Rroxscaffold_1G00048420

TAF RNA Polymerase I subunit A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002593
Physical Location & Seq
Reverse (-)
68380161 .. 68386871
6711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00048420.1

Sequence Viewer

Length: 1881 bp
ATGGCTGAATCTCCTATTCCAGAATCGGACCACAACATTTCGATTATTCCCGAAAGCCGGAAAAGAAAGTACACCGACGACGGCGACGAGGCAGCACCGTCGGGGCACCTAAAACGCATCGTTTTATCACTAAGCAAGCCGTCGACTCTGCTCGGCATCGGCTCCACAAAACCTAGGGCGGTGCACCGCGCCAAGCTCGAAAAGCTTCTCCGGAATCTCGTGATTCACCACAACTGGGTCGACGCCAGCGGCGTCCTCAGCGTGTTGCTCGGCGGAGGAGCCAGCGACAGGTCGCCGGCGAACAACCGCTTCATGTATTGGGTTTTGCTGGAAATGGTGGAGCGGTTGTCTGAGATGGAAAAGGAGGAGCGTTTGCCTGGGAATTACTCCAAGGAGGTGTCGATTAAGAATGTGTTTGAAGCTTGGGAGAAGAAGAATGATAAGATGAAGGCAAAGTTAGAAGAGTACAGACATGCTGTTGAACTTGAGCGCATCTCGCTCTCGCTTGCACAAGGGAATCTTAAGGAGGCCGAAGCAGGAGCTTTCAATCTCATGCAATTAAATGGTTTTCGAAATGACCCTCTTCGAAATATGATTGTCGGATTGACATTCCAGCAATTGTGGTATTCCAAGTTACCAAAAGAGATGCAATGGAGGGAGGCTGACCAGTTTTACACTAGGGAATCAAATGAACTAGTTGCAGGCTCAGAGGGGCATGGCTCTATTAACAGTAACGAGGCTGGTAGTGCCATTCATTGTGATTCAGACACCTCTATCATGGATGATAAAGTAGAGAATGTACCACCTATTGTTGCTGTTGATGCTGATAGTGGCTTACATAGAGATATCTCTGTGGAGGTTGATGACATGGAAGTAGAAATTTCTCCACCGAAATTTGAGACCCAAAATTTCTATGCGGACTCTGCTGAAAATTCAGAAGATGAAACTGCTTTATCTGATCATGGTGGTCAAATGCAGTATGCTCTCATTTTCTCTGAACTTGAGGGGTTGGAGTCACTGTTACTGCCCATACGATTGCCAGAGTCTCTTGATAATCATGAAGATAAGAATATTTTTAATGACTATTACAAGGATGCAATGAAGTACTTACGACATGCTCTTCACTCTTCACCCCCGGTATTGGTAGCCTTGCATCCTTTGATACAGCTGTTGTTGATTGGAGGTCAAGTTAAAGAGGCCCTAGATGAGATTGAACATTGTTGTAATTTTTCAAATGCAGCGCTGCCTACTCGATTAAGGGCTAGTCTTCTGCAGCAATTTGATTCTAATAACAAGCCTGTGCTTTCCACTTGTCTGGAGGAAAACTTAAGGAAGGATCCTACATGTTGCGATTCATTGGAAAAGCTTCTTCTGTTGCATCAAAATGATAATTATAGTCCTGAGTCGCTGCTTGAAATGATAGCTTTGCATTTAGATGCCACCAATGCTGAATACAACATATGGAGAGAGTATGCTATGTGTTTCCTGAAGCTTTCTCAGTATGAAGAGGACAGGATGTCGGTATGTCTGAATGGAAATGAAGGTGGACATAAACCACAGTACTCTGTTTCTTTCAATAAGACCCCAAAAATATTTATAAAGGGACAATCTGGAAAGAATTGGAGATTGCGCTGTAGATGGTGGTCTACGCGGCACTTCAGCCATGATATACTTGCATCAGAGATTGCAGCAGGTGATTTGGTGCTCTTAACTTACAAAGCAGCTAGTGCAGTGCATATGTATGGATCAGAGTTCTACTACGTTGTGGATGCTCATTGCTGCTTAGAGAAAGAAAATGAGAGGGACTTGCTCTGTTTTTTGCAAATGCACATTCGAAATTCTGTTCGAATTTATTCAAATTCTCGACAGAGAACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAF1_subA

Protein Analysis

626

Amino Acids

71.15

Weight (kDa)

5.42

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF1_subA PF14929 73 - 590 9e-74 TAF RNA Polymerase I subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1598
AarI CACCTGC 1 cut(s) 1682
Acc36I ACCTGC 1 cut(s) 1682
AccB1I GGYRCC 1 cut(s) 105
AccBSI CCGCTC 1 cut(s) 343
AccI GTMKAC 3 cut(s) 143, 240, 1646
AccII CGCG 2 cut(s) 189, 1651
AccIII TCCGGA 1 cut(s) 210
AciI CCGC 8 cut(s) 179, 187, 249, 273, 307, 343, 917, 1651
AclWI GGATC 3 cut(s) 1331, 1344, 1753
AcsI RAATTY 7 cut(s) 879, 893, 907, 931, 1837, 1848, 1858
AcuI CTGAAG 2 cut(s) 1508, 1642
AcyI GRCGYC 2 cut(s) 243, 252
AfaI GTAC 5 cut(s) 71, 467, 801, 1106, 1562
AfeI AGCGCT 1 cut(s) 1242
AfiI CCNNNNNNNGG 4 cut(s) 57, 235, 288, 1141
AflII CTTAAG 2 cut(s) 521, 1327
AflIII ACRYGT 1 cut(s) 1343
AgsI TTSAA 8 cut(s) 419, 482, 547, 1214, 1233, 1415, 1576, 1857
AhdI GACNNNNNGTC 1 cut(s) 1516
AhlI ACTAGT 1 cut(s) 694
AjnI CCWGG 1 cut(s) 376
AluBI AGCT 9 cut(s) 196, 205, 422, 542, 1168, 1366, 1424, 1492, 1724
AluI AGCT 9 cut(s) 196, 205, 422, 542, 1168, 1366, 1424, 1492, 1724
Alw21I GWGCWC 2 cut(s) 186, 1707
Alw26I GTCTC 2 cut(s) 893, 1050
Alw44I GTGCAC 1 cut(s) 182
AlwI GGATC 3 cut(s) 1331, 1344, 1753
Aor13HI TCCGGA 1 cut(s) 210
Aor51HI AGCGCT 1 cut(s) 1242
AoxI GGCC 2 cut(s) 528, 1197
ApaLI GTGCAC 1 cut(s) 182
ApeKI GCWGC 8 cut(s) 92, 1238, 1243, 1273, 1408, 1688, 1721, 1779
ApoI RAATTY 7 cut(s) 879, 893, 907, 931, 1837, 1848, 1858
Asp700I GAANNNNTTC 3 cut(s) 204, 1365, 1852
AspA2I CCTAGG 1 cut(s) 173
AspLEI GCGC 4 cut(s) 191, 492, 1243, 1632
AspS9I GGNCC 2 cut(s) 28, 1198
AsuC2I CCSGG 1 cut(s) 1136
AsuHPI GGTGA 3 cut(s) 218, 1122, 1706
AsuII TTCGAA 4 cut(s) 571, 586, 1834, 1846
AvaII GGWCC 1 cut(s) 28
AvrII CCTAGG 1 cut(s) 173
BaeGI GKGCMC 2 cut(s) 108, 186
BaeI ACNNNNGTAYC 2 cut(s) 1154, 1187
BamHI GGATCC 1 cut(s) 1336
BanI GGYRCC 1 cut(s) 105
BauI CACGAG 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 1259
Bbv12I GWGCWC 2 cut(s) 186, 1707
BbvCI CCTCAGC 1 cut(s) 257
BbvI GCAGC 8 cut(s) 104, 1230, 1250, 1285, 1395, 1700, 1733, 1766
BccI CCATC 2 cut(s) 349, 1632
BceAI ACGGC 2 cut(s) 97, 124
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BciT130I CCWGG 1 cut(s) 378
BclI TGATCA 1 cut(s) 958
BcnI CCSGG 1 cut(s) 1136
BcoDI GTCTC 2 cut(s) 893, 1050
BcuI ACTAGT 1 cut(s) 694
BfaI CTAG 6 cut(s) 174, 678, 695, 1202, 1263, 1725
BfmI CTRYAG 2 cut(s) 1271, 1633
BfoI RGCGCY 1 cut(s) 1244
BfrI CTTAAG 2 cut(s) 521, 1327
BfuAI ACCTGC 1 cut(s) 1682
BlnI CCTAGG 1 cut(s) 173
BmcAI AGTACT 2 cut(s) 1106, 1562
Bme1390I CCNGG 2 cut(s) 378, 1136
Bme18I GGWCC 1 cut(s) 28
BmeRI GACNNNNNGTC 1 cut(s) 1516
BmgT120I GGNCC 2 cut(s) 28, 1198
BmiI GGNNCC 4 cut(s) 107, 163, 280, 1338
BmrFI CCNGG 2 cut(s) 378, 1136
BmrI ACTGGG 1 cut(s) 244
BmuI ACTGGG 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 1259
BplI GAGNNNNNCTC 2 cut(s) 479, 511
BpmI CTGGAG 1 cut(s) 1337
Bpu10I CCTNAGC 1 cut(s) 257
Bpu14I TTCGAA 4 cut(s) 571, 586, 1834, 1846
BpuEI CTTGAG 2 cut(s) 506, 1022
BpuMI CCSGG 1 cut(s) 1136
BsaHI GRCGYC 2 cut(s) 243, 252
BsaI GGTCTC 1 cut(s) 893
BsaJI CCNNGG 4 cut(s) 173, 377, 390, 1134
BsaWI WCCGGW 1 cut(s) 210
BsaXI ACNNNNNCTCC 6 cut(s) 332, 362, 1004, 1034, 1173, 1203
Bsc4I CCNNNNNNNGG 4 cut(s) 57, 235, 288, 1141
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 2 cut(s) 239, 667
Bse3DI GCAATG 3 cut(s) 656, 1104, 1774
BseAI TCCGGA 1 cut(s) 210
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 4 cut(s) 173, 377, 390, 1134
BseGI GGATG 5 cut(s) 787, 1099, 1153, 1521, 1774
BseLI CCNNNNNNNGG 4 cut(s) 57, 235, 288, 1141
BseMI GCAATG 3 cut(s) 656, 1104, 1774
BseMII CTCAG 5 cut(s) 271, 342, 720, 1392, 1511
BseNI ACTGG 2 cut(s) 239, 667
BseRI GAGGAG 2 cut(s) 291, 380
BseSI GKGCMC 2 cut(s) 108, 186
BseXI GCAGC 8 cut(s) 104, 1230, 1250, 1285, 1395, 1700, 1733, 1766
BsgI GTGCAG 1 cut(s) 1749
Bsh1236I CGCG 2 cut(s) 189, 1651
BshFI GGCC 2 cut(s) 530, 1199
BshNI GGYRCC 1 cut(s) 105
BsiHKAI GWGCWC 2 cut(s) 186, 1707
BsiSI CCGG 4 cut(s) 58, 211, 296, 1136
BslFI GGGAC 2 cut(s) 1617, 1817
BslI CCNNNNNNNGG 4 cut(s) 57, 235, 288, 1141
BsmAI GTCTC 2 cut(s) 893, 1050
BsmFI GGGAC 2 cut(s) 1617, 1817
BsnI GGCC 2 cut(s) 530, 1199
Bso31I GGTCTC 1 cut(s) 893
Bsp119I TTCGAA 4 cut(s) 571, 586, 1834, 1846
Bsp1286I GDGCHC 3 cut(s) 108, 186, 1707
Bsp13I TCCGGA 1 cut(s) 210
Bsp143I GATC 3 cut(s) 958, 1336, 1745
BspACI CCGC 8 cut(s) 179, 187, 249, 273, 307, 343, 917, 1651
BspANI GGCC 2 cut(s) 530, 1199
BspCNI CTCAG 5 cut(s) 270, 343, 719, 1393, 1510
BspEI TCCGGA 1 cut(s) 210
BspFNI CGCG 2 cut(s) 189, 1651
BspHI TCATGA 1 cut(s) 1057
BspLI GGNNCC 4 cut(s) 107, 163, 280, 1338
BspMAI CTGCAG 1 cut(s) 1275
BspMI ACCTGC 1 cut(s) 1682
BspPI GGATC 3 cut(s) 1331, 1344, 1753
BspQI GCTCTTC 1 cut(s) 1125
BspT104I TTCGAA 4 cut(s) 571, 586, 1834, 1846
BspT107I GGYRCC 1 cut(s) 105
BspTI CTTAAG 2 cut(s) 521, 1327
BspTNI GGTCTC 1 cut(s) 893
BsrBI CCGCTC 1 cut(s) 343
BsrDI GCAATG 3 cut(s) 656, 1104, 1774
BsrFI RCCGGY 1 cut(s) 295
BsrI ACTGG 2 cut(s) 239, 667
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 4 cut(s) 173, 377, 390, 1134
BssMI GATC 3 cut(s) 958, 1336, 1745
BssNI GRCGYC 2 cut(s) 243, 252
BssSI CACGAG 1 cut(s) 218
BssT1I CCWWGG 2 cut(s) 173, 390
Bst2BI CACGAG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 4 cut(s) 99, 731, 1020, 1560
Bst6I CTCTTC 5 cut(s) 456, 588, 1125, 1132, 1500
BstACI GRCGYC 2 cut(s) 243, 252
BstAFI CTTAAG 2 cut(s) 521, 1327
BstAPI GCANNNNNTGC 1 cut(s) 1727
BstBI TTCGAA 4 cut(s) 571, 586, 1834, 1846
BstC8I GCNNGC 6 cut(s) 137, 247, 283, 297, 507, 703
BstDEI CTNAG 7 cut(s) 131, 257, 351, 706, 1401, 1497, 1783
BstF5I GGATG 5 cut(s) 787, 1099, 1153, 1521, 1774
BstFNI CGCG 2 cut(s) 189, 1651
BstH2I RGCGCY 1 cut(s) 1244
BstHHI GCGC 4 cut(s) 191, 492, 1243, 1632
BstKTI GATC 3 cut(s) 961, 1339, 1748
BstMAI GTCTC 2 cut(s) 893, 1050
BstMBI GATC 3 cut(s) 958, 1336, 1745
BstMWI GCNNNNNNNGC 8 cut(s) 202, 258, 496, 746, 821, 923, 1445, 1727
BstNI CCWGG 1 cut(s) 378
BstNSI RCATGY 3 cut(s) 476, 1118, 1347
BstSCI CCNGG 2 cut(s) 376, 1134
BstSFI CTRYAG 2 cut(s) 1271, 1633
BstSLI GKGCMC 2 cut(s) 108, 186
BstUI CGCG 2 cut(s) 189, 1651
BstV1I GCAGC 8 cut(s) 104, 1230, 1250, 1285, 1395, 1700, 1733, 1766
BstV2I GAAGAC 1 cut(s) 1259
BstX2I RGATCY 1 cut(s) 1336
BstXI CCANNNNNNTGG 1 cut(s) 1315
BstYI RGATCY 1 cut(s) 1336
BsuRI GGCC 2 cut(s) 530, 1199
BtsCI GGATG 5 cut(s) 787, 1099, 1153, 1521, 1774
BtsI GCAGTG 1 cut(s) 1737
BtsIMutI CAGTG 2 cut(s) 1016, 1737
BveI ACCTGC 1 cut(s) 1682
Cac8I GCNNGC 6 cut(s) 137, 247, 283, 297, 507, 703
CciI TCATGA 1 cut(s) 1057
CfoI GCGC 4 cut(s) 191, 492, 1243, 1632
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 2 cut(s) 28, 1198
CseI GACGC 2 cut(s) 241, 251
Csp6I GTAC 5 cut(s) 70, 466, 800, 1105, 1561
CviQI GTAC 5 cut(s) 70, 466, 800, 1105, 1561
DdeI CTNAG 7 cut(s) 131, 257, 351, 706, 1401, 1497, 1783
DpnI GATC 3 cut(s) 960, 1338, 1747
DpnII GATC 3 cut(s) 958, 1336, 1745
DriI GACNNNNNGTC 1 cut(s) 1516
Eam1104I CTCTTC 5 cut(s) 456, 588, 1125, 1132, 1500
Eam1105I GACNNNNNGTC 1 cut(s) 1516
EarI CTCTTC 5 cut(s) 456, 588, 1125, 1132, 1500
EciI GGCGGA 1 cut(s) 288
Eco130I CCWWGG 2 cut(s) 173, 390
Eco31I GGTCTC 1 cut(s) 893
Eco32I GATATC 1 cut(s) 847
Eco47I GGWCC 1 cut(s) 28
Eco47III AGCGCT 1 cut(s) 1242
Eco57I CTGAAG 2 cut(s) 1508, 1642
EcoO109I RGGNCCY 1 cut(s) 1198
EcoRII CCWGG 1 cut(s) 376
EcoRV GATATC 1 cut(s) 847
EcoT14I CCWWGG 2 cut(s) 173, 390
ErhI CCWWGG 2 cut(s) 173, 390
FalI AAGNNNNNCTT 2 cut(s) 504, 536
FaqI GGGAC 2 cut(s) 1617, 1817
FauNDI CATATG 2 cut(s) 1460, 1737
FbaI TGATCA 1 cut(s) 958
FblI GTMKAC 3 cut(s) 143, 240, 1646
FokI GGATG 5 cut(s) 794, 1106, 1140, 1528, 1781
FspBI CTAG 6 cut(s) 174, 678, 695, 1202, 1263, 1725
GlaI GCGC 4 cut(s) 190, 491, 1242, 1631
GsuI CTGGAG 1 cut(s) 1337
HaeII RGCGCY 1 cut(s) 1244
HaeIII GGCC 2 cut(s) 530, 1199
HapII CCGG 4 cut(s) 58, 211, 296, 1136
HgaI GACGC 2 cut(s) 241, 251
HhaI GCGC 4 cut(s) 191, 492, 1243, 1632
Hin1I GRCGYC 2 cut(s) 243, 252
Hin6I GCGC 4 cut(s) 189, 490, 1241, 1630
HinP1I GCGC 4 cut(s) 189, 490, 1241, 1630
HincII GTYRAC 2 cut(s) 144, 241
HindII GTYRAC 2 cut(s) 144, 241
HindIII AAGCTT 4 cut(s) 203, 420, 1364, 1490
HpaII CCGG 4 cut(s) 58, 211, 296, 1136
HphI GGTGA 3 cut(s) 218, 1122, 1706
Hpy166II GTNNAC 6 cut(s) 72, 144, 184, 241, 1547, 1647
Hpy8I GTNNAC 6 cut(s) 72, 144, 184, 241, 1547, 1647
Hpy99I CGWCG 6 cut(s) 80, 83, 89, 103, 145, 245
HpyAV CCTTC 3 cut(s) 442, 1327, 1535
HpyCH4III ACNGT 4 cut(s) 99, 731, 1020, 1560
HpyCH4IV ACGT 1 cut(s) 1761
HpyF10VI GCNNNNNNNGC 8 cut(s) 202, 258, 496, 746, 821, 923, 1445, 1727
HpyF3I CTNAG 7 cut(s) 131, 257, 351, 706, 1401, 1497, 1783
HpySE526I ACGT 1 cut(s) 1761
Hsp92I GRCGYC 2 cut(s) 243, 252
HspAI GCGC 4 cut(s) 189, 490, 1241, 1630
Kpn2I TCCGGA 1 cut(s) 210
KroI GCCGGC 1 cut(s) 295
KroNI GCCGGC 1 cut(s) 297
Ksp22I TGATCA 1 cut(s) 958
Kzo9I GATC 3 cut(s) 958, 1336, 1745
LguI GCTCTTC 1 cut(s) 1125
LmnI GCTCC 5 cut(s) 167, 278, 340, 367, 539
Lsp1109I GCAGC 8 cut(s) 104, 1230, 1250, 1285, 1395, 1700, 1733, 1766
MaeI CTAG 6 cut(s) 174, 678, 695, 1202, 1263, 1725
MaeII ACGT 1 cut(s) 1761
MaeIII GTNAC 4 cut(s) 633, 731, 1014, 1020
MalI GATC 3 cut(s) 960, 1338, 1747
MbiI CCGCTC 1 cut(s) 343
MboI GATC 3 cut(s) 958, 1336, 1745
MfeI CAATTG 1 cut(s) 617
MflI RGATCY 1 cut(s) 1336
MhlI GDGCHC 3 cut(s) 108, 186, 1707
MlyI GAGTC 5 cut(s) 139, 914, 1022, 1052, 1412
MmeI TCCRAC 2 cut(s) 580, 990
MreI CGCCGGCG 1 cut(s) 295
MroI TCCGGA 1 cut(s) 210
MroNI GCCGGC 1 cut(s) 295
MroXI GAANNNNTTC 3 cut(s) 204, 1365, 1852
MseI TTAA 9 cut(s) 405, 522, 560, 726, 1077, 1191, 1256, 1328, 1709
MslI CAYNNNNRTG 3 cut(s) 1383, 1434, 1740
MspA1I CMGCKG 2 cut(s) 249, 1168
MspCI CTTAAG 2 cut(s) 521, 1327
MspI CCGG 4 cut(s) 58, 211, 296, 1136
MspR9I CCNGG 2 cut(s) 378, 1136
MunI CAATTG 1 cut(s) 617
MvaI CCWGG 1 cut(s) 378
MvnI CGCG 2 cut(s) 189, 1651
MwoI GCNNNNNNNGC 8 cut(s) 202, 258, 496, 746, 821, 923, 1445, 1727
NaeI GCCGGC 1 cut(s) 297
NciI CCSGG 1 cut(s) 1136
NdeI CATATG 2 cut(s) 1460, 1737
NdeII GATC 3 cut(s) 958, 1336, 1745
NgoMIV GCCGGC 1 cut(s) 295
NlaIV GGNNCC 4 cut(s) 107, 163, 280, 1338
NmeAIII GCCGAG 2 cut(s) 132, 249
NmuCI GTSAC 1 cut(s) 1014
NspI RCATGY 3 cut(s) 476, 1118, 1347
NspV TTCGAA 4 cut(s) 571, 586, 1834, 1846
PagI TCATGA 1 cut(s) 1057
PaqCI CACCTGC 1 cut(s) 1682
PciI ACATGT 1 cut(s) 1343
PciSI GCTCTTC 1 cut(s) 1125
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 249
PdiI GCCGGC 1 cut(s) 297
PdmI GAANNNNTTC 3 cut(s) 204, 1365, 1852
PfeI GAWTC 9 cut(s) 8, 23, 214, 223, 517, 683, 761, 1283, 1352
PleI GAGTC 5 cut(s) 139, 914, 1021, 1051, 1411
PpsI GAGTC 5 cut(s) 139, 914, 1021, 1051, 1411
PscI ACATGT 1 cut(s) 1343
PsiI TTATAA 1 cut(s) 1598
Psp6I CCWGG 1 cut(s) 376
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 4 cut(s) 107, 163, 280, 1338
PspPI GGNCC 2 cut(s) 28, 1198
PstI CTGCAG 1 cut(s) 1275
PsuI RGATCY 1 cut(s) 1336
PvuII CAGCTG 1 cut(s) 1168
RsaI GTAC 5 cut(s) 71, 467, 801, 1106, 1562
RsaNI GTAC 5 cut(s) 70, 466, 800, 1105, 1561
RseI CAYNNNNRTG 3 cut(s) 1383, 1434, 1740
SalI GTCGAC 2 cut(s) 142, 239
SapI GCTCTTC 1 cut(s) 1125
SaqAI TTAA 9 cut(s) 405, 522, 560, 726, 1077, 1191, 1256, 1328, 1709
Sau3AI GATC 3 cut(s) 958, 1336, 1745
Sau96I GGNCC 2 cut(s) 28, 1198
ScaI AGTACT 2 cut(s) 1106, 1562
SchI GAGTC 5 cut(s) 139, 914, 1022, 1052, 1412
ScrFI CCNGG 2 cut(s) 378, 1136
SduI GDGCHC 3 cut(s) 108, 186, 1707
SfcI CTRYAG 2 cut(s) 1271, 1633
SfuI TTCGAA 4 cut(s) 571, 586, 1834, 1846
SgrAI CRCCGGYG 1 cut(s) 295
SinI GGWCC 1 cut(s) 28
SmiMI CAYNNNNRTG 3 cut(s) 1383, 1434, 1740
SmlI CTYRAG 4 cut(s) 485, 521, 1001, 1327
SmoI CTYRAG 4 cut(s) 485, 521, 1001, 1327
SpeI ACTAGT 1 cut(s) 694
SsiI CCGC 8 cut(s) 179, 187, 249, 273, 307, 343, 917, 1651
SspI AATATT 2 cut(s) 1072, 1593
SspMI CTAG 6 cut(s) 174, 678, 695, 1202, 1263, 1725
StyD4I CCNGG 2 cut(s) 376, 1134
StyI CCWWGG 2 cut(s) 173, 390
TaaI ACNGT 4 cut(s) 99, 731, 1020, 1560
TaiI ACGT 1 cut(s) 1764
TatI WGTACW 4 cut(s) 69, 465, 1104, 1560
TauI GCSGC 2 cut(s) 252, 1654
TfiI GAWTC 9 cut(s) 8, 23, 214, 223, 517, 683, 761, 1283, 1352
Tru1I TTAA 9 cut(s) 405, 522, 560, 726, 1077, 1191, 1256, 1328, 1709
Tru9I TTAA 9 cut(s) 405, 522, 560, 726, 1077, 1191, 1256, 1328, 1709
TscAI CASTG 2 cut(s) 1023, 1737
TseFI GTSAC 1 cut(s) 1014
TseI GCWGC 8 cut(s) 92, 1238, 1243, 1273, 1408, 1688, 1721, 1779
Tsp45I GTSAC 1 cut(s) 1014
TspRI CASTG 2 cut(s) 1023, 1737
Vha464I CTTAAG 2 cut(s) 521, 1327
VneI GTGCAC 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 7 cut(s) 879, 893, 907, 931, 1837, 1848, 1858
XceI RCATGY 3 cut(s) 476, 1118, 1347
XmaJI CCTAGG 1 cut(s) 173
XmiI GTMKAC 3 cut(s) 143, 240, 1646
XmnI GAANNNNTTC 3 cut(s) 204, 1365, 1852
XspI CTAG 6 cut(s) 174, 678, 695, 1202, 1263, 1725
ZrmI AGTACT 2 cut(s) 1106, 1562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.