Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0015677

Physical Location & Seq

Genomic Coordinates Forward (+)

83542859 .. 83549864

Gene Structure 7006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG608000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1818 bp

ATGACAAGTAATTATAGCCCGTACAGTCGCATCATTTTTACGTGTTACCTTTCCCTTCCAAAACTGGTTTCTATTCTCTCACTGTTTACTGTTGCGAGCGAAATCATAGTTTCGTATCTGATATTTCCAATGGCGGAGCCATCACCACCGGCACCGGCACCGCCGACGATGAGTGAGAACCAGAATCAGAATCAGAATCCAAGCTCGGCGTGGCCGGCGATGCACATGACTGACGTGGATGTGGACGCCTTGGCTTACTGCACCAGCTACCTTAGCCTCCAGGACGTCTCCAACATGGCCATGGCCTGCAAGTACCTCCGAAAAGTCGCCTACTCCGACTCTATCTGGCGCCGCTTCTTCAGGGAGAGTTGGCCGCAGCAAACACCTGCATTTGCTTCGCCAACTTCAGGAGTTAGGGAAGCGTATTTACGGCGGCGCACGGATTTGCTGCAATTCAAATTTTCGGACCCGGTTGTTGCCGATTTCATCACAGATACAAAGCCTGTTGACCACATTTTATTGAATGAAAAGCATATAATCTTCTCTAAGGGTTCAGTGATAAAAGTGATAAAGATTGATGACTGGTTAAGTGGTAGGGATTCGGTTGTCACACTCAGTGATCACAGCGCAAGAATTACTTGTATGAGACTGTTTTCGCTTAATGAAACATCTTTATATCGAAGTGAAGCACAAAGGAAAGAGAATGTTTTGGTAACTTCAAGCTCCGATCATGGTATCCGGCTATGGTGGAAGGGTGCTTGCCGACGATGTTTTACAGGTCACAAAGGCTCAGTTACGGCCCTGTCTGATAAATTGTTAGGCAATGGCACTGGAAAAGTATTGGCAAGTGGAGGGGAAGATGGCACAGTTCGCCTTTGGTCTCTTACTTCCAGTGGAAGACGTGGTCAGCATGCTTTAAAGGCTACTTTCTATGGTCATGAGAAACCCATCAAATTGATGTCAGTTGCTGGGCATAAAACTTCTATTTTGGTAACTGTTACAGGAGATTCTAAGGTAAGGTTGTGGGATGCAGCTGCACAGTCTGCTGTTCCTTCTTCATCTTGTGTGGGAATGACTTCAATTCCTGGTCCCCTTATAAACATGAAGTGCCATGAACAATTGCTCTATCTTGCTGCCGGTTCCTCTGTTGCTGTAATCGATCTGAGGACAATGAGAAAAGTTCTCCCATATTCGATAGATGAAAAGCTATGTTCTTTTGATGCCATTCCTTCAAAATCCTTGTGCTGTGTTGGCAGCAGTAATGGCAGAGCGATGCTTTACGATATCAGGAGGGTCAAGCTCCCCAACTCGAAAGCAGAACCAGTAACCGAGTTGGATGGTGGACACATTGGGCCATTGACTCACTTGAACATGGATTCATACAAAATAGTTACAGGAGGCCGAGGCAGGGGAGATTCTCATGTTAATATTTGGGAGTCCAACACTGGTGCACTCGTCAGTTCCCTGACTTGTGATCTGGAGGAAGCAAGTATGGATGCCCTAGCTGTAAATGGGTGTCAAATTGTTACTGCCAACACCAGCCATATGGAAGATTCGGGAGTTCTACGCTATAGGGACTTCAGCAATGCTTCATGTCCTGCTGTTAATAGTGAAGGAAAAACGAAGCTTCGGAGGAGCCTCGGAGCTCTTCAACTCGTCTCCGAGTGTGACCAGAGCCGTCTATCTCGACGACAAGGACGAGCTCGTGGCTCAGATGAAGTGGCTCGCCGGCGACTCGCTGAACCGAGAGACGGCGTCGAAGCTCCTCCAACTCGGGACGATTCCTCTAGTGAACGAGTTGGACGACTCAGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005737 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016604 GO:0016607 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0030914 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0033276 GO:0035770 GO:0036211 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0080090 GO:0090575 GO:0140110 GO:1901564 GO:1902493 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:1990904 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

F-box F-box-like WD40

Protein Analysis

605

Amino Acids

66.48

Weight (kDa)

8.97

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	200 - 350	1.3e-09	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	212 - 431	1.8e-12	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	230 - 350	1.3e-12	WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	233 - 347	5.9e-06	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	234 - 344	5.5e-07	WDR3 second beta-propeller domain
Beta-prop_SCAP	PF24017	237 - 345	1e-05	SCAP Beta-propeller
WD40	PF00400	253 - 294	1.7e-07	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	275 - 490	3.6e-19	THOC3 beta-propeller domain
WD40_Prp19	PF24814	278 - 478	2.8e-09	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015677)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g49170
malus_domestica	MD09G1047900.v1.1 MD17G1048000.v1.1 MD17G1048100.v1.1
prunus_persica	Prupe.3G271100_v2.0.a1
pyrus_communis	pycom17g04280
rosa_chinensis	RchiOBHm_Chr2g0169041
rosa_laevigata	RLG00000021826
rosa_multiflora	Rmu_ssc0000393.1_g000025
rosa_roxburghii	Rroxscaffold_2G00082510
rosa_rugosa	Rorug02G0536500
rosa_samantha	Rh2AG608000 Rh2BG620700 Rh2CG589600 Rh2DG631300
rosa_wichuraiana	Rw2G050420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1097
AarI	CACCTGC	1 cut(s)	394
AatII	GACGTC	1 cut(s)	288
Acc36I	ACCTGC	1 cut(s)	394
AccB1I	GGYRCC	3 cut(s)	151, 157, 348
AciI	CCGC	5 cut(s)	134, 161, 352, 374, 433
AcoI	YGGCCR	3 cut(s)	212, 297, 371
AcsI	RAATTY	1 cut(s)	458
AcuI	CTGAAG	3 cut(s)	343, 390, 1564
AcyI	GRCGYC	4 cut(s)	246, 285, 349, 1755
AdeI	CACNNNGTG	1 cut(s)	617
AfaI	GTAC	2 cut(s)	23, 314
AfiI	CCNNNNNNNGG	3 cut(s)	407, 1408, 1751
AflIII	ACRYGT	1 cut(s)	41
AgsI	TTSAA	7 cut(s)	457, 523, 720, 1080, 1233, 1369, 1652
AjiI	CACGTC	2 cut(s)	235, 902
AjnI	CCWGG	2 cut(s)	279, 1084
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
Alw21I	GWGCWC	3 cut(s)	1453, 1648, 1705
Alw26I	GTCTC	5 cut(s)	292, 640, 885, 1663, 1743
Alw44I	GTGCAC	1 cut(s)	1449
AlwNI	CAGNNNCTG	1 cut(s)	968
Ama87I	CYCGRG	1 cut(s)	1773
AoxI	GGCC	7 cut(s)	212, 297, 303, 371, 798, 1352, 1399
ApaLI	GTGCAC	1 cut(s)	1449
ApeKI	GCWGC	6 cut(s)	376, 448, 1031, 1034, 1133, 1254
ApoI	RAATTY	1 cut(s)	458
Asp700I	GAANNNNTTC	1 cut(s)	1075
AspLEI	GCGC	3 cut(s)	351, 438, 629
AspS9I	GGNCC	4 cut(s)	466, 799, 1088, 1352
AsuC2I	CCSGG	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	135
AvaI	CYCGRG	1 cut(s)	1773
AvaII	GGWCC	2 cut(s)	466, 1088
BaeGI	GKGCMC	1 cut(s)	1453
BalI	TGGCCA	1 cut(s)	299
BanI	GGYRCC	3 cut(s)	151, 157, 348
BanII	GRGCYC	2 cut(s)	1648, 1705
BarI	GAAGNNNNNNTAC	2 cut(s)	411, 443
BauI	CACGAG	1 cut(s)	1704
BbsI	GAAGAC	1 cut(s)	904
Bbv12I	GWGCWC	3 cut(s)	1453, 1648, 1705
BbvI	GCAGC	6 cut(s)	388, 435, 1021, 1043, 1120, 1266
BccI	CCATC	4 cut(s)	148, 854, 956, 1331
BceAI	ACGGC	4 cut(s)	446, 813, 1662, 1768
BcgI	CGANNNNNNTGC	2 cut(s)	378, 412
BciT130I	CCWGG	2 cut(s)	281, 1086
BciVI	GTATCC	1 cut(s)	746
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	5 cut(s)	292, 640, 885, 1663, 1743
BfaI	CTAG	2 cut(s)	1502, 1788
BfmI	CTRYAG	1 cut(s)	1570
BfoI	RGCGCY	1 cut(s)	352
BfuAI	ACCTGC	1 cut(s)	394
BfuI	GTATCC	1 cut(s)	746
BisI	GCNGC	9 cut(s)	352, 374, 377, 434, 449, 1032, 1035, 1134, 1255
BlsI	GCNGC	9 cut(s)	353, 375, 378, 435, 450, 1033, 1036, 1135, 1256
Bme1390I	CCNGG	3 cut(s)	281, 470, 1086
Bme18I	GGWCC	2 cut(s)	466, 1088
BmeT110I	CYCGRG	1 cut(s)	1773
BmgBI	CACGTC	2 cut(s)	235, 902
BmgT120I	GGNCC	4 cut(s)	466, 799, 1088, 1352
BmiI	GGNNCC	8 cut(s)	138, 153, 159, 350, 468, 1090, 1141, 1637
BmrFI	CCNGG	3 cut(s)	281, 470, 1086
BmsI	GCATC	6 cut(s)	39, 210, 1018, 1210, 1263, 1486
BpiI	GAAGAC	1 cut(s)	904
BpmI	CTGGAG	2 cut(s)	263, 1499
Bpu10I	CCTNAGC	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	470
Bsa29I	ATCGAT	1 cut(s)	1158
BsaAI	YACGTR	1 cut(s)	42
BsaHI	GRCGYC	4 cut(s)	246, 285, 349, 1755
BsaI	GGTCTC	1 cut(s)	885
BsaJI	CCNNGG	4 cut(s)	249, 300, 1402, 1639
Bsc4I	CCNNNNNNNGG	3 cut(s)	407, 1408, 1751
Bse118I	RCCGGY	5 cut(s)	148, 154, 214, 1136, 1728
Bse1I	ACTGG	6 cut(s)	69, 587, 835, 891, 1322, 1450
Bse3DI	GCAATG	2 cut(s)	829, 1591
BseBI	CCWGG	2 cut(s)	281, 1086
BseCI	ATCGAT	1 cut(s)	1158
BseDI	CCNNGG	4 cut(s)	249, 300, 1402, 1639
BseGI	GGATG	4 cut(s)	244, 1033, 1342, 1501
BseLI	CCNNNNNNNGG	3 cut(s)	407, 1408, 1751
BseMI	GCAATG	2 cut(s)	829, 1591
BseMII	CTCAG	4 cut(s)	628, 804, 1154, 1725
BseNI	ACTGG	6 cut(s)	69, 587, 835, 891, 1322, 1450
BseRI	GAGGAG	2 cut(s)	1648, 1755
BseSI	GKGCMC	1 cut(s)	1453
BseXI	GCAGC	6 cut(s)	388, 435, 1021, 1043, 1120, 1266
BseYI	CCCAGC	1 cut(s)	968
BsgI	GTGCAG	2 cut(s)	244, 1020
BshFI	GGCC	7 cut(s)	214, 299, 305, 373, 800, 1354, 1401
BshNI	GGYRCC	3 cut(s)	151, 157, 348
BshVI	ATCGAT	1 cut(s)	1158
BsiHKAI	GWGCWC	3 cut(s)	1453, 1648, 1705
BsiHKCI	CYCGRG	1 cut(s)	1773
BsiSI	CCGG	7 cut(s)	149, 155, 215, 470, 739, 1137, 1729
BslFI	GGGAC	3 cut(s)	1074, 1589, 1790
BslI	CCNNNNNNNGG	3 cut(s)	407, 1408, 1751
BsmAI	GTCTC	5 cut(s)	292, 640, 885, 1663, 1743
BsmBI	CGTCTC	3 cut(s)	292, 1663, 1743
BsmFI	GGGAC	3 cut(s)	1074, 1589, 1790
BsnI	GGCC	7 cut(s)	214, 299, 305, 373, 800, 1354, 1401
Bso31I	GGTCTC	1 cut(s)	885
BsoBI	CYCGRG	1 cut(s)	1773
Bsp1286I	GDGCHC	3 cut(s)	1453, 1648, 1705
Bsp143I	GATC	4 cut(s)	619, 727, 1159, 1474
Bsp19I	CCATGG	1 cut(s)	300
BspACI	CCGC	5 cut(s)	134, 161, 352, 374, 433
BspANI	GGCC	7 cut(s)	214, 299, 305, 373, 800, 1354, 1401
BspCNI	CTCAG	4 cut(s)	627, 803, 1155, 1724
BspDI	ATCGAT	1 cut(s)	1158
BspHI	TCATGA	1 cut(s)	937
BspLI	GGNNCC	8 cut(s)	138, 153, 159, 350, 468, 1090, 1141, 1637
BspMI	ACCTGC	1 cut(s)	394
BspQI	GCTCTTC	1 cut(s)	1653
BspT107I	GGYRCC	3 cut(s)	151, 157, 348
BspTNI	GGTCTC	1 cut(s)	885
BsrDI	GCAATG	2 cut(s)	829, 1591
BsrFI	RCCGGY	5 cut(s)	148, 154, 214, 1136, 1728
BsrI	ACTGG	6 cut(s)	69, 587, 835, 891, 1322, 1450
BssAI	RCCGGY	5 cut(s)	148, 154, 214, 1136, 1728
BssECI	CCNNGG	4 cut(s)	249, 300, 1402, 1639
BssMI	GATC	4 cut(s)	619, 727, 1159, 1474
BssNI	GRCGYC	4 cut(s)	246, 285, 349, 1755
BssSI	CACGAG	1 cut(s)	1704
BssT1I	CCWWGG	2 cut(s)	249, 300
Bst2BI	CACGAG	1 cut(s)	1704
Bst2UI	CCWGG	2 cut(s)	281, 1086
Bst4CI	ACNGT	7 cut(s)	26, 84, 91, 651, 868, 997, 1041
Bst6I	CTCTTC	1 cut(s)	1653
BstACI	GRCGYC	4 cut(s)	246, 285, 349, 1755
BstAPI	GCANNNNNTGC	1 cut(s)	1043
BstBAI	YACGTR	1 cut(s)	42
BstC8I	GCNNGC	7 cut(s)	97, 216, 307, 760, 912, 1726, 1730
BstDEI	CTNAG	8 cut(s)	272, 546, 614, 790, 1011, 1163, 1711, 1808
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	4 cut(s)	244, 1033, 1342, 1501
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	3 cut(s)	351, 438, 629
BstKTI	GATC	4 cut(s)	622, 730, 1162, 1477
BstMAI	GTCTC	5 cut(s)	292, 640, 885, 1663, 1743
BstMBI	GATC	4 cut(s)	619, 727, 1159, 1474
BstMWI	GCNNNNNNNGC	8 cut(s)	215, 220, 273, 870, 920, 1043, 1251, 1263
BstNI	CCWGG	2 cut(s)	281, 1086
BstNSI	RCATGY	1 cut(s)	914
BstSCI	CCNGG	3 cut(s)	279, 468, 1084
BstSFI	CTRYAG	1 cut(s)	1570
BstSLI	GKGCMC	1 cut(s)	1453
BstV1I	GCAGC	6 cut(s)	388, 435, 1021, 1043, 1120, 1266
BstV2I	GAAGAC	1 cut(s)	904
BstXI	CCANNNNNNTGG	1 cut(s)	1546
Bsu15I	ATCGAT	1 cut(s)	1158
BsuI	GTATCC	1 cut(s)	746
BsuRI	GGCC	7 cut(s)	214, 299, 305, 373, 800, 1354, 1401
BsuTUI	ATCGAT	1 cut(s)	1158
BtgI	CCRYGG	1 cut(s)	300
BtgZI	GCGATG	2 cut(s)	233, 1286
BtrI	CACGTC	2 cut(s)	235, 902
BtsCI	GGATG	4 cut(s)	244, 1033, 1342, 1501
BtsIMutI	CAGTG	6 cut(s)	80, 561, 622, 828, 898, 1443
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	7 cut(s)	97, 216, 307, 760, 912, 1726, 1730
CaiI	CAGNNNCTG	1 cut(s)	968
CciI	TCATGA	1 cut(s)	937
CfoI	GCGC	3 cut(s)	351, 438, 629
Cfr10I	RCCGGY	5 cut(s)	148, 154, 214, 1136, 1728
Cfr13I	GGNCC	4 cut(s)	466, 799, 1088, 1352
ClaI	ATCGAT	1 cut(s)	1158
CseI	GACGC	2 cut(s)	254, 1744
Csp6I	GTAC	2 cut(s)	22, 313
CviQI	GTAC	2 cut(s)	22, 313
DdeI	CTNAG	8 cut(s)	272, 546, 614, 790, 1011, 1163, 1711, 1808
DinI	GGCGCC	1 cut(s)	350
DpnI	GATC	4 cut(s)	621, 729, 1161, 1476
DpnII	GATC	4 cut(s)	619, 727, 1159, 1474
DraI	TTTAAA	1 cut(s)	918
DraIII	CACNNNGTG	1 cut(s)	617
EaeI	YGGCCR	3 cut(s)	212, 297, 371
Eam1104I	CTCTTC	1 cut(s)	1653
EarI	CTCTTC	1 cut(s)	1653
EciI	GGCGGA	1 cut(s)	149
Ecl136II	GAGCTC	2 cut(s)	1646, 1703
Eco130I	CCWWGG	2 cut(s)	249, 300
Eco24I	GRGCYC	2 cut(s)	1648, 1705
Eco31I	GGTCTC	1 cut(s)	885
Eco32I	GATATC	1 cut(s)	1285
Eco47I	GGWCC	2 cut(s)	466, 1088
Eco53kI	GAGCTC	2 cut(s)	1646, 1703
Eco57I	CTGAAG	3 cut(s)	343, 390, 1564
Eco88I	CYCGRG	1 cut(s)	1773
EcoICRI	GAGCTC	2 cut(s)	1646, 1703
EcoRII	CCWGG	2 cut(s)	279, 1084
EcoRV	GATATC	1 cut(s)	1285
EcoT14I	CCWWGG	2 cut(s)	249, 300
EcoT38I	GRGCYC	2 cut(s)	1648, 1705
EgeI	GGCGCC	1 cut(s)	350
EheI	GGCGCC	1 cut(s)	350
ErhI	CCWWGG	2 cut(s)	249, 300
Esp3I	CGTCTC	3 cut(s)	292, 1663, 1743
FalI	AAGNNNNNCTT	2 cut(s)	622, 654
FaqI	GGGAC	3 cut(s)	1074, 1589, 1790
FauNDI	CATATG	1 cut(s)	1545
FbaI	TGATCA	1 cut(s)	619
Fnu4HI	GCNGC	9 cut(s)	352, 374, 377, 434, 449, 1032, 1035, 1134, 1255
FokI	GGATG	4 cut(s)	251, 1040, 1349, 1508
FriOI	GRGCYC	2 cut(s)	1648, 1705
Fsp4HI	GCNGC	9 cut(s)	352, 374, 377, 434, 449, 1032, 1035, 1134, 1255
FspBI	CTAG	2 cut(s)	1502, 1788
GlaI	GCGC	3 cut(s)	350, 437, 628
GluI	GCNGC	9 cut(s)	352, 374, 377, 434, 449, 1032, 1035, 1134, 1255
GsaI	CCCAGC	1 cut(s)	972
GsuI	CTGGAG	2 cut(s)	263, 1499
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	7 cut(s)	214, 299, 305, 373, 800, 1354, 1401
HapII	CCGG	7 cut(s)	149, 155, 215, 470, 739, 1137, 1729
HgaI	GACGC	2 cut(s)	254, 1744
HhaI	GCGC	3 cut(s)	351, 438, 629
Hin1I	GRCGYC	4 cut(s)	246, 285, 349, 1755
Hin6I	GCGC	3 cut(s)	349, 436, 627
HinP1I	GCGC	3 cut(s)	349, 436, 627
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	1625
HpaII	CCGG	7 cut(s)	149, 155, 215, 470, 739, 1137, 1729
HphI	GGTGA	1 cut(s)	135
Hpy166II	GTNNAC	6 cut(s)	87, 244, 508, 1343, 1451, 1793
Hpy188III	TCNNGA	7 cut(s)	408, 938, 1288, 1478, 1557, 1686, 1775
Hpy8I	GTNNAC	6 cut(s)	87, 244, 508, 1343, 1451, 1793
Hpy99I	CGWCG	4 cut(s)	169, 768, 1692, 1760
HpyAV	CCTTC	5 cut(s)	65, 745, 1062, 1239, 1607
HpyCH4III	ACNGT	7 cut(s)	26, 84, 91, 651, 868, 997, 1041
HpyCH4IV	ACGT	4 cut(s)	41, 234, 285, 901
HpyCH4V	TGCA	8 cut(s)	223, 261, 309, 389, 451, 1031, 1037, 1451
HpyF10VI	GCNNNNNNNGC	8 cut(s)	215, 220, 273, 870, 920, 1043, 1251, 1263
HpyF3I	CTNAG	8 cut(s)	272, 546, 614, 790, 1011, 1163, 1711, 1808
HpySE526I	ACGT	4 cut(s)	41, 234, 285, 901
Hsp92I	GRCGYC	4 cut(s)	246, 285, 349, 1755
HspAI	GCGC	3 cut(s)	349, 436, 627
KasI	GGCGCC	1 cut(s)	348
KroI	GCCGGC	2 cut(s)	214, 1728
KroNI	GCCGGC	2 cut(s)	216, 1730
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	4 cut(s)	619, 727, 1159, 1474
LguI	GCTCTTC	1 cut(s)	1653
LmnI	GCTCC	6 cut(s)	136, 728, 1305, 1635, 1643, 1768
Lsp1109I	GCAGC	6 cut(s)	388, 435, 1021, 1043, 1120, 1266
LweI	GCATC	6 cut(s)	39, 210, 1018, 1210, 1263, 1486
MaeI	CTAG	2 cut(s)	1502, 1788
MaeII	ACGT	4 cut(s)	41, 234, 285, 901
MalI	GATC	4 cut(s)	621, 729, 1161, 1476
MboI	GATC	4 cut(s)	619, 727, 1159, 1474
MboII	GAAGA	7 cut(s)	349, 532, 869, 909, 1047, 1562, 1640
MfeI	CAATTG	1 cut(s)	1118
MhlI	GDGCHC	3 cut(s)	1453, 1648, 1705
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	9 cut(s)	10, 452, 458, 633, 812, 953, 1080, 1118, 1521
MluNI	TGGCCA	1 cut(s)	299
Mly113I	GGCGCC	1 cut(s)	349
MlyI	GAGTC	5 cut(s)	332, 1354, 1445, 1728, 1800
MmeI	TCCRAC	6 cut(s)	315, 360, 1314, 1464, 1780, 1793
Mox20I	TGGCCA	1 cut(s)	299
MreI	CGCCGGCG	1 cut(s)	1728
MroNI	GCCGGC	2 cut(s)	214, 1728
MroXI	GAANNNNTTC	1 cut(s)	1075
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	5 cut(s)	587, 660, 917, 1425, 1605
MslI	CAYNNNNRTG	1 cut(s)	299
Msp20I	TGGCCA	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	1034
MspI	CCGG	7 cut(s)	149, 155, 215, 470, 739, 1137, 1729
MspR9I	CCNGG	3 cut(s)	281, 470, 1086
MunI	CAATTG	1 cut(s)	1118
MvaI	CCWGG	2 cut(s)	281, 1086
MwoI	GCNNNNNNNGC	8 cut(s)	215, 220, 273, 870, 920, 1043, 1251, 1263
NaeI	GCCGGC	2 cut(s)	216, 1730
NarI	GGCGCC	1 cut(s)	349
NciI	CCSGG	1 cut(s)	470
NcoI	CCATGG	1 cut(s)	300
NdeI	CATATG	1 cut(s)	1545
NdeII	GATC	4 cut(s)	619, 727, 1159, 1474
NgoMIV	GCCGGC	2 cut(s)	214, 1728
NlaIV	GGNNCC	8 cut(s)	138, 153, 159, 350, 468, 1090, 1141, 1637
NmeAIII	GCCGAG	2 cut(s)	185, 1427
NmuCI	GTSAC	3 cut(s)	607, 779, 1667
NspI	RCATGY	1 cut(s)	914
PaeI	GCATGC	1 cut(s)	914
PagI	TCATGA	1 cut(s)	937
PaqCI	CACCTGC	1 cut(s)	394
PciSI	GCTCTTC	1 cut(s)	1653
PcsI	WCGNNNNNNNCGW	3 cut(s)	333, 1696, 1801
PdiI	GCCGGC	2 cut(s)	216, 1730
PdmI	GAANNNNTTC	1 cut(s)	1075
PfeI	GAWTC	9 cut(s)	184, 190, 196, 599, 1007, 1376, 1415, 1553, 1781
PflFI	GACNNNGTC	2 cut(s)	903, 1754
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	9 cut(s)	353, 375, 378, 435, 450, 1033, 1036, 1135, 1256
PleI	GAGTC	5 cut(s)	332, 1354, 1444, 1728, 1800
PluTI	GGCGCC	1 cut(s)	352
PpsI	GAGTC	5 cut(s)	332, 1354, 1444, 1728, 1800
Ppu21I	YACGTR	1 cut(s)	42
PsiI	TTATAA	1 cut(s)	1097
Psp124BI	GAGCTC	2 cut(s)	1648, 1705
Psp6I	CCWGG	2 cut(s)	279, 1084
PspFI	CCCAGC	1 cut(s)	968
PspGI	CCWGG	2 cut(s)	279, 1084
PspN4I	GGNNCC	8 cut(s)	138, 153, 159, 350, 468, 1090, 1141, 1637
PspPI	GGNCC	4 cut(s)	466, 799, 1088, 1352
PstNI	CAGNNNCTG	1 cut(s)	968
PsyI	GACNNNGTC	2 cut(s)	903, 1754
PvuII	CAGCTG	1 cut(s)	1034
RsaI	GTAC	2 cut(s)	23, 314
RsaNI	GTAC	2 cut(s)	22, 313
RseI	CAYNNNNRTG	1 cut(s)	299
SacI	GAGCTC	2 cut(s)	1648, 1705
SapI	GCTCTTC	1 cut(s)	1653
SaqAI	TTAA	5 cut(s)	587, 660, 917, 1425, 1605
SatI	GCNGC	9 cut(s)	352, 374, 377, 434, 449, 1032, 1035, 1134, 1255
Sau3AI	GATC	4 cut(s)	619, 727, 1159, 1474
Sau96I	GGNCC	4 cut(s)	466, 799, 1088, 1352
SchI	GAGTC	5 cut(s)	332, 1354, 1445, 1728, 1800
ScrFI	CCNGG	3 cut(s)	281, 470, 1086
SduI	GDGCHC	3 cut(s)	1453, 1648, 1705
SfaNI	GCATC	6 cut(s)	39, 210, 1018, 1210, 1263, 1486
SfcI	CTRYAG	1 cut(s)	1570
SfoI	GGCGCC	1 cut(s)	350
SgrAI	CRCCGGYG	1 cut(s)	1728
SinI	GGWCC	2 cut(s)	466, 1088
SmiMI	CAYNNNNRTG	1 cut(s)	299
SphI	GCATGC	1 cut(s)	914
Sse9I	AATT	9 cut(s)	10, 452, 458, 633, 812, 953, 1080, 1118, 1521
SsiI	CCGC	5 cut(s)	134, 161, 352, 374, 433
SspDI	GGCGCC	1 cut(s)	348
SspI	AATATT	1 cut(s)	1429
SspMI	CTAG	2 cut(s)	1502, 1788
SstI	GAGCTC	2 cut(s)	1648, 1705
StyD4I	CCNGG	3 cut(s)	279, 468, 1084
StyI	CCWWGG	2 cut(s)	249, 300
TaaI	ACNGT	7 cut(s)	26, 84, 91, 651, 868, 997, 1041
TaiI	ACGT	4 cut(s)	44, 237, 288, 904
TaqI	TCGA	6 cut(s)	679, 1158, 1193, 1310, 1687, 1758
TasI	AATT	9 cut(s)	10, 452, 458, 633, 812, 953, 1080, 1118, 1521
TauI	GCSGC	3 cut(s)	354, 376, 436
TfiI	GAWTC	9 cut(s)	184, 190, 196, 599, 1007, 1376, 1415, 1553, 1781
Tru1I	TTAA	5 cut(s)	587, 660, 917, 1425, 1605
Tru9I	TTAA	5 cut(s)	587, 660, 917, 1425, 1605
TscAI	CASTG	6 cut(s)	87, 561, 622, 835, 898, 1450
TseFI	GTSAC	3 cut(s)	607, 779, 1667
TseI	GCWGC	6 cut(s)	376, 448, 1031, 1034, 1133, 1254
Tsp45I	GTSAC	3 cut(s)	607, 779, 1667
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	6 cut(s)	87, 561, 622, 835, 898, 1450
Tth111I	GACNNNGTC	2 cut(s)	903, 1754
VneI	GTGCAC	1 cut(s)	1449
VpaK11BI	GGWCC	2 cut(s)	466, 1088
XapI	RAATTY	1 cut(s)	458
XceI	RCATGY	1 cut(s)	914
XcmI	CCANNNNNNNNNTGG	2 cut(s)	207, 298
XmnI	GAANNNNTTC	1 cut(s)	1075
XspI	CTAG	2 cut(s)	1502, 1788
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.