TAF RNA Polymerase I subunit A
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G53200 AT1G53200 |
| fragaria_vesca | FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 |
| malus_domestica | MD03G1237200.v1.1 MD10G1064700.v1.1 |
| prunus_persica | Prupe.4G172200_v2.0.a1 |
| pyrus_communis | pycom03g18310 |
| rosa_chinensis | RchiOBHm_Chr5g0031851 RchiOBHm_Chr6g0312691 |
| rosa_laevigata | RLG00000013275 RLG00000033353 |
| rosa_multiflora | Rmu_sc0002188.1_g000001 Rmu_sc0007517.1_g000001 Rmu_sc0011639.1_g000001 Rmu_sc0012252.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00048420 |
| rosa_rugosa | Rorug04G0355200 Rorug05G0128100 Rorug05G0128200 Rorug06G0398300 Rorug06G0398300 Rorug06G0398400 Rorug06G0398500 |
| rosa_samantha | Rh5AG222300 Rh5BG222600 Rh5CG245700 Rh5DG227400 Rh6AG515800 Rh6BG527100 Rh6CG532000 Rh6DG518000 |
| rosa_wichuraiana | Rw5G020260 Rw6G044820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 868 |
| Acc65I | GGTACC | 1 cut(s) | 1093 |
| AccB1I | GGYRCC | 2 cut(s) | 141, 1093 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1127 |
| AccI | GTMKAC | 1 cut(s) | 860 |
| AciI | CCGC | 5 cut(s) | 217, 909, 1021, 1155, 1431 |
| AclWI | GGATC | 3 cut(s) | 646, 972, 1428 |
| AcoI | YGGCCR | 3 cut(s) | 418, 511, 1107 |
| AcsI | RAATTY | 4 cut(s) | 27, 487, 1100, 1245 |
| AcuI | CTGAAG | 1 cut(s) | 431 |
| AdeI | CACNNNGTG | 1 cut(s) | 1483 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 323, 957, 1038, 1127, 1172 |
| AgsI | TTSAA | 5 cut(s) | 439, 486, 611, 731, 1515 |
| AhlI | ACTAGT | 2 cut(s) | 617, 1694 |
| AjnI | CCWGG | 4 cut(s) | 654, 889, 1052, 1186 |
| AleI | CACNNNNGTG | 1 cut(s) | 1464 |
| Alw26I | GTCTC | 1 cut(s) | 1501 |
| AlwI | GGATC | 3 cut(s) | 646, 972, 1428 |
| AoxI | GGCC | 7 cut(s) | 53, 418, 511, 910, 948, 1107, 1630 |
| ApeKI | GCWGC | 9 cut(s) | 80, 335, 1028, 1162, 1274, 1428, 1541, 1556, 1683 |
| ApoI | RAATTY | 4 cut(s) | 27, 487, 1100, 1245 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 604, 636 |
| Asp718I | GGTACC | 1 cut(s) | 1093 |
| AspLEI | GCGC | 1 cut(s) | 1274 |
| AspS9I | GGNCC | 1 cut(s) | 1630 |
| AsuC2I | CCSGG | 1 cut(s) | 1538 |
| AsuHPI | GGTGA | 3 cut(s) | 206, 524, 932 |
| AsuII | TTCGAA | 1 cut(s) | 986 |
| BalI | TGGCCA | 2 cut(s) | 420, 513 |
| BanI | GGYRCC | 2 cut(s) | 141, 1093 |
| BbsI | GAAGAC | 1 cut(s) | 840 |
| BbvI | GCAGC | 9 cut(s) | 92, 347, 1040, 1174, 1286, 1440, 1528, 1568, 1695 |
| BccI | CCATC | 3 cut(s) | 13, 1090, 1379 |
| BceAI | ACGGC | 1 cut(s) | 1441 |
| BciT130I | CCWGG | 4 cut(s) | 656, 891, 1054, 1188 |
| BclI | TGATCA | 2 cut(s) | 457, 1585 |
| BcnI | CCSGG | 1 cut(s) | 1538 |
| BcoDI | GTCTC | 1 cut(s) | 1501 |
| BcuI | ACTAGT | 2 cut(s) | 617, 1694 |
| BfaI | CTAG | 5 cut(s) | 200, 267, 618, 1593, 1695 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1298 |
| BglII | AGATCT | 1 cut(s) | 261 |
| BmcAI | AGTACT | 1 cut(s) | 616 |
| Bme1390I | CCNGG | 5 cut(s) | 656, 891, 1054, 1188, 1538 |
| BmgT120I | GGNCC | 1 cut(s) | 1630 |
| BmiI | GGNNCC | 3 cut(s) | 143, 1095, 1475 |
| BmrFI | CCNGG | 5 cut(s) | 656, 891, 1054, 1188, 1538 |
| BmsI | GCATC | 8 cut(s) | 56, 67, 94, 228, 1312, 1369, 1452, 1510 |
| BpiI | GAAGAC | 1 cut(s) | 840 |
| Bpu14I | TTCGAA | 1 cut(s) | 986 |
| BpuEI | CTTGAG | 2 cut(s) | 899, 1252 |
| BpuMI | CCSGG | 1 cut(s) | 1538 |
| Bsa29I | ATCGAT | 1 cut(s) | 480 |
| BsaBI | GATNNNNATC | 1 cut(s) | 765 |
| BsaJI | CCNNGG | 5 cut(s) | 804, 1052, 1186, 1236, 1545 |
| BsaWI | WCCGGW | 3 cut(s) | 299, 604, 1470 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 323, 957, 1038, 1127, 1172 |
| Bse118I | RCCGGY | 2 cut(s) | 138, 1356 |
| Bse1I | ACTGG | 3 cut(s) | 56, 384, 468 |
| Bse3DI | GCAATG | 3 cut(s) | 345, 599, 1356 |
| Bse8I | GATNNNNATC | 1 cut(s) | 765 |
| BseBI | CCWGG | 4 cut(s) | 656, 891, 1054, 1188 |
| BseCI | ATCGAT | 1 cut(s) | 480 |
| BseDI | CCNNGG | 5 cut(s) | 804, 1052, 1186, 1236, 1545 |
| BseGI | GGATG | 3 cut(s) | 1232, 1360, 1490 |
| BseJI | GATNNNNATC | 1 cut(s) | 765 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 323, 957, 1038, 1127, 1172 |
| BseMI | GCAATG | 3 cut(s) | 345, 599, 1356 |
| BseMII | CTCAG | 4 cut(s) | 132, 195, 1217, 1413 |
| BseNI | ACTGG | 3 cut(s) | 56, 384, 468 |
| BseRI | GAGGAG | 3 cut(s) | 787, 1024, 1158 |
| BseXI | GCAGC | 9 cut(s) | 92, 347, 1040, 1174, 1286, 1440, 1528, 1568, 1695 |
| BseYI | CCCAGC | 1 cut(s) | 323 |
| BsgI | GTGCAG | 1 cut(s) | 1702 |
| BshFI | GGCC | 7 cut(s) | 55, 420, 513, 912, 950, 1109, 1632 |
| BshNI | GGYRCC | 2 cut(s) | 141, 1093 |
| BshVI | ATCGAT | 1 cut(s) | 480 |
| BsiSI | CCGG | 6 cut(s) | 139, 300, 605, 1357, 1471, 1538 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 323, 957, 1038, 1127, 1172 |
| BsmAI | GTCTC | 1 cut(s) | 1501 |
| BsmI | GAATGC | 1 cut(s) | 706 |
| BsnI | GGCC | 7 cut(s) | 55, 420, 513, 912, 950, 1109, 1632 |
| Bsp119I | TTCGAA | 1 cut(s) | 986 |
| Bsp1407I | TGTACA | 4 cut(s) | 640, 881, 1003, 1279 |
| Bsp19I | CCATGG | 2 cut(s) | 804, 1236 |
| BspACI | CCGC | 5 cut(s) | 217, 909, 1021, 1155, 1431 |
| BspANI | GGCC | 7 cut(s) | 55, 420, 513, 912, 950, 1109, 1632 |
| BspCNI | CTCAG | 4 cut(s) | 131, 194, 1218, 1412 |
| BspDI | ATCGAT | 1 cut(s) | 480 |
| BspHI | TCATGA | 2 cut(s) | 769, 1582 |
| BspLI | GGNNCC | 3 cut(s) | 143, 1095, 1475 |
| BspPI | GGATC | 3 cut(s) | 646, 972, 1428 |
| BspT104I | TTCGAA | 1 cut(s) | 986 |
| BspT107I | GGYRCC | 2 cut(s) | 141, 1093 |
| BsrDI | GCAATG | 3 cut(s) | 345, 599, 1356 |
| BsrFI | RCCGGY | 2 cut(s) | 138, 1356 |
| BsrGI | TGTACA | 4 cut(s) | 640, 881, 1003, 1279 |
| BsrI | ACTGG | 3 cut(s) | 56, 384, 468 |
| BssAI | RCCGGY | 2 cut(s) | 138, 1356 |
| BssECI | CCNNGG | 5 cut(s) | 804, 1052, 1186, 1236, 1545 |
| BssT1I | CCWWGG | 2 cut(s) | 804, 1236 |
| Bst2UI | CCWGG | 4 cut(s) | 656, 891, 1054, 1188 |
| Bst6I | CTCTTC | 3 cut(s) | 871, 1022, 1156 |
| BstAUI | TGTACA | 4 cut(s) | 640, 881, 1003, 1279 |
| BstBI | TTCGAA | 1 cut(s) | 986 |
| BstC8I | GCNNGC | 1 cut(s) | 254 |
| BstDEI | CTNAG | 5 cut(s) | 118, 181, 1226, 1399, 1552 |
| BstDSI | CCRYGG | 2 cut(s) | 804, 1236 |
| BstF5I | GGATG | 3 cut(s) | 1232, 1360, 1490 |
| BstHHI | GCGC | 1 cut(s) | 1274 |
| BstMAI | GTCTC | 1 cut(s) | 1501 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 39, 80, 99, 1298, 1317, 1346, 1440 |
| BstNI | CCWGG | 4 cut(s) | 656, 891, 1054, 1188 |
| BstSCI | CCNGG | 5 cut(s) | 654, 889, 1052, 1186, 1536 |
| BstV1I | GCAGC | 9 cut(s) | 92, 347, 1040, 1174, 1286, 1440, 1528, 1568, 1695 |
| BstV2I | GAAGAC | 1 cut(s) | 840 |
| BstX2I | RGATCY | 2 cut(s) | 261, 651 |
| BstYI | RGATCY | 2 cut(s) | 261, 651 |
| Bsu15I | ATCGAT | 1 cut(s) | 480 |
| BsuRI | GGCC | 7 cut(s) | 55, 420, 513, 912, 950, 1109, 1632 |
| BsuTUI | ATCGAT | 1 cut(s) | 480 |
| BtgI | CCRYGG | 2 cut(s) | 804, 1236 |
| BtgZI | GCGATG | 2 cut(s) | 117, 1335 |
| BtsCI | GGATG | 3 cut(s) | 1232, 1360, 1490 |
| BtsIMutI | CAGTG | 5 cut(s) | 63, 64, 200, 453, 1282 |
| Cac8I | GCNNGC | 1 cut(s) | 254 |
| CciI | TCATGA | 2 cut(s) | 769, 1582 |
| CfoI | GCGC | 1 cut(s) | 1274 |
| Cfr10I | RCCGGY | 2 cut(s) | 138, 1356 |
| Cfr13I | GGNCC | 1 cut(s) | 1630 |
| ClaI | ATCGAT | 1 cut(s) | 480 |
| CseI | GACGC | 1 cut(s) | 816 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 39, 74, 1086, 1121, 1590, 1625 |
| DdeI | CTNAG | 5 cut(s) | 118, 181, 1226, 1399, 1552 |
| DraIII | CACNNNGTG | 1 cut(s) | 1483 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 868 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 868 |
| EaeI | YGGCCR | 3 cut(s) | 418, 511, 1107 |
| Eam1104I | CTCTTC | 3 cut(s) | 871, 1022, 1156 |
| EarI | CTCTTC | 3 cut(s) | 871, 1022, 1156 |
| EciI | GGCGGA | 2 cut(s) | 1010, 1144 |
| Eco130I | CCWWGG | 2 cut(s) | 804, 1236 |
| Eco57I | CTGAAG | 1 cut(s) | 431 |
| EcoRII | CCWGG | 4 cut(s) | 654, 889, 1052, 1186 |
| EcoT14I | CCWWGG | 2 cut(s) | 804, 1236 |
| ErhI | CCWWGG | 2 cut(s) | 804, 1236 |
| FbaI | TGATCA | 2 cut(s) | 457, 1585 |
| FblI | GTMKAC | 1 cut(s) | 860 |
| FokI | GGATG | 3 cut(s) | 1219, 1347, 1477 |
| FspBI | CTAG | 5 cut(s) | 200, 267, 618, 1593, 1695 |
| GlaI | GCGC | 1 cut(s) | 1273 |
| GsaI | CCCAGC | 1 cut(s) | 327 |
| HaeIII | GGCC | 7 cut(s) | 55, 420, 513, 912, 950, 1109, 1632 |
| HapII | CCGG | 6 cut(s) | 139, 300, 605, 1357, 1471, 1538 |
| HgaI | GACGC | 1 cut(s) | 816 |
| HhaI | GCGC | 1 cut(s) | 1274 |
| Hin6I | GCGC | 1 cut(s) | 1272 |
| HinP1I | GCGC | 1 cut(s) | 1272 |
| HincII | GTYRAC | 3 cut(s) | 136, 861, 1711 |
| HindII | GTYRAC | 3 cut(s) | 136, 861, 1711 |
| HpaII | CCGG | 6 cut(s) | 139, 300, 605, 1357, 1471, 1538 |
| HphI | GGTGA | 3 cut(s) | 206, 524, 932 |
| Hpy166II | GTNNAC | 6 cut(s) | 64, 136, 861, 1006, 1282, 1711 |
| Hpy188I | TCNGA | 4 cut(s) | 651, 941, 1506, 1659 |
| Hpy188III | TCNNGA | 9 cut(s) | 200, 273, 461, 680, 770, 816, 1203, 1583, 1640 |
| Hpy8I | GTNNAC | 6 cut(s) | 64, 136, 861, 1006, 1282, 1711 |
| Hpy99I | CGWCG | 3 cut(s) | 862, 874, 1439 |
| HpyAV | CCTTC | 1 cut(s) | 327 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 39, 80, 99, 1298, 1317, 1346, 1440 |
| HpyF3I | CTNAG | 5 cut(s) | 118, 181, 1226, 1399, 1552 |
| HspAI | GCGC | 1 cut(s) | 1272 |
| KpnI | GGTACC | 1 cut(s) | 1097 |
| Ksp22I | TGATCA | 2 cut(s) | 457, 1585 |
| LmnI | GCTCC | 1 cut(s) | 1614 |
| Lsp1109I | GCAGC | 9 cut(s) | 92, 347, 1040, 1174, 1286, 1440, 1528, 1568, 1695 |
| LweI | GCATC | 8 cut(s) | 56, 67, 94, 228, 1312, 1369, 1452, 1510 |
| MaeI | CTAG | 5 cut(s) | 200, 267, 618, 1593, 1695 |
| MaeIII | GTNAC | 8 cut(s) | 242, 302, 1066, 1250, 1466, 1483, 1523, 1715 |
| MfeI | CAATTG | 1 cut(s) | 129 |
| MflI | RGATCY | 2 cut(s) | 261, 651 |
| MlsI | TGGCCA | 2 cut(s) | 420, 513 |
| MluNI | TGGCCA | 2 cut(s) | 420, 513 |
| MlyI | GAGTC | 3 cut(s) | 535, 610, 1376 |
| MmeI | TCCRAC | 1 cut(s) | 541 |
| Mox20I | TGGCCA | 2 cut(s) | 420, 513 |
| MscI | TGGCCA | 2 cut(s) | 420, 513 |
| MseI | TTAA | 4 cut(s) | 14, 407, 1137, 1704 |
| MslI | CAYNNNNRTG | 4 cut(s) | 240, 774, 840, 1464 |
| Msp20I | TGGCCA | 2 cut(s) | 420, 513 |
| MspA1I | CMGCKG | 3 cut(s) | 355, 1277, 1431 |
| MspI | CCGG | 6 cut(s) | 139, 300, 605, 1357, 1471, 1538 |
| MspR9I | CCNGG | 5 cut(s) | 656, 891, 1054, 1188, 1538 |
| MunI | CAATTG | 1 cut(s) | 129 |
| Mva1269I | GAATGC | 1 cut(s) | 706 |
| MvaI | CCWGG | 4 cut(s) | 656, 891, 1054, 1188 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 39, 80, 99, 1298, 1317, 1346, 1440 |
| NciI | CCSGG | 1 cut(s) | 1538 |
| NcoI | CCATGG | 2 cut(s) | 804, 1236 |
| NlaIV | GGNNCC | 3 cut(s) | 143, 1095, 1475 |
| NmeAIII | GCCGAG | 2 cut(s) | 1135, 1570 |
| NmuCI | GTSAC | 5 cut(s) | 242, 1250, 1466, 1483, 1715 |
| NspV | TTCGAA | 1 cut(s) | 986 |
| OliI | CACNNNNGTG | 1 cut(s) | 1464 |
| PagI | TCATGA | 2 cut(s) | 769, 1582 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 866, 1431, 1443 |
| PctI | GAATGC | 1 cut(s) | 706 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1127 |
| PleI | GAGTC | 3 cut(s) | 534, 609, 1376 |
| PpsI | GAGTC | 3 cut(s) | 534, 609, 1376 |
| Psp6I | CCWGG | 4 cut(s) | 654, 889, 1052, 1186 |
| PspFI | CCCAGC | 1 cut(s) | 323 |
| PspGI | CCWGG | 4 cut(s) | 654, 889, 1052, 1186 |
| PspN4I | GGNNCC | 3 cut(s) | 143, 1095, 1475 |
| PspPI | GGNCC | 1 cut(s) | 1630 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 886, 918 |
| PsuI | RGATCY | 2 cut(s) | 261, 651 |
| PvuII | CAGCTG | 2 cut(s) | 355, 1277 |
| RseI | CAYNNNNRTG | 4 cut(s) | 240, 774, 840, 1464 |
| SalI | GTCGAC | 1 cut(s) | 859 |
| SaqAI | TTAA | 4 cut(s) | 14, 407, 1137, 1704 |
| Sau96I | GGNCC | 1 cut(s) | 1630 |
| ScaI | AGTACT | 1 cut(s) | 616 |
| SchI | GAGTC | 3 cut(s) | 535, 610, 1376 |
| ScrFI | CCNGG | 5 cut(s) | 656, 891, 1054, 1188, 1538 |
| SfaNI | GCATC | 8 cut(s) | 56, 67, 94, 228, 1312, 1369, 1452, 1510 |
| SfuI | TTCGAA | 1 cut(s) | 986 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 240, 774, 840, 1464 |
| SmlI | CTYRAG | 2 cut(s) | 914, 1267 |
| SmoI | CTYRAG | 2 cut(s) | 914, 1267 |
| SpeI | ACTAGT | 2 cut(s) | 617, 1694 |
| SsiI | CCGC | 5 cut(s) | 217, 909, 1021, 1155, 1431 |
| SspMI | CTAG | 5 cut(s) | 200, 267, 618, 1593, 1695 |
| StyD4I | CCNGG | 5 cut(s) | 654, 889, 1052, 1186, 1536 |
| StyI | CCWWGG | 2 cut(s) | 804, 1236 |
| TaqI | TCGA | 7 cut(s) | 480, 698, 860, 986, 1262, 1446, 1641 |
| TatI | WGTACW | 7 cut(s) | 493, 614, 640, 881, 1003, 1279, 1598 |
| TauI | GCSGC | 2 cut(s) | 912, 1434 |
| Tru1I | TTAA | 4 cut(s) | 14, 407, 1137, 1704 |
| Tru9I | TTAA | 4 cut(s) | 14, 407, 1137, 1704 |
| TscAI | CASTG | 5 cut(s) | 63, 71, 200, 460, 1289 |
| TseFI | GTSAC | 5 cut(s) | 242, 1250, 1466, 1483, 1715 |
| TseI | GCWGC | 9 cut(s) | 80, 335, 1028, 1162, 1274, 1428, 1541, 1556, 1683 |
| Tsp45I | GTSAC | 5 cut(s) | 242, 1250, 1466, 1483, 1715 |
| TspDTI | ATGAA | 5 cut(s) | 156, 824, 840, 1322, 1367 |
| TspGWI | ACGGA | 1 cut(s) | 558 |
| TspRI | CASTG | 5 cut(s) | 63, 71, 200, 460, 1289 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1127 |
| XapI | RAATTY | 4 cut(s) | 27, 487, 1100, 1245 |
| XbaI | TCTAGA | 1 cut(s) | 199 |
| XmiI | GTMKAC | 1 cut(s) | 860 |
| XspI | CTAG | 5 cut(s) | 200, 267, 618, 1593, 1695 |
| ZrmI | AGTACT | 1 cut(s) | 616 |