Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011639.1

Orthogroup ID

OG0002593

Physical Location & Seq

Genomic Coordinates Forward (+)

363 .. 680

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011639.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atggctgaatctcccataccagaaattccgattattcccgaaagccggaaaagaaagtacaccgacgaggcagcactgtcggggcacctaaaacgcatcgttttatcactaagcaagccgtcgactctgctcggcatcggcgccacaaaacctaggtcggtgcaccgcgccaagctcgaaaagcttctccggaagctcgtgattcaccacaactgggtcgacgccagcggcgtcctcagcgtgttgctcggcggcggagccagcgacaggtcgccggcgaacaaccgcttcatgtattgggtaatgagtttagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAF1_subA

Protein Analysis

105

Amino Acids

11.58

Weight (kDa)

10.33

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53200 AT1G53200
fragaria_vesca	FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060
malus_domestica	MD03G1237200.v1.1 MD10G1064700.v1.1
prunus_persica	Prupe.4G172200_v2.0.a1
pyrus_communis	pycom03g18310
rosa_chinensis	RchiOBHm_Chr5g0031851 RchiOBHm_Chr6g0312691
rosa_laevigata	RLG00000013275 RLG00000033353
rosa_multiflora	Rmu_sc0002188.1_g000001 Rmu_sc0007517.1_g000001 Rmu_sc0011639.1_g000001 Rmu_sc0012252.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048420
rosa_rugosa	Rorug04G0355200 Rorug05G0128100 Rorug05G0128200 Rorug06G0398300 Rorug06G0398300 Rorug06G0398400 Rorug06G0398500
rosa_samantha	Rh5AG222300 Rh5BG222600 Rh5CG245700 Rh5DG227400 Rh6AG515800 Rh6BG527100 Rh6CG532000 Rh6DG518000
rosa_wichuraiana	Rw5G020260 Rw6G044820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	84, 140
AccI	GTMKAC	2 cut(s)	122, 219
AccII	CGCG	1 cut(s)	168
AccIII	TCCGGA	1 cut(s)	189
AciI	CCGC	5 cut(s)	166, 228, 252, 255, 286
AcsI	RAATTY	1 cut(s)	24
AcyI	GRCGYC	3 cut(s)	141, 222, 231
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	3 cut(s)	45, 214, 267
AluBI	AGCT	3 cut(s)	175, 184, 196
AluI	AGCT	3 cut(s)	175, 184, 196
Alw21I	GWGCWC	1 cut(s)	165
Alw44I	GTGCAC	1 cut(s)	161
Aor13HI	TCCGGA	1 cut(s)	189
ApaLI	GTGCAC	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	24
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
Asp700I	GAANNNNTTC	1 cut(s)	183
AspA2I	CCTAGG	1 cut(s)	152
AspLEI	GCGC	2 cut(s)	143, 170
AsuHPI	GGTGA	1 cut(s)	197
AvrII	CCTAGG	1 cut(s)	152
BaeGI	GKGCMC	2 cut(s)	87, 165
BanI	GGYRCC	2 cut(s)	84, 140
BauI	CACGAG	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	165
BbvCI	CCTCAGC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BfaI	CTAG	1 cut(s)	153
BfoI	RGCGCY	1 cut(s)	144
BisI	GCNGC	3 cut(s)	72, 229, 253
BlnI	CCTAGG	1 cut(s)	152
BlsI	GCNGC	3 cut(s)	73, 230, 254
BmiI	GGNNCC	3 cut(s)	86, 142, 259
BmrI	ACTGGG	1 cut(s)	223
BmsI	GCATC	2 cut(s)	105, 144
BmuI	ACTGGG	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	236
BsaHI	GRCGYC	3 cut(s)	141, 222, 231
BsaJI	CCNNGG	1 cut(s)	152
BsaWI	WCCGGW	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 214, 267
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	218
BseAI	TCCGGA	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	152
BseLI	CCNNNNNNNGG	3 cut(s)	45, 214, 267
BseMII	CTCAG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	218
BseSI	GKGCMC	2 cut(s)	87, 165
BseXI	GCAGC	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	168
BshNI	GGYRCC	2 cut(s)	84, 140
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	3 cut(s)	46, 190, 275
BslI	CCNNNNNNNGG	3 cut(s)	45, 214, 267
Bsp1286I	GDGCHC	2 cut(s)	87, 165
Bsp13I	TCCGGA	1 cut(s)	189
BspACI	CCGC	5 cut(s)	166, 228, 252, 255, 286
BspCNI	CTCAG	1 cut(s)	249
BspEI	TCCGGA	1 cut(s)	189
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	3 cut(s)	86, 142, 259
BspT107I	GGYRCC	2 cut(s)	84, 140
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	152
BssNI	GRCGYC	3 cut(s)	141, 222, 231
BssSI	CACGAG	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	78
BstACI	GRCGYC	3 cut(s)	141, 222, 231
BstC8I	GCNNGC	4 cut(s)	116, 226, 262, 276
BstDEI	CTNAG	2 cut(s)	110, 236
BstFNI	CGCG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	2 cut(s)	143, 170
BstMWI	GCNNNNNNNGC	3 cut(s)	181, 237, 261
BstSLI	GKGCMC	2 cut(s)	87, 165
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	4 cut(s)	116, 226, 262, 276
CfoI	GCGC	2 cut(s)	143, 170
Cfr10I	RCCGGY	1 cut(s)	274
CseI	GACGC	2 cut(s)	220, 230
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	7 cut(s)	5, 45, 118, 175, 184, 196, 260
CviKI_1	RGCY	7 cut(s)	5, 45, 118, 175, 184, 196, 260
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	2 cut(s)	110, 236
DinI	GGCGCC	1 cut(s)	142
EciI	GGCGGA	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	152
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	1 cut(s)	295
FaiI	YATR	2 cut(s)	17, 293
FatI	CATG	1 cut(s)	291
FblI	GTMKAC	2 cut(s)	122, 219
Fnu4HI	GCNGC	3 cut(s)	72, 229, 253
Fsp4HI	GCNGC	3 cut(s)	72, 229, 253
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	2 cut(s)	142, 169
GluI	GCNGC	3 cut(s)	72, 229, 253
HaeII	RGCGCY	1 cut(s)	144
HapII	CCGG	3 cut(s)	46, 190, 275
HgaI	GACGC	2 cut(s)	220, 230
HhaI	GCGC	2 cut(s)	143, 170
Hin1I	GRCGYC	3 cut(s)	141, 222, 231
Hin1II	CATG	1 cut(s)	295
Hin6I	GCGC	2 cut(s)	141, 168
HinP1I	GCGC	2 cut(s)	141, 168
HincII	GTYRAC	2 cut(s)	123, 220
HindII	GTYRAC	2 cut(s)	123, 220
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	3 cut(s)	8, 124, 202
HpaII	CCGG	3 cut(s)	46, 190, 275
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	4 cut(s)	60, 123, 163, 220
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	3 cut(s)	38, 190, 199
Hpy8I	GTNNAC	4 cut(s)	60, 123, 163, 220
Hpy99I	CGWCG	3 cut(s)	68, 124, 224
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	3 cut(s)	181, 237, 261
HpyF3I	CTNAG	2 cut(s)	110, 236
Hsp92I	GRCGYC	3 cut(s)	141, 222, 231
Hsp92II	CATG	1 cut(s)	295
HspAI	GCGC	2 cut(s)	141, 168
KasI	GGCGCC	1 cut(s)	140
Kpn2I	TCCGGA	1 cut(s)	189
KroI	GCCGGC	1 cut(s)	274
KroNI	GCCGGC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	8 cut(s)	33, 59, 199, 203, 238, 253, 274, 288
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	2 cut(s)	105, 144
MaeI	CTAG	1 cut(s)	153
MhlI	GDGCHC	2 cut(s)	87, 165
MluCI	AATT	1 cut(s)	24
Mly113I	GGCGCC	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	2 cut(s)	61, 245
MreI	CGCCGGCG	1 cut(s)	274
MroI	TCCGGA	1 cut(s)	189
MroNI	GCCGGC	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	3 cut(s)	46, 190, 275
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	181, 237, 261
NaeI	GCCGGC	1 cut(s)	276
NarI	GGCGCC	1 cut(s)	141
NgoMIV	GCCGGC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	3 cut(s)	86, 142, 259
NmeAIII	GCCGAG	2 cut(s)	111, 228
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PdiI	GCCGGC	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	8, 202
PkrI	GCNGC	3 cut(s)	73, 230, 254
PleI	GAGTC	1 cut(s)	118
PluTI	GGCGCC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	118
PspN4I	GGNNCC	3 cut(s)	86, 142, 259
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SalI	GTCGAC	2 cut(s)	121, 218
SatI	GCNGC	3 cut(s)	72, 229, 253
SchI	GAGTC	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	87, 165
SetI	ASST	7 cut(s)	90, 154, 158, 177, 186, 198, 272
SfaNI	GCATC	2 cut(s)	105, 144
SfoI	GGCGCC	1 cut(s)	142
SgrAI	CRCCGGYG	1 cut(s)	274
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	5 cut(s)	166, 228, 252, 255, 286
SspDI	GGCGCC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	78
TaqI	TCGA	3 cut(s)	122, 177, 219
TasI	AATT	1 cut(s)	24
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	2 cut(s)	231, 255
TfiI	GAWTC	2 cut(s)	8, 202
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	1 cut(s)	280
TspRI	CASTG	1 cut(s)	81
VneI	GTGCAC	1 cut(s)	161
XapI	RAATTY	1 cut(s)	24
XmaJI	CCTAGG	1 cut(s)	152
XmiI	GTMKAC	2 cut(s)	122, 219
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.