Rmu_ssc0000468.1_g000005

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000468.1
OG0005983
Physical Location & Seq
Reverse (-)
23213 .. 27029
3817 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 828 bp
atggatcggctaaccaaccaccctcacgaaaaagagtgcaagttggataggaatcaaggatcaaattcagcaataacttcggttgcgagtcaaacatctctacgcggccgtcggactacggtcgtctccgatttcaagattcaaccttgttcggattttgcaatcagaaatctgcgatcggtccacttgttgttcttgaattggaggagcagagtctctacttccctgagcagccagcaggatgttgatgatgactgcatgattgccgttgtactatcagaagagtatgctaagttggatggtgcagttgctagacgcctttccaacctggcacctattccgcatatcccacggataaattcctacatccccaacataagtgatgcaagtttggatcatcaacggcttctccagaggttgcatgtctatcgtttatatgaagtaaaggtttctggtgatggcaattgtcagtttcgcgcactttcagaccagatttacaagtctccagattatcacaagcatgtgcggaaagagattgttaaacagatcaaagactatcgttctcaatatgaaggctatgtccctatgaagtacaaacactattacaagaaaatggcaaaatccggtgaatggggtgatcatgttaccttacaagcagcagctgataagtttgaagcgaagatttgtcttttgacatcattcagagatacttgctttattgaaattatgcctcaattccagccaccaaaacgtggattgtgggcacttggcttaattgtttcagccaaaatccctgaaaataacttgtgcttcttcccagtttcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

275

Amino Acids

31.61

Weight (kDa)

9.24

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 152 - 241 7.7e-13 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 331
AccB7I CCANNNNNTGG 1 cut(s) 752
AccII CGCG 2 cut(s) 105, 477
AciI CCGC 3 cut(s) 105, 341, 526
AclWI GGATC 3 cut(s) 12, 67, 402
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 2 cut(s) 64, 358
AcyI GRCGYC 1 cut(s) 316
AfaI GTAC 2 cut(s) 273, 593
AfiI CCNNNNNNNGG 2 cut(s) 630, 752
AgsI TTSAA 5 cut(s) 136, 143, 199, 674, 722
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 1 cut(s) 662
AluI AGCT 1 cut(s) 662
Alw26I GTCTC 3 cut(s) 130, 220, 507
AlwI GGATC 3 cut(s) 12, 67, 402
AlwNI CAGNNNCTG 1 cut(s) 662
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 3 cut(s) 231, 656, 659
ApoI RAATTY 2 cut(s) 64, 358
AspLEI GCGC 1 cut(s) 479
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 3 cut(s) 467, 638, 647
AvaII GGWCC 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 766
BanI GGYRCC 1 cut(s) 331
BbvI GCAGC 3 cut(s) 243, 668, 671
BccI CCATC 2 cut(s) 293, 452
BceAI ACGGC 3 cut(s) 93, 251, 419
BcgI CGANNNNNNTGC 4 cut(s) 60, 94, 410, 444
BciT130I CCWGG 1 cut(s) 329
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 3 cut(s) 130, 220, 507
BfaI CTAG 1 cut(s) 312
BisI GCNGC 4 cut(s) 106, 232, 657, 660
BlsI GCNGC 4 cut(s) 107, 233, 658, 661
Bme1390I CCNGG 1 cut(s) 329
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 333
BmrFI CCNGG 1 cut(s) 329
BmrI ACTGGG 1 cut(s) 812
BmsI GCATC 1 cut(s) 373
BmuI ACTGGG 1 cut(s) 812
BoxI GACNNNNGTC 1 cut(s) 119
BpmI CTGGAG 2 cut(s) 395, 489
Bpu10I CCTNAGC 1 cut(s) 227
BsaBI GATNNNNATC 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 350
BsaWI WCCGGW 1 cut(s) 623
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
Bsc4I CCNNNNNNNGG 2 cut(s) 630, 752
Bse1I ACTGG 1 cut(s) 818
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 3 cut(s) 247, 304, 366
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 2 cut(s) 630, 752
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 818
BseRI GAGGAG 1 cut(s) 220
BseSI GKGCMC 1 cut(s) 766
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 3 cut(s) 243, 668, 671
BsgI GTGCAG 1 cut(s) 324
Bsh1236I CGCG 2 cut(s) 105, 477
Bsh1285I CGRYCG 3 cut(s) 109, 123, 179
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 331
BsiEI CGRYCG 3 cut(s) 109, 123, 179
BsiSI CCGG 1 cut(s) 624
BslFI GGGAC 1 cut(s) 566
BslI CCNNNNNNNGG 2 cut(s) 630, 752
BsmAI GTCTC 3 cut(s) 130, 220, 507
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 566
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 766
Bsp143I GATC 6 cut(s) 4, 59, 176, 394, 546, 637
BspACI CCGC 3 cut(s) 105, 341, 526
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 219
BspFNI CGCG 2 cut(s) 105, 477
BspHI TCATGA 1 cut(s) 824
BspLI GGNNCC 1 cut(s) 333
BspPI GGATC 3 cut(s) 12, 67, 402
BspT107I GGYRCC 1 cut(s) 331
BsrI ACTGG 1 cut(s) 818
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 6 cut(s) 4, 59, 176, 394, 546, 637
BssNI GRCGYC 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 276
BstACI GRCGYC 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 2 cut(s) 227, 291
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 3 cut(s) 247, 304, 366
BstFNI CGCG 2 cut(s) 105, 477
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 6 cut(s) 7, 62, 179, 397, 549, 640
BstMAI GTCTC 3 cut(s) 130, 220, 507
BstMBI GATC 6 cut(s) 4, 59, 176, 394, 546, 637
BstMCI CGRYCG 3 cut(s) 109, 123, 179
BstNI CCWGG 1 cut(s) 329
BstNSI RCATGY 2 cut(s) 425, 524
BstPAI GACNNNNGTC 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 327
BstSLI GKGCMC 1 cut(s) 766
BstUI CGCG 2 cut(s) 105, 477
BstV1I GCAGC 3 cut(s) 243, 668, 671
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 350
BtsCI GGATG 3 cut(s) 247, 304, 366
Cac8I GCNNGC 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 662
CciI TCATGA 1 cut(s) 824
CfoI GCGC 1 cut(s) 479
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 1 cut(s) 324
Csp6I GTAC 2 cut(s) 272, 592
CviAII CATG 5 cut(s) 259, 422, 521, 641, 825
CviJI RGCY 9 cut(s) 10, 108, 234, 406, 576, 662, 742, 771, 785
CviKI_1 RGCY 9 cut(s) 10, 108, 234, 406, 576, 662, 742, 771, 785
CviQI GTAC 2 cut(s) 272, 592
DdeI CTNAG 2 cut(s) 227, 291
DpnI GATC 6 cut(s) 6, 61, 178, 396, 548, 639
DpnII GATC 6 cut(s) 4, 59, 176, 394, 546, 637
EaeI YGGCCR 1 cut(s) 106
EagI CGGCCG 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
EclXI CGGCCG 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 181
Eco52I CGGCCG 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 327
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 5 cut(s) 262, 425, 524, 644, 828
FaqI GGGAC 1 cut(s) 566
FatI CATG 5 cut(s) 258, 421, 520, 640, 824
FbaI TGATCA 1 cut(s) 637
Fnu4HI GCNGC 4 cut(s) 106, 232, 657, 660
FokI GGATG 3 cut(s) 254, 311, 353
Fsp4HI GCNGC 4 cut(s) 106, 232, 657, 660
FspBI CTAG 1 cut(s) 312
GlaI GCGC 1 cut(s) 478
GluI GCNGC 4 cut(s) 106, 232, 657, 660
GsuI CTGGAG 2 cut(s) 395, 489
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 624
HgaI GACGC 1 cut(s) 324
HhaI GCGC 1 cut(s) 479
Hin1I GRCGYC 1 cut(s) 316
Hin1II CATG 5 cut(s) 262, 425, 524, 644, 828
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HinfI GANTC 4 cut(s) 52, 88, 139, 213
HpaII CCGG 1 cut(s) 624
HphI GGTGA 3 cut(s) 467, 638, 647
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 7 cut(s) 114, 130, 154, 167, 280, 487, 704
Hpy188III TCNNGA 6 cut(s) 26, 136, 196, 412, 506, 825
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 566
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 751
HpyCH4V TGCA 6 cut(s) 39, 161, 258, 305, 386, 421
HpyF3I CTNAG 2 cut(s) 227, 291
HpySE526I ACGT 1 cut(s) 751
Hsp92I GRCGYC 1 cut(s) 316
Hsp92II CATG 5 cut(s) 262, 425, 524, 644, 828
HspAI GCGC 1 cut(s) 477
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 6 cut(s) 4, 59, 176, 394, 546, 637
LmnI GCTCC 1 cut(s) 207
Lsp1109I GCAGC 3 cut(s) 243, 668, 671
LweI GCATC 1 cut(s) 373
MaeI CTAG 1 cut(s) 312
MaeII ACGT 1 cut(s) 751
MaeIII GTNAC 1 cut(s) 643
MalI GATC 6 cut(s) 6, 61, 178, 396, 548, 639
MboI GATC 6 cut(s) 4, 59, 176, 394, 546, 637
MboII GAAGA 3 cut(s) 293, 691, 805
MfeI CAATTG 1 cut(s) 463
MhlI GDGCHC 1 cut(s) 766
MluCI AATT 7 cut(s) 64, 199, 358, 463, 723, 734, 774
MlyI GAGTC 2 cut(s) 97, 222
MmeI TCCRAC 4 cut(s) 24, 92, 276, 348
MnlI CCTC 4 cut(s) 33, 198, 408, 741
MseI TTAA 2 cut(s) 540, 773
MslI CAYNNNNRTG 1 cut(s) 519
MspA1I CMGCKG 1 cut(s) 662
MspI CCGG 1 cut(s) 624
MspR9I CCNGG 1 cut(s) 329
MunI CAATTG 1 cut(s) 463
MvaI CCWGG 1 cut(s) 329
MvnI CGCG 2 cut(s) 105, 477
NdeII GATC 6 cut(s) 4, 59, 176, 394, 546, 637
NlaIII CATG 5 cut(s) 262, 425, 524, 644, 828
NlaIV GGNNCC 1 cut(s) 333
NspI RCATGY 2 cut(s) 425, 524
PagI TCATGA 1 cut(s) 824
PfeI GAWTC 2 cut(s) 52, 139
PflMI CCANNNNNTGG 1 cut(s) 752
PkrI GCNGC 4 cut(s) 107, 233, 658, 661
Ple19I CGATCG 1 cut(s) 179
PleI GAGTC 2 cut(s) 96, 221
PpsI GAGTC 2 cut(s) 96, 221
PshAI GACNNNNGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 662
PvuI CGATCG 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 662
RsaI GTAC 2 cut(s) 273, 593
RsaNI GTAC 2 cut(s) 272, 592
RseI CAYNNNNRTG 1 cut(s) 519
SaqAI TTAA 2 cut(s) 540, 773
SatI GCNGC 4 cut(s) 106, 232, 657, 660
Sau3AI GATC 6 cut(s) 4, 59, 176, 394, 546, 637
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 2 cut(s) 97, 222
ScrFI CCNGG 1 cut(s) 329
SduI GDGCHC 1 cut(s) 766
SetI ASST 8 cut(s) 148, 330, 337, 419, 450, 650, 664, 754
SfaNI GCATC 1 cut(s) 373
SinI GGWCC 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 519
Sse9I AATT 7 cut(s) 64, 199, 358, 463, 723, 734, 774
SsiI CCGC 3 cut(s) 105, 341, 526
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 1 cut(s) 754
TaqII GACCGA 1 cut(s) 169
TasI AATT 7 cut(s) 64, 199, 358, 463, 723, 734, 774
TatI WGTACW 2 cut(s) 271, 591
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 2 cut(s) 52, 139
Tru1I TTAA 2 cut(s) 540, 773
Tru9I TTAA 2 cut(s) 540, 773
TseI GCWGC 3 cut(s) 231, 656, 659
TspDTI ATGAA 4 cut(s) 453, 585, 602, 813
TspGWI ACGGA 1 cut(s) 367
Van91I CCANNNNNTGG 1 cut(s) 752
VpaK11BI GGWCC 1 cut(s) 181
XapI RAATTY 2 cut(s) 64, 358
XceI RCATGY 2 cut(s) 425, 524
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.