Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015677

Physical Location & Seq

Genomic Coordinates Reverse (-)

5316933 .. 5320632

Gene Structure 3700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00082510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGCGGAGCCGCCACCGCCACCGCCGACGATGAGTGAGAACCAGAATCAGAATCAGAATCCAAGCTCGGCGTCGCCGGCGACGCACATGACTGACGTGGATGTGGACGCCTTGGCTCACTGCACCAGCTACCTTAGCCTCCAGGACGTCTCCAACATGGCCATGACCTGCAAGTACCTCCAAAAAGTCGCCTACTCCGACTCTATCTGGCGCCGCTTCTTCAGGGAGAGTTGGCCGCAGCAAACACCTGCATTTGCTTCGCCAACTTCAGGAGTTAGGGAGGCGTATTTACGGCGGCGCACGGATTCGCTGCAATTCAAGTTTTCGGACCCGGTTGTTGCCGATTTCATCACAGATACGAAGCCTGTTGACCACATTTTATTGAATGAAAAGAATATAATCTTCTCTAAGGGTTCAGTGATACAAGTGATAAAGATTGATGACTGGTTATGTGGGAGGGATTCGGTTGTCACACTAAGTGATCACAGTGCAAGAATTACTTGTATGAGACTGTTTTCGCTTAATGAAACATCTTTATATCGAAGTGAAGCACAAAGGAAAGAGAATGTTTTGGTAACTTCAAGCTCCGACCATGGTATCCGGCTATGGTGGAAGGGTTCTTGCCGACGATGTTTTACAGGTCACAAAGGCTCAGTTACGGCCCTGTCTGATAAATTGTTAGGCAATGGCACTGGAAAAGTATTGGCAAGTGGAGGGGAAGATGGCACAGTTCGCCTTTGGTCTCTTACTTCCAGTGGAAGACGTGGTCAGCATGCTTTAAAGGCTACTTTCTATGGTCATGAGAAACCCATCAAATTGATGTCAGTTGCTGGGCATAAAACTTCTATTTTGGTAACTGTTACAGGAGATTCTAAGGTAAGGTTGTGGGATGCAGCTGCACGGTCTGCTGTTCCTTCTTCATCTTGTGTGGGAATGACTTCAATTCCTGGTCCCCTTATAAACATGAAGTGCCATGAACAATTGCTCTATCTTGCTGCCGGTTCCTCTGTTGCTGTAATCGATCTGAGGACAATGAGAAAAGTTCTCTCATATTCGATAGATGAAAAGCTATGTTCTTTTGATGCCATTCCTTCAAAATCCTTGTGCTGTGTTGGCAGCAGTAATGGCAGAGCGATGCTTTACGATATCAGGAGGGTCAAGCTCCCCAACTCGAAAGCAGAACCAGTAATCGAGTTGGATGGTGGACACATTGGGCCATTGACTCACTTGAACATGGATTCTTACAAAATAGTTACAGGAGGCCGAGGCAGGGGAGATTCTCATGTTAATATTTGGGAGTCCAACACTGGTGCACTCGTCAGTTCCCTGACTTGTGATCTGGAGGATGCAAGTATAGATGCCCTAGCTGTAAATGGGTGTCAAATTGTTACGGCCAACACCAGCCATATGGAAGATTCGGGAGTTCTACGCTATAGGGACTTCAGCAATGCTTCATGTCCTGCTGTTAATAGTGAAGGTGGCCATGTTTCAAAGTTTTGGAATCCACAATCTTATAGTGATAGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005737 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016604 GO:0016607 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0030914 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0033276 GO:0035770 GO:0036211 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0080090 GO:0090575 GO:0140110 GO:1901564 GO:1902493 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:1990904 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

F-box F-box-like WD40

Protein Analysis

509

Amino Acids

55.58

Weight (kDa)

8.13

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	40 - 75	2.4e-06	F-box-like
WD40_CDC20-Fz	PF24807	155 - 304	1.3e-09	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	166 - 432	1.2e-13	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	184 - 302	2.7e-12	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	184 - 252	8.2e-06	WDHD1 first WD40 domain
Beta-prop_TEP1_2nd	PF25047	187 - 300	4e-06	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	188 - 298	4.1e-07	WDR3 second beta-propeller domain
Beta-prop_SCAP	PF24017	191 - 299	6.1e-06	SCAP Beta-propeller
WD40	PF00400	206 - 248	8.3e-08	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	229 - 444	1.5e-19	THOC3 beta-propeller domain
WD40_Prp19	PF24814	232 - 388	7.4e-09	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015677)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g49170
malus_domestica	MD09G1047900.v1.1 MD17G1048000.v1.1 MD17G1048100.v1.1
prunus_persica	Prupe.3G271100_v2.0.a1
pyrus_communis	pycom17g04280
rosa_chinensis	RchiOBHm_Chr2g0169041
rosa_laevigata	RLG00000021826
rosa_multiflora	Rmu_ssc0000393.1_g000025
rosa_roxburghii	Rroxscaffold_2G00082510
rosa_rugosa	Rorug02G0536500
rosa_samantha	Rh2AG608000 Rh2BG620700 Rh2CG589600 Rh2DG631300
rosa_wichuraiana	Rw2G050420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	959
AarI	CACCTGC	1 cut(s)	256
AatII	GACGTC	1 cut(s)	150
Acc36I	ACCTGC	2 cut(s)	176, 256
AccB1I	GGYRCC	1 cut(s)	210
AciI	CCGC	7 cut(s)	5, 11, 17, 23, 214, 236, 295
AcoI	YGGCCR	4 cut(s)	159, 233, 1392, 1480
AcuI	CTGAAG	3 cut(s)	205, 252, 1426
AcyI	GRCGYC	4 cut(s)	71, 108, 147, 211
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	269, 1270
AgsI	TTSAA	7 cut(s)	319, 385, 582, 942, 1095, 1231, 1491
AjiI	CACGTC	2 cut(s)	97, 764
AjnI	CCWGG	2 cut(s)	141, 946
AluBI	AGCT	7 cut(s)	66, 129, 585, 896, 1069, 1162, 1367
AluI	AGCT	7 cut(s)	66, 129, 585, 896, 1069, 1162, 1367
Alw21I	GWGCWC	1 cut(s)	1315
Alw26I	GTCTC	3 cut(s)	154, 502, 747
Alw44I	GTGCAC	1 cut(s)	1311
AlwNI	CAGNNNCTG	1 cut(s)	830
AoxI	GGCC	7 cut(s)	159, 233, 660, 1214, 1261, 1392, 1480
ApaLI	GTGCAC	1 cut(s)	1311
ApeKI	GCWGC	6 cut(s)	238, 310, 893, 896, 995, 1116
Asp700I	GAANNNNTTC	1 cut(s)	937
AspLEI	GCGC	2 cut(s)	213, 300
AspS9I	GGNCC	4 cut(s)	328, 661, 950, 1214
AsuC2I	CCSGG	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	328, 950
BaeGI	GKGCMC	1 cut(s)	1315
BaeI	ACNNNNGTAYC	2 cut(s)	580, 613
BalI	TGGCCA	2 cut(s)	161, 1482
BanI	GGYRCC	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	766
Bbv12I	GWGCWC	1 cut(s)	1315
BbvI	GCAGC	6 cut(s)	250, 297, 883, 905, 982, 1128
BccI	CCATC	3 cut(s)	716, 818, 1193
BceAI	ACGGC	3 cut(s)	308, 675, 1407
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BciT130I	CCWGG	2 cut(s)	143, 948
BciVI	GTATCC	1 cut(s)	608
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	3 cut(s)	154, 502, 747
BfaI	CTAG	1 cut(s)	1364
BfmI	CTRYAG	1 cut(s)	1432
BfoI	RGCGCY	1 cut(s)	214
BfuAI	ACCTGC	2 cut(s)	176, 256
BfuI	GTATCC	1 cut(s)	608
Bme1390I	CCNGG	3 cut(s)	143, 332, 948
Bme18I	GGWCC	2 cut(s)	328, 950
BmgBI	CACGTC	2 cut(s)	97, 764
BmgT120I	GGNCC	4 cut(s)	328, 661, 950, 1214
BmiI	GGNNCC	5 cut(s)	9, 212, 330, 952, 1003
BmrFI	CCNGG	3 cut(s)	143, 332, 948
BmsI	GCATC	5 cut(s)	880, 1072, 1125, 1336, 1348
BpiI	GAAGAC	1 cut(s)	766
BpmI	CTGGAG	2 cut(s)	125, 1361
Bpu10I	CCTNAGC	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	332
Bsa29I	ATCGAT	1 cut(s)	1020
BsaHI	GRCGYC	4 cut(s)	71, 108, 147, 211
BsaI	GGTCTC	1 cut(s)	747
BsaJI	CCNNGG	3 cut(s)	111, 592, 1264
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 1270
Bse118I	RCCGGY	2 cut(s)	76, 998
Bse1I	ACTGG	5 cut(s)	449, 697, 753, 1184, 1312
Bse3DI	GCAATG	2 cut(s)	691, 1453
BseBI	CCWGG	2 cut(s)	143, 948
BseCI	ATCGAT	1 cut(s)	1020
BseDI	CCNNGG	3 cut(s)	111, 592, 1264
BseGI	GGATG	4 cut(s)	106, 895, 1204, 1351
BseLI	CCNNNNNNNGG	2 cut(s)	269, 1270
BseMI	GCAATG	2 cut(s)	691, 1453
BseMII	CTCAG	2 cut(s)	666, 1016
BseNI	ACTGG	5 cut(s)	449, 697, 753, 1184, 1312
BseSI	GKGCMC	1 cut(s)	1315
BseXI	GCAGC	6 cut(s)	250, 297, 883, 905, 982, 1128
BseYI	CCCAGC	1 cut(s)	830
BsgI	GTGCAG	2 cut(s)	106, 882
BshFI	GGCC	7 cut(s)	161, 235, 662, 1216, 1263, 1394, 1482
BshNI	GGYRCC	1 cut(s)	210
BshVI	ATCGAT	1 cut(s)	1020
BsiHKAI	GWGCWC	1 cut(s)	1315
BsiSI	CCGG	4 cut(s)	77, 332, 601, 999
BslFI	GGGAC	2 cut(s)	936, 1451
BslI	CCNNNNNNNGG	2 cut(s)	269, 1270
BsmAI	GTCTC	3 cut(s)	154, 502, 747
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	2 cut(s)	936, 1451
BsnI	GGCC	7 cut(s)	161, 235, 662, 1216, 1263, 1394, 1482
Bso31I	GGTCTC	1 cut(s)	747
Bsp1286I	GDGCHC	1 cut(s)	1315
Bsp143I	GATC	3 cut(s)	481, 1021, 1336
Bsp19I	CCATGG	1 cut(s)	592
BspACI	CCGC	7 cut(s)	5, 11, 17, 23, 214, 236, 295
BspANI	GGCC	7 cut(s)	161, 235, 662, 1216, 1263, 1394, 1482
BspCNI	CTCAG	2 cut(s)	665, 1017
BspDI	ATCGAT	1 cut(s)	1020
BspHI	TCATGA	1 cut(s)	799
BspLI	GGNNCC	5 cut(s)	9, 212, 330, 952, 1003
BspMI	ACCTGC	2 cut(s)	176, 256
BspT107I	GGYRCC	1 cut(s)	210
BspTNI	GGTCTC	1 cut(s)	747
BsrDI	GCAATG	2 cut(s)	691, 1453
BsrFI	RCCGGY	2 cut(s)	76, 998
BsrI	ACTGG	5 cut(s)	449, 697, 753, 1184, 1312
BssAI	RCCGGY	2 cut(s)	76, 998
BssECI	CCNNGG	3 cut(s)	111, 592, 1264
BssMI	GATC	3 cut(s)	481, 1021, 1336
BssNI	GRCGYC	4 cut(s)	71, 108, 147, 211
BssT1I	CCWWGG	2 cut(s)	111, 592
Bst2UI	CCWGG	2 cut(s)	143, 948
Bst4CI	ACNGT	5 cut(s)	488, 513, 730, 859, 903
BstACI	GRCGYC	4 cut(s)	71, 108, 147, 211
BstAPI	GCANNNNNTGC	1 cut(s)	905
BstC8I	GCNNGC	2 cut(s)	78, 774
BstDEI	CTNAG	6 cut(s)	134, 408, 476, 652, 873, 1025
BstDSI	CCRYGG	1 cut(s)	592
BstF5I	GGATG	4 cut(s)	106, 895, 1204, 1351
BstH2I	RGCGCY	1 cut(s)	214
BstHHI	GCGC	2 cut(s)	213, 300
BstKTI	GATC	3 cut(s)	484, 1024, 1339
BstMAI	GTCTC	3 cut(s)	154, 502, 747
BstMBI	GATC	3 cut(s)	481, 1021, 1336
BstMWI	GCNNNNNNNGC	9 cut(s)	16, 77, 82, 135, 732, 782, 905, 1113, 1125
BstNI	CCWGG	2 cut(s)	143, 948
BstNSI	RCATGY	1 cut(s)	776
BstSCI	CCNGG	3 cut(s)	141, 330, 946
BstSFI	CTRYAG	1 cut(s)	1432
BstSLI	GKGCMC	1 cut(s)	1315
BstV1I	GCAGC	6 cut(s)	250, 297, 883, 905, 982, 1128
BstV2I	GAAGAC	1 cut(s)	766
BstXI	CCANNNNNNTGG	1 cut(s)	1408
Bsu15I	ATCGAT	1 cut(s)	1020
BsuI	GTATCC	1 cut(s)	608
BsuRI	GGCC	7 cut(s)	161, 235, 662, 1216, 1263, 1394, 1482
BsuTUI	ATCGAT	1 cut(s)	1020
BtgI	CCRYGG	1 cut(s)	592
BtgZI	GCGATG	1 cut(s)	1148
BtrI	CACGTC	2 cut(s)	97, 764
BtsCI	GGATG	4 cut(s)	106, 895, 1204, 1351
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	6 cut(s)	118, 423, 493, 690, 760, 1305
BveI	ACCTGC	2 cut(s)	176, 256
Cac8I	GCNNGC	2 cut(s)	78, 774
CaiI	CAGNNNCTG	1 cut(s)	830
CciI	TCATGA	1 cut(s)	799
CfoI	GCGC	2 cut(s)	213, 300
Cfr10I	RCCGGY	2 cut(s)	76, 998
Cfr13I	GGNCC	4 cut(s)	328, 661, 950, 1214
ClaI	ATCGAT	1 cut(s)	1020
CseI	GACGC	3 cut(s)	60, 91, 116
Csp6I	GTAC	1 cut(s)	175
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	6 cut(s)	134, 408, 476, 652, 873, 1025
DinI	GGCGCC	1 cut(s)	212
DpnI	GATC	3 cut(s)	483, 1023, 1338
DpnII	GATC	3 cut(s)	481, 1021, 1336
DraI	TTTAAA	1 cut(s)	780
DraIII	CACNNNGTG	1 cut(s)	479
EaeI	YGGCCR	4 cut(s)	159, 233, 1392, 1480
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	111, 592
Eco31I	GGTCTC	1 cut(s)	747
Eco32I	GATATC	1 cut(s)	1147
Eco47I	GGWCC	2 cut(s)	328, 950
Eco57I	CTGAAG	3 cut(s)	205, 252, 1426
EcoRII	CCWGG	2 cut(s)	141, 946
EcoRV	GATATC	1 cut(s)	1147
EcoT14I	CCWWGG	2 cut(s)	111, 592
EgeI	GGCGCC	1 cut(s)	212
EheI	GGCGCC	1 cut(s)	212
ErhI	CCWWGG	2 cut(s)	111, 592
Esp3I	CGTCTC	1 cut(s)	154
FalI	AAGNNNNNCTT	2 cut(s)	484, 516
FaqI	GGGAC	2 cut(s)	936, 1451
FauNDI	CATATG	1 cut(s)	1407
FbaI	TGATCA	1 cut(s)	481
FokI	GGATG	4 cut(s)	113, 902, 1211, 1358
FspBI	CTAG	1 cut(s)	1364
GlaI	GCGC	2 cut(s)	212, 299
GsaI	CCCAGC	1 cut(s)	834
GsuI	CTGGAG	2 cut(s)	125, 1361
HaeII	RGCGCY	1 cut(s)	214
HaeIII	GGCC	7 cut(s)	161, 235, 662, 1216, 1263, 1394, 1482
HapII	CCGG	4 cut(s)	77, 332, 601, 999
HgaI	GACGC	3 cut(s)	60, 91, 116
HhaI	GCGC	2 cut(s)	213, 300
Hin1I	GRCGYC	4 cut(s)	71, 108, 147, 211
Hin6I	GCGC	2 cut(s)	211, 298
HinP1I	GCGC	2 cut(s)	211, 298
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HpaII	CCGG	4 cut(s)	77, 332, 601, 999
Hpy166II	GTNNAC	4 cut(s)	106, 370, 1205, 1313
Hpy188I	TCNGA	7 cut(s)	51, 57, 199, 328, 589, 670, 1026
Hpy188III	TCNNGA	5 cut(s)	270, 800, 1150, 1340, 1419
Hpy8I	GTNNAC	4 cut(s)	106, 370, 1205, 1313
Hpy99I	CGWCG	4 cut(s)	31, 76, 85, 630
HpyAV	CCTTC	4 cut(s)	607, 924, 1101, 1469
HpyCH4III	ACNGT	5 cut(s)	488, 513, 730, 859, 903
HpyCH4IV	ACGT	3 cut(s)	96, 147, 763
HpyCH4V	TGCA	9 cut(s)	123, 171, 251, 313, 491, 893, 899, 1313, 1349
HpyF10VI	GCNNNNNNNGC	9 cut(s)	16, 77, 82, 135, 732, 782, 905, 1113, 1125
HpyF3I	CTNAG	6 cut(s)	134, 408, 476, 652, 873, 1025
HpySE526I	ACGT	3 cut(s)	96, 147, 763
Hsp92I	GRCGYC	4 cut(s)	71, 108, 147, 211
HspAI	GCGC	2 cut(s)	211, 298
KasI	GGCGCC	1 cut(s)	210
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	3 cut(s)	481, 1021, 1336
LmnI	GCTCC	3 cut(s)	7, 590, 1167
Lsp1109I	GCAGC	6 cut(s)	250, 297, 883, 905, 982, 1128
LweI	GCATC	5 cut(s)	880, 1072, 1125, 1336, 1348
MaeI	CTAG	1 cut(s)	1364
MaeII	ACGT	3 cut(s)	96, 147, 763
MaeIII	GTNAC	8 cut(s)	469, 574, 641, 655, 853, 859, 1252, 1387
MalI	GATC	3 cut(s)	483, 1023, 1338
MboI	GATC	3 cut(s)	481, 1021, 1336
MboII	GAAGA	6 cut(s)	211, 394, 731, 771, 909, 1424
MfeI	CAATTG	1 cut(s)	980
MhlI	GDGCHC	1 cut(s)	1315
MlsI	TGGCCA	2 cut(s)	161, 1482
MluCI	AATT	7 cut(s)	314, 495, 674, 815, 942, 980, 1383
MluNI	TGGCCA	2 cut(s)	161, 1482
Mly113I	GGCGCC	1 cut(s)	211
MlyI	GAGTC	3 cut(s)	194, 1216, 1307
MmeI	TCCRAC	5 cut(s)	177, 222, 612, 1176, 1326
Mox20I	TGGCCA	2 cut(s)	161, 1482
MreI	CGCCGGCG	1 cut(s)	76
MroNI	GCCGGC	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	937
MscI	TGGCCA	2 cut(s)	161, 1482
MseI	TTAA	4 cut(s)	522, 779, 1287, 1467
MslI	CAYNNNNRTG	1 cut(s)	161
Msp20I	TGGCCA	2 cut(s)	161, 1482
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	4 cut(s)	77, 332, 601, 999
MspR9I	CCNGG	3 cut(s)	143, 332, 948
MunI	CAATTG	1 cut(s)	980
MvaI	CCWGG	2 cut(s)	143, 948
MwoI	GCNNNNNNNGC	9 cut(s)	16, 77, 82, 135, 732, 782, 905, 1113, 1125
NaeI	GCCGGC	1 cut(s)	78
NarI	GGCGCC	1 cut(s)	211
NciI	CCSGG	1 cut(s)	332
NcoI	CCATGG	1 cut(s)	592
NdeI	CATATG	1 cut(s)	1407
NdeII	GATC	3 cut(s)	481, 1021, 1336
NgoMIV	GCCGGC	1 cut(s)	76
NlaIV	GGNNCC	5 cut(s)	9, 212, 330, 952, 1003
NmeAIII	GCCGAG	2 cut(s)	47, 1289
NmuCI	GTSAC	2 cut(s)	469, 641
NspI	RCATGY	1 cut(s)	776
PaeI	GCATGC	1 cut(s)	776
PagI	TCATGA	1 cut(s)	799
PaqCI	CACCTGC	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	937
PflFI	GACNNNGTC	1 cut(s)	765
PfoI	TCCNGGA	1 cut(s)	141
PleI	GAGTC	3 cut(s)	194, 1216, 1306
PluTI	GGCGCC	1 cut(s)	214
PpsI	GAGTC	3 cut(s)	194, 1216, 1306
PsiI	TTATAA	1 cut(s)	959
Psp6I	CCWGG	2 cut(s)	141, 946
PspFI	CCCAGC	1 cut(s)	830
PspGI	CCWGG	2 cut(s)	141, 946
PspN4I	GGNNCC	5 cut(s)	9, 212, 330, 952, 1003
PspPI	GGNCC	4 cut(s)	328, 661, 950, 1214
PstNI	CAGNNNCTG	1 cut(s)	830
PsyI	GACNNNGTC	1 cut(s)	765
PvuII	CAGCTG	1 cut(s)	896
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	4 cut(s)	522, 779, 1287, 1467
Sau3AI	GATC	3 cut(s)	481, 1021, 1336
Sau96I	GGNCC	4 cut(s)	328, 661, 950, 1214
SchI	GAGTC	3 cut(s)	194, 1216, 1307
ScrFI	CCNGG	3 cut(s)	143, 332, 948
SduI	GDGCHC	1 cut(s)	1315
SfaNI	GCATC	5 cut(s)	880, 1072, 1125, 1336, 1348
SfcI	CTRYAG	1 cut(s)	1432
SfoI	GGCGCC	1 cut(s)	212
SgrAI	CRCCGGYG	1 cut(s)	76
SinI	GGWCC	2 cut(s)	328, 950
SmiMI	CAYNNNNRTG	1 cut(s)	161
SphI	GCATGC	1 cut(s)	776
Sse9I	AATT	7 cut(s)	314, 495, 674, 815, 942, 980, 1383
SsiI	CCGC	7 cut(s)	5, 11, 17, 23, 214, 236, 295
SspDI	GGCGCC	1 cut(s)	210
SspI	AATATT	1 cut(s)	1291
SspMI	CTAG	1 cut(s)	1364
StyD4I	CCNGG	3 cut(s)	141, 330, 946
StyI	CCWWGG	2 cut(s)	111, 592
TaaI	ACNGT	5 cut(s)	488, 513, 730, 859, 903
TaiI	ACGT	3 cut(s)	99, 150, 766
TaqI	TCGA	5 cut(s)	541, 1020, 1055, 1172, 1191
TasI	AATT	7 cut(s)	314, 495, 674, 815, 942, 980, 1383
TauI	GCSGC	4 cut(s)	13, 216, 238, 298
Tru1I	TTAA	4 cut(s)	522, 779, 1287, 1467
Tru9I	TTAA	4 cut(s)	522, 779, 1287, 1467
TscAI	CASTG	6 cut(s)	125, 423, 493, 697, 760, 1312
TseFI	GTSAC	2 cut(s)	469, 641
TseI	GCWGC	6 cut(s)	238, 310, 893, 896, 995, 1116
Tsp45I	GTSAC	2 cut(s)	469, 641
TspDTI	ATGAA	8 cut(s)	337, 402, 540, 909, 980, 990, 1077, 1443
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	6 cut(s)	125, 423, 493, 697, 760, 1312
Tth111I	GACNNNGTC	1 cut(s)	765
VneI	GTGCAC	1 cut(s)	1311
VpaK11BI	GGWCC	2 cut(s)	328, 950
XceI	RCATGY	1 cut(s)	776
XmnI	GAANNNNTTC	1 cut(s)	937
XspI	CTAG	1 cut(s)	1364
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.