Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000449.1

Orthogroup ID

OG0008587

Physical Location & Seq

Genomic Coordinates Forward (+)

45631 .. 49960

Gene Structure 4330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atgggttactctataatcacaccaccacccactcctccacctcttctccacccgaacccgaacccgaagcccaaacccaatgccctctccctgacccgacgctccctcctcctctcctccacctccctctccctcaccaccctcccctcctccgccgccgccgcctcccctccgccgcccgacaccaccatcaccaaccgcgtcttcatggacttcagcctctgccccacctacttccgctggtcctccgagcaacccgtcctctgccccgacccggtccctctgggccgggtcgtcctgggcctctacggccaccacgtccccatcaccgtcgcgaacttcaaggccatggtcacctccgccgcctacaagggcacaaccgtccataaactcttcccgggtcaattcttcctcgcgggccaccagggcgataaacccggcgacgtccggcggcccattggcctcgtcgccccgaacaccgagaccgtcgattccagggcgtttgagttgactcactcccggccagggcttctctcccttagtctatcggagaacgacgacgacgacgagatcaagctcgacccggattaccgaaacgttgagttctccatcactactggacccggcccatgtcctcagctcgattacaagaacattgtcttcggctcactacttgaaggtttggatgttgtgacggctatagcagctataccgacgtacaggccatcggagagaatacagcagttcaacgattttgcaacgtttatcggagatgatagagcaatgcaggctcgggcgctgtggaataagcctctcaaaactgtgtatatcagtgactgtggtgagctcaaagttgcaaagccttccctttctcctcctacggagtggatcgaacaccggaatctgggcaattgcgccaaggtgaagatcggggagtggatcgatgccggagatgagcagcacagacgggttggtcctcgacaccggagtctggaagagagaggtaggctgcgtggaggtctcagtgttccaagcatagcggaggcgcttgttgaattgaagcatctcgatgtcgctctcacgtcgccggcgactgattctccgatagtgatgacgaagaagagccaaaatggttgggctgtgctttatactcgatcagcaggatttcgctcgccgacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0032991 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0044877 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

393

Amino Acids

42.94

Weight (kDa)

8.21

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	95 - 243	6.1e-19	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35100 AT5G35100 AT5G35100
fragaria_vesca	FvH4_1g01710 FvH4_1g01710 FvH4_1g01710
malus_domestica	MD15G1159700.v1.1
prunus_persica	Prupe.7G254600_v2.0.a1 Prupe.7G254600_v2.0.a1
pyrus_communis	pycom15g14340
rosa_chinensis	RchiOBHm_Chr2g0086651
rosa_laevigata	RLG00000013558 RLG00000015770
rosa_multiflora	Rmu_co8357025.1_g000001 Rmu_sc0002376.1_g000002 Rmu_ssc0000449.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154350
rosa_rugosa	Rorug01G0468100
rosa_samantha	Rh2AG020000 Rh2BG020000 Rh2CG019600 Rh2DG020500
rosa_wichuraiana	Rw2G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	972, 987
AatII	GACGTC	1 cut(s)	447
AccII	CGCG	3 cut(s)	201, 335, 416
AclI	AACGTT	2 cut(s)	597, 761
AclWI	GGATC	2 cut(s)	896, 947
AcoI	YGGCCR	2 cut(s)	310, 521
AcuI	CTGAAG	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	444
AfaI	GTAC	1 cut(s)	719
AfiI	CCNNNNNNNGG	4 cut(s)	274, 525, 904, 991
AgsI	TTSAA	5 cut(s)	343, 677, 748, 1055, 1060
AjiI	CACGTC	2 cut(s)	319, 1083
AjnI	CCWGG	4 cut(s)	297, 423, 494, 523
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	4 cut(s)	577, 640, 707, 847
AluI	AGCT	4 cut(s)	577, 640, 707, 847
Alw21I	GWGCWC	1 cut(s)	849
Alw26I	GTCTC	2 cut(s)	476, 1025
AlwI	GGATC	2 cut(s)	896, 947
AlwNI	CAGNNNCTG	2 cut(s)	222, 837
Ama87I	CYCGRG	2 cut(s)	397, 792
ApeKI	GCWGC	3 cut(s)	704, 958, 1009
AspLEI	GCGC	3 cut(s)	799, 917, 1048
AspS9I	GGNCC	9 cut(s)	243, 277, 286, 301, 418, 453, 620, 626, 974
AsuC2I	CCSGG	8 cut(s)	275, 290, 398, 399, 438, 520, 584, 624
AsuHPI	GGTGA	6 cut(s)	127, 184, 319, 346, 854, 934
AvaI	CYCGRG	2 cut(s)	397, 792
AvaII	GGWCC	4 cut(s)	243, 277, 620, 974
BaeGI	GKGCMC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	849
BbsI	GAAGAC	2 cut(s)	196, 652
Bbv12I	GWGCWC	1 cut(s)	849
BbvCI	CCTCAGC	1 cut(s)	636
BbvI	GCAGC	3 cut(s)	716, 970, 996
BccI	CCATC	4 cut(s)	197, 332, 617, 733
BceAI	ACGGC	2 cut(s)	325, 711
BciT130I	CCWGG	4 cut(s)	299, 425, 496, 525
BcnI	CCSGG	8 cut(s)	275, 290, 398, 399, 438, 520, 584, 624
BcoDI	GTCTC	2 cut(s)	476, 1025
BfmI	CTRYAG	1 cut(s)	699
BfoI	RGCGCY	2 cut(s)	800, 1049
BglI	GCCNNNNNGGC	2 cut(s)	309, 426
BisI	GCNGC	9 cut(s)	156, 159, 162, 176, 363, 452, 705, 959, 1010
BlsI	GCNGC	9 cut(s)	157, 160, 163, 177, 364, 453, 706, 960, 1011
Bme18I	GGWCC	4 cut(s)	243, 277, 620, 974
BmeT110I	CYCGRG	2 cut(s)	397, 792
BmgBI	CACGTC	2 cut(s)	319, 1083
BmgT120I	GGNCC	9 cut(s)	243, 277, 286, 301, 418, 453, 620, 626, 974
BmiI	GGNNCC	2 cut(s)	279, 622
BmsI	GCATC	2 cut(s)	934, 1072
BpiI	GAAGAC	2 cut(s)	196, 652
Bpu10I	CCTNAGC	1 cut(s)	636
BpuMI	CCSGG	8 cut(s)	275, 290, 398, 399, 438, 520, 584, 624
Bsa29I	ATCGAT	1 cut(s)	942
BsaHI	GRCGYC	1 cut(s)	444
BsaI	GGTCTC	2 cut(s)	476, 1025
BsaJI	CCNNGG	7 cut(s)	298, 348, 397, 424, 495, 524, 918
BsaWI	WCCGGW	2 cut(s)	897, 984
BsaXI	ACNNNNNCTCC	6 cut(s)	30, 60, 90, 120, 1084, 1114
Bsc4I	CCNNNNNNNGG	4 cut(s)	274, 525, 904, 991
Bse118I	RCCGGY	1 cut(s)	1087
Bse1I	ACTGG	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	789
BseBI	CCWGG	4 cut(s)	299, 425, 496, 525
BseCI	ATCGAT	1 cut(s)	942
BseDI	CCNNGG	7 cut(s)	298, 348, 397, 424, 495, 524, 918
BseGI	GGATG	1 cut(s)	691
BseLI	CCNNNNNNNGG	4 cut(s)	274, 525, 904, 991
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	2 cut(s)	650, 1036
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	6 cut(s)	24, 98, 101, 106, 139, 864
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	3 cut(s)	716, 970, 996
Bsh1236I	CGCG	3 cut(s)	201, 335, 416
BshVI	ATCGAT	1 cut(s)	942
BsiHKAI	GWGCWC	1 cut(s)	849
BsiHKCI	CYCGRG	2 cut(s)	397, 792
BslFI	GGGAC	2 cut(s)	263, 305
BslI	CCNNNNNNNGG	4 cut(s)	274, 525, 904, 991
BsmAI	GTCTC	2 cut(s)	476, 1025
BsmFI	GGGAC	2 cut(s)	263, 305
Bso31I	GGTCTC	2 cut(s)	476, 1025
BsoBI	CYCGRG	2 cut(s)	397, 792
Bsp1286I	GDGCHC	2 cut(s)	377, 849
Bsp143I	GATC	5 cut(s)	570, 888, 927, 939, 1154
Bsp19I	CCATGG	1 cut(s)	348
Bsp68I	TCGCGA	1 cut(s)	335
BspCNI	CTCAG	2 cut(s)	649, 1035
BspDI	ATCGAT	1 cut(s)	942
BspFNI	CGCG	3 cut(s)	201, 335, 416
BspLI	GGNNCC	2 cut(s)	279, 622
BspPI	GGATC	2 cut(s)	896, 947
BspQI	GCTCTTC	1 cut(s)	1115
BspTNI	GGTCTC	2 cut(s)	476, 1025
BsrDI	GCAATG	1 cut(s)	789
BsrFI	RCCGGY	1 cut(s)	1087
BsrI	ACTGG	1 cut(s)	622
BssAI	RCCGGY	1 cut(s)	1087
BssECI	CCNNGG	7 cut(s)	298, 348, 397, 424, 495, 524, 918
BssMI	GATC	5 cut(s)	570, 888, 927, 939, 1154
BssNI	GRCGYC	1 cut(s)	444
BssT1I	CCWWGG	2 cut(s)	348, 918
Bst2UI	CCWGG	4 cut(s)	299, 425, 496, 525
Bst4CI	ACNGT	5 cut(s)	331, 382, 487, 823, 839
Bst6I	CTCTTC	4 cut(s)	48, 398, 990, 1115
BstACI	GRCGYC	1 cut(s)	444
BstC8I	GCNNGC	4 cut(s)	418, 789, 1089, 1172
BstDEI	CTNAG	3 cut(s)	539, 636, 1022
BstDSI	CCRYGG	1 cut(s)	348
BstEII	GGTNACC	1 cut(s)	352
BstF5I	GGATG	1 cut(s)	691
BstFNI	CGCG	3 cut(s)	201, 335, 416
BstH2I	RGCGCY	2 cut(s)	800, 1049
BstHHI	GCGC	3 cut(s)	799, 917, 1048
BstKTI	GATC	5 cut(s)	573, 891, 930, 942, 1157
BstMAI	GTCTC	2 cut(s)	476, 1025
BstMBI	GATC	5 cut(s)	570, 888, 927, 939, 1154
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 309, 426, 704, 788
BstNI	CCWGG	4 cut(s)	299, 425, 496, 525
BstPI	GGTNACC	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	699
BstSLI	GKGCMC	1 cut(s)	377
BstUI	CGCG	3 cut(s)	201, 335, 416
BstV1I	GCAGC	3 cut(s)	716, 970, 996
BstV2I	GAAGAC	2 cut(s)	196, 652
Bsu15I	ATCGAT	1 cut(s)	942
BsuTUI	ATCGAT	1 cut(s)	942
BtgI	CCRYGG	1 cut(s)	348
BtrI	CACGTC	2 cut(s)	319, 1083
BtsCI	GGATG	1 cut(s)	691
BtsIMutI	CAGTG	2 cut(s)	838, 1030
BtuMI	TCGCGA	1 cut(s)	335
Cac8I	GCNNGC	4 cut(s)	418, 789, 1089, 1172
CaiI	CAGNNNCTG	2 cut(s)	222, 837
CfoI	GCGC	3 cut(s)	799, 917, 1048
Cfr10I	RCCGGY	1 cut(s)	1087
Cfr13I	GGNCC	9 cut(s)	243, 277, 286, 301, 418, 453, 620, 626, 974
Cfr9I	CCCGGG	1 cut(s)	397
ClaI	ATCGAT	1 cut(s)	942
CseI	GACGC	2 cut(s)	108, 190
Csp6I	GTAC	1 cut(s)	718
CviAII	CATG	3 cut(s)	208, 349, 630
CviQI	GTAC	1 cut(s)	718
DdeI	CTNAG	3 cut(s)	539, 636, 1022
DpnI	GATC	5 cut(s)	572, 890, 929, 941, 1156
DpnII	GATC	5 cut(s)	570, 888, 927, 939, 1154
DrdI	GACNNNNNNGTC	2 cut(s)	972, 987
DseDI	GACNNNNNNGTC	2 cut(s)	972, 987
EaeI	YGGCCR	2 cut(s)	310, 521
Eam1104I	CTCTTC	4 cut(s)	48, 398, 990, 1115
EarI	CTCTTC	4 cut(s)	48, 398, 990, 1115
EciI	GGCGGA	3 cut(s)	142, 162, 349
Ecl136II	GAGCTC	1 cut(s)	847
Eco130I	CCWWGG	2 cut(s)	348, 918
Eco24I	GRGCYC	1 cut(s)	849
Eco31I	GGTCTC	2 cut(s)	476, 1025
Eco47I	GGWCC	4 cut(s)	243, 277, 620, 974
Eco53kI	GAGCTC	1 cut(s)	847
Eco57I	CTGAAG	1 cut(s)	199
Eco88I	CYCGRG	2 cut(s)	397, 792
Eco91I	GGTNACC	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	847
EcoO65I	GGTNACC	1 cut(s)	352
EcoRII	CCWGG	4 cut(s)	297, 423, 494, 523
EcoT14I	CCWWGG	2 cut(s)	348, 918
EcoT38I	GRGCYC	1 cut(s)	849
ErhI	CCWWGG	2 cut(s)	348, 918
FaeI	CATG	3 cut(s)	211, 352, 633
FaqI	GGGAC	2 cut(s)	263, 305
FatI	CATG	3 cut(s)	207, 348, 629
FauI	CCCGC	1 cut(s)	409
Fnu4HI	GCNGC	9 cut(s)	156, 159, 162, 176, 363, 452, 705, 959, 1010
FokI	GGATG	1 cut(s)	698
FriOI	GRGCYC	1 cut(s)	849
Fsp4HI	GCNGC	9 cut(s)	156, 159, 162, 176, 363, 452, 705, 959, 1010
GlaI	GCGC	3 cut(s)	798, 916, 1047
GluI	GCNGC	9 cut(s)	156, 159, 162, 176, 363, 452, 705, 959, 1010
HaeII	RGCGCY	2 cut(s)	800, 1049
HgaI	GACGC	2 cut(s)	108, 190
HhaI	GCGC	3 cut(s)	799, 917, 1048
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	3 cut(s)	211, 352, 633
Hin6I	GCGC	3 cut(s)	797, 915, 1046
HinP1I	GCGC	3 cut(s)	797, 915, 1046
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HinfI	GANTC	5 cut(s)	491, 511, 901, 988, 1097
HphI	GGTGA	6 cut(s)	127, 184, 319, 346, 854, 934
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	5 cut(s)	250, 550, 730, 770, 1104
Hpy188III	TCNNGA	3 cut(s)	334, 992, 1067
Hpy8I	GTNNAC	1 cut(s)	510
HpyAV	CCTTC	2 cut(s)	671, 873
HpyCH4III	ACNGT	5 cut(s)	331, 382, 487, 823, 839
HpyCH4IV	ACGT	6 cut(s)	318, 444, 597, 716, 761, 1082
HpyCH4V	TGCA	3 cut(s)	758, 787, 857
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 309, 426, 704, 788
HpyF3I	CTNAG	3 cut(s)	539, 636, 1022
HpySE526I	ACGT	6 cut(s)	318, 444, 597, 716, 761, 1082
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	3 cut(s)	211, 352, 633
HspAI	GCGC	3 cut(s)	797, 915, 1046
KroI	GCCGGC	1 cut(s)	1087
KroNI	GCCGGC	1 cut(s)	1089
Kzo9I	GATC	5 cut(s)	570, 888, 927, 939, 1154
LguI	GCTCTTC	1 cut(s)	1115
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	3 cut(s)	716, 970, 996
LweI	GCATC	2 cut(s)	934, 1072
MaeII	ACGT	6 cut(s)	318, 444, 597, 716, 761, 1082
MaeIII	GTNAC	4 cut(s)	5, 352, 691, 833
MalI	GATC	5 cut(s)	572, 890, 929, 941, 1156
MboI	GATC	5 cut(s)	570, 888, 927, 939, 1154
MboII	GAAGA	9 cut(s)	35, 196, 385, 400, 652, 937, 1007, 1129, 1132
MfeI	CAATTG	1 cut(s)	910
MhlI	GDGCHC	2 cut(s)	377, 849
MluCI	AATT	3 cut(s)	404, 910, 1055
MlyI	GAGTC	2 cut(s)	505, 997
MreI	CGCCGGCG	1 cut(s)	1087
MroNI	GCCGGC	1 cut(s)	1087
MslI	CAYNNNNRTG	1 cut(s)	1068
MspA1I	CMGCKG	1 cut(s)	240
MunI	CAATTG	1 cut(s)	910
MvaI	CCWGG	4 cut(s)	299, 425, 496, 525
MvnI	CGCG	3 cut(s)	201, 335, 416
MwoI	GCNNNNNNNGC	5 cut(s)	161, 309, 426, 704, 788
NaeI	GCCGGC	1 cut(s)	1089
NciI	CCSGG	8 cut(s)	275, 290, 398, 399, 438, 520, 584, 624
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	5 cut(s)	570, 888, 927, 939, 1154
NgoMIV	GCCGGC	1 cut(s)	1087
NlaIII	CATG	3 cut(s)	211, 352, 633
NlaIV	GGNNCC	2 cut(s)	279, 622
NmuCI	GTSAC	3 cut(s)	352, 691, 833
NruI	TCGCGA	1 cut(s)	335
PciSI	GCTCTTC	1 cut(s)	1115
PcsI	WCGNNNNNNNCGW	4 cut(s)	315, 561, 564, 1088
PdiI	GCCGGC	1 cut(s)	1089
PfeI	GAWTC	3 cut(s)	491, 901, 1097
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	9 cut(s)	157, 160, 163, 177, 364, 453, 706, 960, 1011
PleI	GAGTC	2 cut(s)	505, 996
PpsI	GAGTC	2 cut(s)	505, 996
Psp124BI	GAGCTC	1 cut(s)	849
Psp1406I	AACGTT	2 cut(s)	597, 761
Psp6I	CCWGG	4 cut(s)	297, 423, 494, 523
PspEI	GGTNACC	1 cut(s)	352
PspGI	CCWGG	4 cut(s)	297, 423, 494, 523
PspN4I	GGNNCC	2 cut(s)	279, 622
PspPI	GGNCC	9 cut(s)	243, 277, 286, 301, 418, 453, 620, 626, 974
PstNI	CAGNNNCTG	2 cut(s)	222, 837
PsyI	GACNNNGTC	1 cut(s)	275
RruI	TCGCGA	1 cut(s)	335
RsaI	GTAC	1 cut(s)	719
RsaNI	GTAC	1 cut(s)	718
RseI	CAYNNNNRTG	1 cut(s)	1068
SacI	GAGCTC	1 cut(s)	849
SapI	GCTCTTC	1 cut(s)	1115
SatI	GCNGC	9 cut(s)	156, 159, 162, 176, 363, 452, 705, 959, 1010
Sau3AI	GATC	5 cut(s)	570, 888, 927, 939, 1154
Sau96I	GGNCC	9 cut(s)	243, 277, 286, 301, 418, 453, 620, 626, 974
SchI	GAGTC	2 cut(s)	505, 997
SduI	GDGCHC	2 cut(s)	377, 849
SfaNI	GCATC	2 cut(s)	934, 1072
SfcI	CTRYAG	1 cut(s)	699
SfiI	GGCCNNNNNGGCC	1 cut(s)	309
SgrAI	CRCCGGYG	1 cut(s)	1087
SinI	GGWCC	4 cut(s)	243, 277, 620, 974
SmaI	CCCGGG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	1068
Sse9I	AATT	3 cut(s)	404, 910, 1055
SstI	GAGCTC	1 cut(s)	849
StyI	CCWWGG	2 cut(s)	348, 918
TaaI	ACNGT	5 cut(s)	331, 382, 487, 823, 839
TaiI	ACGT	6 cut(s)	321, 447, 600, 719, 764, 1085
TaqI	TCGA	8 cut(s)	489, 579, 642, 891, 942, 979, 1068, 1153
TasI	AATT	3 cut(s)	404, 910, 1055
TauI	GCSGC	6 cut(s)	158, 161, 164, 178, 365, 454
TfiI	GAWTC	3 cut(s)	491, 901, 1097
TscAI	CASTG	2 cut(s)	838, 1030
TseFI	GTSAC	3 cut(s)	352, 691, 833
TseI	GCWGC	3 cut(s)	704, 958, 1009
Tsp45I	GTSAC	3 cut(s)	352, 691, 833
TspDTI	ATGAA	1 cut(s)	196
TspGWI	ACGGA	1 cut(s)	896
TspMI	CCCGGG	1 cut(s)	397
TspRI	CASTG	2 cut(s)	838, 1030
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	4 cut(s)	243, 277, 620, 974
XmaI	CCCGGG	1 cut(s)	397
ZraI	GACGTC	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.