI GCTCTTC 1 cut(s) 1113
SaqAI TTAA 6 cut(s) 393, 714, 1065, 1179, 1244, 1316
SatI GCNGC 8 cut(s) 81, 238, 262, 936, 1232, 1262, 1640, 1677
Sau3AI GATC 3 cut(s) 834, 946, 1324
Sau96I GGNCC 1 cut(s) 1186
ScaI AGTACT 1 cut(s) 1094
SchI GAGTC 5 cut(s) 127, 902, 1010, 1040, 1400
ScrFI CCNGG 2 cut(s) 366, 1124
SduI GDGCHC 2 cut(s) 96, 174
SfaNI GCATC 7 cut(s) 153, 624, 799, 1072, 1375, 1414, 1673
SfcI CTRYAG 2 cut(s) 1259, 1621
SfoI GGCGCC 1 cut(s) 151
SfuI TTCGAA 2 cut(s) 559, 574
SgrAI CRCCGGYG 1 cut(s) 283
SmiMI CAYNNNNRTG 2 cut(s) 1371, 1422
SmlI CTYRAG 3 cut(s) 473, 989, 1315
SmoI CTYRAG 3 cut(s) 473, 989, 1315
SpeI ACTAGT 1 cut(s) 682
SsiI CCGC 8 cut(s) 167, 175, 237, 261, 264, 295, 331, 1639
SspDI GGCGCC 1 cut(s) 149
SspI AATATT 3 cut(s) 1060, 1205, 1581
SspMI CTAG 5 cut(s) 162, 666, 683, 1190, 1251
StyD4I CCNGG 2 cut(s) 364, 1122
StyI CCWWGG 2 cut(s) 161, 378
TaaI ACNGT 5 cut(s) 87, 719, 818, 1008, 1548
TaqI TCGA 7 cut(s) 131, 186, 228, 559, 574, 1038, 1240
TaqII GACCGA 1 cut(s) 524
TatI WGTACW 3 cut(s) 57, 453, 1092
TauI GCSGC 3 cut(s) 240, 264, 1642
TfiI GAWTC 8 cut(s) 8, 211, 480, 505, 671, 749, 1271, 1340
Tru1I TTAA 6 cut(s) 393, 714, 1065, 1179, 1244, 1316
Tru9I TTAA 6 cut(s) 393, 714, 1065, 1179, 1244, 1316
TscAI CASTG 5 cut(s) 90, 644, 823, 1011, 1092
TseFI GTSAC 1 cut(s) 1002
TseI GCWGC 5 cut(s) 80, 935, 1231, 1261, 1676
Tsp45I GTSAC 1 cut(s) 1002
TspRI CASTG 5 cut(s) 90, 644, 823, 1011, 1092
Vha464I CTTAAG 1 cut(s) 1315
VneI GTGCAC 1 cut(s) 170
XapI RAATTY 5 cut(s) 24, 867, 881, 895, 919
XceI RCATGY 3 cut(s) 464, 1106, 1335
XmaJI CCTAGG 1 cut(s) 161
XmiI GTMKAC 3 cut(s) 131, 228, 1634
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 5 cut(s) 162, 666, 683, 1190, 1251
ZrmI AGTACT 1 cut(s) 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.