Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010866

Physical Location & Seq

Genomic Coordinates Reverse (-)

1477732 .. 1483418

Gene Structure 5687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00219350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2721 bp

ATGGCGGCCTCAGTCCAGCAGAACCGGCAGTTCCCTCACATCGACCCCGCCCTAAACGGCGTCGTCCGCTCCTCTTTCAAATCAAGTACTCCCAACCGCCACTTCCAAGACATCACTACTCCCCCGAAGAGCTCGGCCCCGATCGACGACTACGACGAGTCGTCCTCCAGCGACGACGAAAACGACGAGAGCATCGTAGAGTACATGGATTTGGTCCGGAGAGGCAACAGAGAATTAGAGCCGTCCATCTTGGACCCCAGAGATGAGGCCACGTCGGACAGCTGGGTGGAGCGCAACCCCAGCATGGTCCGCCTCACAGGGAAACACCCCTTCAACTCGGAGCCGCCGCTCAGCCGGCTCATGCACCACGGCTTCATCACTCCCGTCCCACTCCACTACGTCCGCAACCACGGCGTCGTCCCCAAGGCCACGTGGCACGACTGGACCGTCGAGGTCACCGGCCTCGTCAAGCGGCCCGCCCGGTTCACCATGGACCAGCTCACCACCGAGTTTCGCGCCCGCGAGCTCCCCGTCACCCTCGTTTGCGCGGGAAACCGCCGCAAGGAGCAGAACATGGTGAAGCAGACGATCGGATTCAACTGGGGCGCCGCCGGCGTCTCCACCTCCGTCTGGCGCGGCGTGCGCCTCCGCGACGTCCTCAAGCGGTGCGGGATCTACAGCCGCAAAGGCGGCGCCCTCAACGTCTGCTTCGAAGGCGCCGAGGACCTGCCAGGTGGCGGTGGCTCCAAGTACGCCACCAGTCTGAGAAAAGAGGTCGCCATGGACGAGAGCAGGGATATCATACTTGCTTACATGCAAAACGGCGAGCGTTTGGCCCCCGATCACGGGTTTCCGGTTCGGGTGATCATACCCGGATTTATAGGGGGCCGGATGGTGAAATGGCTCAAACGCATCGTCGTGACGACGAAGGAGTCGGACTGTTACTATCATTACAAGGACAACAGGGTCCTTCCCTCGCATGTCGATGCCGAGCTGGCCAACGCTGAAGCGTGGTGGTACAAGCCGGAGTACATAATCAACGAGCTGAACATAAACTCGGTCATTACGACGCCGTCTCACGAGGAGATATTGTCGATAAACTCGTGGACGAGGCCGTACACCCTCAAAGGCTACGCATATTCCGGAGGGGGTAAGAAAGTGACACGAGTGGAGGTGACTCTAGACGGTGGGGAGACCTGGCACGTCTGCGATCTGGACCACCAAGAGAAGCCGAACAAATATGGGAAATACTGGTGCTGGTGCTTCTGGTCACTGGACGTGGAAGTGCTCAACTTACTGGTAGCCAAAGAGATTGCGGTGAGGGCTTGGGACGAAACCCACAACACTCAGCCCGAAAAGCTCATCTGGAATGTCATGGGAATGATGAACAACTGTTGGTTCCGAGTGAAAATCAATGTGTTGCCACACAGAGGAGAGATTGGAATAGTGTTTGAGCATCCAACCAAACCCGGAAACCAATCCGGTGGGTGGATGGCAAAAGAGAGACGCTTGGAGACCGAATCTAACGCAACCCTCAAGAAGAGTGTCTCTTCACCCTTCATGAACACTTCATCCAAGGTCTACTCAATGTCCGAAGTCAAGAGGCATAACACCCCTCAGTCTACATGGATTGTTGTCCACGGTCACGTCTACGACTGCACTAGATTCCTCAATGACCACCCGGGCGGTGCTGATAGCATTTTGATCAATGCTGGAACAGATTGCACCGAAGAGTTTGAAGCAATCCATTCCGACAAGGCCAAGAAAATGCTCGAGGAATATAGAATAGGCGAGGTGGTCGGTACCACAGGTTACGCCTCGGACTCTAGCTCCCCTAATAATACCGTCCATGGGCCACCAAGAATATCAACTGTGGATTCTATGTCTTCTCTTACGAATTTTTTGGCTCCTATCAAAGAAATCACACTAAAAAGCGTCGCGCTCAATCCGCGCGAGAAAATTCCATGCAAGCTTGTGACCAAGACCTCGATTTCACATGACGTGAGGATATTCAGATTTGCATTGCCTTCAGAAGACCAAGGTCTAGGGTTGCCAGTGGGCAAGCACATATTCTTGTGTGCTACAATTGAGGGCAAGCTTTGCATGAGGGCTTACACACCAACCAGCTCGATTGATGAAGTTGGGTATTTTGAGCTGGTGGTCAAGGTGTATTTTAAGAATGTGCACCCTCGGTTCCCTAATGGTGGACTCATGTCACAGTACTTGGACTCTCTCACAATTGGGTCGTCTCTAGACGTGAAGGGACCATTGGGTCACATAGAGTACAACGGTAAAGGTAACTTTTTGGTCCATGGTAAACCCAAGTTTGCAAAGAAACTCGCTATGATTGCCGGAGGGACGGGGATCACACCCATTTACCAAGTAGCACAAGCCATCCTGAAAGACCCGGAGGACCACACGGAAATGCACGTCGTATATGCAAACCGAACCGAAGAGGACATTTTGTTGAGGGAAGAGCTTGATGGTTGGGCAAAAGAGCATGAAAGGTTCAATGTGTGGTATGTGGTGGAGAATGGTAAGCAAGGCTGGGAATACAGTGTGGGATTCATCACGGAGAGTATACTGAGGGAGCATGTTCCCGATGGATCAGACGGTTCTCTTGCGTTGGCGTGCGGGCCCCCACCAATGATCCAATTTGCCGTGCAGCCCAATCTGGAGAAGATGAACTATGATGTCAAGAATTCGTTGCTGATATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006082 GO:0006807 GO:0006809 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009703 GO:0009987 GO:0016020 GO:0016491 GO:0016661 GO:0017144 GO:0034641 GO:0042126 GO:0042128 GO:0042133 GO:0042136 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046209 GO:0046857 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0071941 GO:0071944 GO:0072593 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00910 ko01120 map00910 map01120

Pfam Domains

Protein Families

Cyt-b5 FAD_binding_6 Mo-co_dimer NAD_binding_1 Oxidored_molyb

Protein Analysis

906

Amino Acids

101.93

Weight (kDa)

6.56

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_molyb	PF00174	137 - 316	1.2e-55	Oxidoreductase molybdopterin binding domain
Mo-co_dimer	PF03404	344 - 473	4.3e-58	Mo-co oxidoreductase dimerisation domain
Cyt-b5	PF00173	530 - 599	1.8e-27	Cytochrome b5-like Heme/Steroid binding domain
FAD_binding_6	PF00970	656 - 762	2.3e-37	Oxidoreductase FAD-binding domain
NAD_binding_1	PF00175	782 - 888	1.2e-34	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37130 AT1G77760
fragaria_vesca	FvH4_5g39010
malus_domestica	MD08G1172400.v1.1 MD15G1357900.v1.1
prunus_persica	Prupe.1G505400_v2.0.a1
pyrus_communis	pycom08g14700 pycom15g32000
rosa_chinensis	RchiOBHm_Chr7g0240971
rosa_laevigata	RLG00000000608
rosa_multiflora	Rmu_co8418311.1_g000001 Rmu_sc0041887.1_g000001 Rmu_ssc0000392.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219350
rosa_rugosa	Rorug07G0341100
rosa_samantha	Rh7AG495900 Rh7BG467400 Rh7CG513400 Rh7DG480400
rosa_wichuraiana	Rw7G041900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	4 cut(s)	446, 931, 965, 2271
AatII	GACGTC	1 cut(s)	657
Acc36I	ACCTGC	1 cut(s)	735
Acc65I	GGTACC	1 cut(s)	1802
AccB1I	GGYRCC	4 cut(s)	605, 692, 716, 1802
AccBSI	CCGCTC	2 cut(s)	69, 349
AccI	GTMKAC	4 cut(s)	1581, 1622, 1650, 2581
AccII	CGCG	8 cut(s)	516, 522, 548, 636, 651, 1940, 1951, 1953
AccIII	TCCGGA	2 cut(s)	216, 1142
AclWI	GGATC	4 cut(s)	680, 2372, 2614, 2644
AcoI	YGGCCR	1 cut(s)	996
AcsI	RAATTY	3 cut(s)	1897, 1959, 2701
AcuI	CTGAAG	2 cut(s)	1026, 2013
AcvI	CACGTG	1 cut(s)	432
AcyI	GRCGYC	8 cut(s)	60, 414, 606, 615, 654, 693, 717, 1070
AfaI	GTAC	9 cut(s)	88, 203, 752, 1019, 1031, 1118, 1804, 2222, 2285
AgsI	TTSAA	5 cut(s)	79, 334, 598, 1739, 2512
AhdI	GACNNNNNGTC	1 cut(s)	160
AjiI	CACGTC	7 cut(s)	273, 1204, 1279, 1648, 2002, 2257, 2431
AjnI	CCWGG	2 cut(s)	730, 1196
AjuI	GAANNNNNNNTTGG	4 cut(s)	86, 118, 2252, 2284
AloI	GAACNNNNNNTCC	2 cut(s)	1556, 1588
Alw21I	GWGCWC	4 cut(s)	134, 528, 1290, 2187
Alw26I	GTCTC	7 cut(s)	622, 1080, 1187, 1498, 1508, 1552, 2253
Alw44I	GTGCAC	1 cut(s)	2183
AlwI	GGATC	4 cut(s)	680, 2372, 2614, 2644
Ama87I	CYCGRG	2 cut(s)	1681, 1772
Aor13HI	TCCGGA	2 cut(s)	216, 1142
ApaI	GGGCCC	1 cut(s)	2640
ApaLI	GTGCAC	1 cut(s)	2183
ApeKI	GCWGC	1 cut(s)	2665
ApoI	RAATTY	3 cut(s)	1897, 1959, 2701
ArsI	GACNNNNNNTTYG	2 cut(s)	900, 932
Asp718I	GGTACC	1 cut(s)	1802
AsuC2I	CCSGG	6 cut(s)	481, 873, 1470, 1682, 1683, 2408
AsuII	TTCGAA	1 cut(s)	711
AvaI	CYCGRG	2 cut(s)	1681, 1772
BaeGI	GKGCMC	2 cut(s)	2187, 2640
BalI	TGGCCA	1 cut(s)	998
BanI	GGYRCC	4 cut(s)	605, 692, 716, 1802
BanII	GRGCYC	3 cut(s)	134, 528, 2640
BauI	CACGAG	3 cut(s)	1079, 1102, 1164
BbrPI	CACGTG	1 cut(s)	432
BbsI	GAAGAC	2 cut(s)	1878, 2040
Bbv12I	GWGCWC	4 cut(s)	134, 528, 1290, 2187
BbvI	GCAGC	1 cut(s)	2677
BccI	CCATC	6 cut(s)	254, 886, 1486, 2402, 2477, 2597
BceAI	ACGGC	8 cut(s)	73, 226, 385, 427, 838, 1057, 1099, 2645
BciT130I	CCWGG	2 cut(s)	732, 1198
BclI	TGATCA	2 cut(s)	864, 1704
BcnI	CCSGG	6 cut(s)	481, 873, 1470, 1682, 1683, 2408
BcoDI	GTCTC	7 cut(s)	622, 1080, 1187, 1498, 1508, 1552, 2253
BfaI	CTAG	5 cut(s)	1181, 1662, 1827, 2045, 2252
BfmI	CTRYAG	1 cut(s)	676
BfoI	RGCGCY	3 cut(s)	609, 696, 720
BfuAI	ACCTGC	1 cut(s)	735
BglI	GCCNNNNNGGC	2 cut(s)	687, 995
BlpI	GCTNAGC	1 cut(s)	350
BmcAI	AGTACT	2 cut(s)	88, 2222
Bme1390I	CCNGG	8 cut(s)	481, 732, 873, 1198, 1470, 1682, 1683, 2408
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmeT110I	CYCGRG	2 cut(s)	1681, 1772
BmgBI	CACGTC	7 cut(s)	273, 1204, 1279, 1648, 2002, 2257, 2431
BmrFI	CCNGG	8 cut(s)	481, 732, 873, 1198, 1470, 1682, 1683, 2408
BmrI	ACTGGG	1 cut(s)	610
BmsI	GCATC	4 cut(s)	201, 921, 976, 1465
BmuI	ACTGGG	1 cut(s)	610
BoxI	GACNNNNGTC	2 cut(s)	2040, 2212
BpiI	GAAGAC	2 cut(s)	1878, 2040
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	2 cut(s)	151, 2696
Bpu1102I	GCTNAGC	1 cut(s)	350
Bpu14I	TTCGAA	1 cut(s)	711
BpuEI	CTTGAG	2 cut(s)	644, 1520
BpuMI	CCSGG	6 cut(s)	481, 873, 1470, 1682, 1683, 2408
BsaAI	YACGTR	1 cut(s)	432
BsaHI	GRCGYC	8 cut(s)	60, 414, 606, 615, 654, 693, 717, 1070
BsaI	GGTCTC	2 cut(s)	1187, 1508
BsaWI	WCCGGW	4 cut(s)	216, 853, 1142, 1481
BsaXI	ACNNNNNCTCC	4 cut(s)	1076, 1106, 1814, 1844
Bse118I	RCCGGY	4 cut(s)	24, 354, 458, 611
Bse1I	ACTGG	7 cut(s)	446, 605, 759, 1256, 1278, 1302, 2054
Bse3DI	GCAATG	1 cut(s)	2021
BseAI	TCCGGA	2 cut(s)	216, 1142
BseBI	CCWGG	2 cut(s)	732, 1198
BseGI	GGATG	5 cut(s)	897, 1456, 1497, 1571, 2394
BseMI	GCAATG	1 cut(s)	2021
BseMII	CTCAG	6 cut(s)	24, 364, 755, 1361, 1631, 2576
BseNI	ACTGG	7 cut(s)	446, 605, 759, 1256, 1278, 1302, 2054
BseRI	GAGGAG	3 cut(s)	61, 1097, 1446
BseSI	GKGCMC	2 cut(s)	2187, 2640
BseXI	GCAGC	1 cut(s)	2677
BseYI	CCCAGC	3 cut(s)	282, 299, 2547
BsgI	GTGCAG	2 cut(s)	1642, 2684
Bsh1236I	CGCG	8 cut(s)	516, 522, 548, 636, 651, 1940, 1951, 1953
Bsh1285I	CGRYCG	2 cut(s)	144, 591
BshNI	GGYRCC	4 cut(s)	605, 692, 716, 1802
BsiEI	CGRYCG	2 cut(s)	144, 591
BsiHKAI	GWGCWC	4 cut(s)	134, 528, 1290, 2187
BsiHKCI	CYCGRG	2 cut(s)	1681, 1772
BslFI	GGGAC	5 cut(s)	371, 404, 1343, 2277, 2371
BsmAI	GTCTC	7 cut(s)	622, 1080, 1187, 1498, 1508, 1552, 2253
BsmBI	CGTCTC	4 cut(s)	622, 1080, 1498, 2253
BsmFI	GGGAC	5 cut(s)	371, 404, 1343, 2277, 2371
Bso31I	GGTCTC	2 cut(s)	1187, 1508
BsoBI	CYCGRG	2 cut(s)	1681, 1772
Bsp119I	TTCGAA	1 cut(s)	711
Bsp120I	GGGCCC	1 cut(s)	2636
Bsp1286I	GDGCHC	5 cut(s)	134, 528, 1290, 2187, 2640
Bsp13I	TCCGGA	2 cut(s)	216, 1142
Bsp1720I	GCTNAGC	1 cut(s)	350
Bsp19I	CCATGG	4 cut(s)	489, 780, 1849, 2311
BspCNI	CTCAG	6 cut(s)	23, 363, 756, 1360, 1630, 2577
BspEI	TCCGGA	2 cut(s)	216, 1142
BspFNI	CGCG	8 cut(s)	516, 522, 548, 636, 651, 1940, 1951, 1953
BspHI	TCATGA	1 cut(s)	1560
BspMI	ACCTGC	1 cut(s)	735
BspPI	GGATC	4 cut(s)	680, 2372, 2614, 2644
BspQI	GCTCTTC	2 cut(s)	122, 2469
BspT104I	TTCGAA	1 cut(s)	711
BspT107I	GGYRCC	4 cut(s)	605, 692, 716, 1802
BspTNI	GGTCTC	2 cut(s)	1187, 1508
BsrBI	CCGCTC	2 cut(s)	69, 349
BsrDI	GCAATG	1 cut(s)	2021
BsrFI	RCCGGY	4 cut(s)	24, 354, 458, 611
BsrI	ACTGG	7 cut(s)	446, 605, 759, 1256, 1278, 1302, 2054
BssAI	RCCGGY	4 cut(s)	24, 354, 458, 611
BssNAI	GTATAC	1 cut(s)	2582
BssNI	GRCGYC	8 cut(s)	60, 414, 606, 615, 654, 693, 717, 1070
BssSI	CACGAG	3 cut(s)	1079, 1102, 1164
BssT1I	CCWWGG	7 cut(s)	423, 489, 780, 1575, 1849, 2038, 2311
Bst1107I	GTATAC	1 cut(s)	2582
Bst2BI	CACGAG	3 cut(s)	1079, 1102, 1164
Bst2UI	CCWGG	2 cut(s)	732, 1198
Bst6I	CTCTTC	6 cut(s)	122, 1535, 1555, 1725, 2448, 2469
BstACI	GRCGYC	8 cut(s)	60, 414, 606, 615, 654, 693, 717, 1070
BstAPI	GCANNNNNTGC	1 cut(s)	2100
BstBAI	YACGTR	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	711
BstDEI	CTNAG	6 cut(s)	10, 350, 764, 1347, 1617, 2585
BstDSI	CCRYGG	7 cut(s)	367, 409, 489, 780, 1639, 1849, 2311
BstEII	GGTNACC	1 cut(s)	454
BstF5I	GGATG	5 cut(s)	897, 1456, 1497, 1571, 2394
BstFNI	CGCG	8 cut(s)	516, 522, 548, 636, 651, 1940, 1951, 1953
BstH2I	RGCGCY	3 cut(s)	609, 696, 720
BstMAI	GTCTC	7 cut(s)	622, 1080, 1187, 1498, 1508, 1552, 2253
BstMCI	CGRYCG	2 cut(s)	144, 591
BstNI	CCWGG	2 cut(s)	732, 1198
BstNSI	RCATGY	3 cut(s)	817, 983, 2597
BstPAI	GACNNNNGTC	2 cut(s)	2040, 2212
BstPI	GGTNACC	1 cut(s)	454
BstSCI	CCNGG	8 cut(s)	479, 730, 871, 1196, 1468, 1680, 1681, 2406
BstSFI	CTRYAG	1 cut(s)	676
BstSLI	GKGCMC	2 cut(s)	2187, 2640
BstUI	CGCG	8 cut(s)	516, 522, 548, 636, 651, 1940, 1951, 1953
BstV1I	GCAGC	1 cut(s)	2677
BstV2I	GAAGAC	2 cut(s)	1878, 2040
BstX2I	RGATCY	1 cut(s)	672
BstXI	CCANNNNNNTGG	1 cut(s)	1484
BstYI	RGATCY	1 cut(s)	672
BstZ17I	GTATAC	1 cut(s)	2582
BtgI	CCRYGG	7 cut(s)	367, 409, 489, 780, 1639, 1849, 2311
BtrI	CACGTC	7 cut(s)	273, 1204, 1279, 1648, 2002, 2257, 2431
BtsCI	GGATG	5 cut(s)	897, 1456, 1497, 1571, 2394
BtsIMutI	CAGTG	3 cut(s)	1271, 2061, 2563
BveI	ACCTGC	1 cut(s)	735
CciI	TCATGA	1 cut(s)	1560
Cfr10I	RCCGGY	4 cut(s)	24, 354, 458, 611
Cfr9I	CCCGGG	1 cut(s)	1681
CseI	GACGC	6 cut(s)	49, 403, 604, 1078, 1515, 1924
Csp6I	GTAC	9 cut(s)	87, 202, 751, 1018, 1030, 1117, 1803, 2221, 2284
CviQI	GTAC	9 cut(s)	87, 202, 751, 1018, 1030, 1117, 1803, 2221, 2284
DdeI	CTNAG	6 cut(s)	10, 350, 764, 1347, 1617, 2585
DinI	GGCGCC	3 cut(s)	607, 694, 718
DrdI	GACNNNNNNGTC	4 cut(s)	446, 931, 965, 2271
DriI	GACNNNNNGTC	1 cut(s)	160
DseDI	GACNNNNNNGTC	4 cut(s)	446, 931, 965, 2271
EaeI	YGGCCR	1 cut(s)	996
Eam1104I	CTCTTC	6 cut(s)	122, 1535, 1555, 1725, 2448, 2469
Eam1105I	GACNNNNNGTC	1 cut(s)	160
EarI	CTCTTC	6 cut(s)	122, 1535, 1555, 1725, 2448, 2469
EciI	GGCGGA	1 cut(s)	299
Ecl136II	GAGCTC	2 cut(s)	132, 526
Eco130I	CCWWGG	7 cut(s)	423, 489, 780, 1575, 1849, 2038, 2311
Eco24I	GRGCYC	3 cut(s)	134, 528, 2640
Eco31I	GGTCTC	2 cut(s)	1187, 1508
Eco32I	GATATC	1 cut(s)	799
Eco53kI	GAGCTC	2 cut(s)	132, 526
Eco57I	CTGAAG	2 cut(s)	1026, 2013
Eco72I	CACGTG	1 cut(s)	432
Eco88I	CYCGRG	2 cut(s)	1681, 1772
Eco91I	GGTNACC	1 cut(s)	454
EcoICRI	GAGCTC	2 cut(s)	132, 526
EcoO109I	RGGNCCY	3 cut(s)	724, 967, 2637
EcoO65I	GGTNACC	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	2701
EcoRII	CCWGG	2 cut(s)	730, 1196
EcoRV	GATATC	1 cut(s)	799
EcoT14I	CCWWGG	7 cut(s)	423, 489, 780, 1575, 1849, 2038, 2311
EcoT38I	GRGCYC	3 cut(s)	134, 528, 2640
EgeI	GGCGCC	3 cut(s)	607, 694, 718
EheI	GGCGCC	3 cut(s)	607, 694, 718
ErhI	CCWWGG	7 cut(s)	423, 489, 780, 1575, 1849, 2038, 2311
Esp3I	CGTCTC	4 cut(s)	622, 1080, 1498, 2253
FaqI	GGGAC	5 cut(s)	371, 404, 1343, 2277, 2371
FauI	CCCGC	6 cut(s)	55, 484, 527, 541, 662, 2627
FbaI	TGATCA	2 cut(s)	864, 1704
FblI	GTMKAC	4 cut(s)	1581, 1622, 1650, 2581
FokI	GGATG	5 cut(s)	904, 1443, 1504, 1558, 2381
FriOI	GRGCYC	3 cut(s)	134, 528, 2640
FspBI	CTAG	5 cut(s)	1181, 1662, 1827, 2045, 2252
GsaI	CCCAGC	3 cut(s)	286, 303, 2551
GsuI	CTGGAG	2 cut(s)	151, 2696
HaeII	RGCGCY	3 cut(s)	609, 696, 720
HgaI	GACGC	6 cut(s)	49, 403, 604, 1078, 1515, 1924
Hin1I	GRCGYC	8 cut(s)	60, 414, 606, 615, 654, 693, 717, 1070
HindIII	AAGCTT	2 cut(s)	1970, 2096
HpyAV	CCTTC	7 cut(s)	340, 707, 922, 980, 1567, 2037, 2254
HpyF3I	CTNAG	6 cut(s)	10, 350, 764, 1347, 1617, 2585
Hsp92I	GRCGYC	8 cut(s)	60, 414, 606, 615, 654, 693, 717, 1070
KasI	GGCGCC	3 cut(s)	605, 692, 716
Kpn2I	TCCGGA	2 cut(s)	216, 1142
KpnI	GGTACC	1 cut(s)	1806
KroI	GCCGGC	2 cut(s)	354, 611
KroNI	GCCGGC	2 cut(s)	356, 613
Ksp22I	TGATCA	2 cut(s)	864, 1704
LguI	GCTCTTC	2 cut(s)	122, 2469
LmnI	GCTCC	9 cut(s)	74, 289, 340, 531, 565, 749, 1835, 1912, 2590
Lsp1109I	GCAGC	1 cut(s)	2677
LweI	GCATC	4 cut(s)	201, 921, 976, 1465
MaeI	CTAG	5 cut(s)	1181, 1662, 1827, 2045, 2252
MbiI	CCGCTC	2 cut(s)	69, 349
MboII	GAAGA	9 cut(s)	139, 1542, 1552, 1742, 1878, 2045, 2465, 2486, 2692
MfeI	CAATTG	2 cut(s)	2085, 2238
MflI	RGATCY	1 cut(s)	672
MhlI	GDGCHC	5 cut(s)	134, 528, 1290, 2187, 2640
MlsI	TGGCCA	1 cut(s)	998
MluCI	AATT	7 cut(s)	233, 1897, 1959, 2085, 2238, 2654, 2701
MluNI	TGGCCA	1 cut(s)	998
Mly113I	GGCGCC	3 cut(s)	606, 693, 717
MlyI	GAGTC	6 cut(s)	167, 941, 1171, 1817, 2202, 2222
MmeI	TCCRAC	4 cut(s)	255, 915, 1484, 1776
Mox20I	TGGCCA	1 cut(s)	998
MreI	CGCCGGCG	1 cut(s)	611
MroI	TCCGGA	2 cut(s)	216, 1142
MroNI	GCCGGC	2 cut(s)	354, 611
MscI	TGGCCA	1 cut(s)	998
MseI	TTAA	1 cut(s)	2175
MslI	CAYNNNNRTG	4 cut(s)	917, 984, 1379, 2423
Msp20I	TGGCCA	1 cut(s)	998
MspA1I	CMGCKG	1 cut(s)	282
MspR9I	CCNGG	8 cut(s)	481, 732, 873, 1198, 1470, 1682, 1683, 2408
MunI	CAATTG	2 cut(s)	2085, 2238
MvaI	CCWGG	2 cut(s)	732, 1198
MvnI	CGCG	8 cut(s)	516, 522, 548, 636, 651, 1940, 1951, 1953
NaeI	GCCGGC	2 cut(s)	356, 613
NarI	GGCGCC	3 cut(s)	606, 693, 717
NciI	CCSGG	6 cut(s)	481, 873, 1470, 1682, 1683, 2408
NcoI	CCATGG	4 cut(s)	489, 780, 1849, 2311
NgoMIV	GCCGGC	2 cut(s)	354, 611
NmeAIII	GCCGAG	3 cut(s)	113, 745, 1015
NspI	RCATGY	3 cut(s)	817, 983, 2597
NspV	TTCGAA	1 cut(s)	711
PaeR7I	CTCGAG	1 cut(s)	1772
PagI	TCATGA	1 cut(s)	1560
PciSI	GCTCTTC	2 cut(s)	122, 2469
PdiI	GCCGGC	2 cut(s)	356, 613
PfeI	GAWTC	5 cut(s)	594, 1520, 1665, 1877, 2565
PflFI	GACNNNGTC	1 cut(s)	1072
Ple19I	CGATCG	2 cut(s)	144, 591
PleI	GAGTC	6 cut(s)	166, 940, 1171, 1817, 2202, 2222
PluTI	GGCGCC	3 cut(s)	609, 696, 720
PmaCI	CACGTG	1 cut(s)	432
PmlI	CACGTG	1 cut(s)	432
PpsI	GAGTC	6 cut(s)	166, 940, 1171, 1817, 2202, 2222
Ppu21I	YACGTR	1 cut(s)	432
PpuMI	RGGWCCY	2 cut(s)	724, 967
PshAI	GACNNNNGTC	2 cut(s)	2040, 2212
Psp124BI	GAGCTC	2 cut(s)	134, 528
Psp5II	RGGWCCY	2 cut(s)	724, 967
Psp6I	CCWGG	2 cut(s)	730, 1196
PspCI	CACGTG	1 cut(s)	432
PspEI	GGTNACC	1 cut(s)	454
PspFI	CCCAGC	3 cut(s)	282, 299, 2547
PspGI	CCWGG	2 cut(s)	730, 1196
PspOMI	GGGCCC	1 cut(s)	2636
PspPPI	RGGWCCY	2 cut(s)	724, 967
PspXI	VCTCGAGB	1 cut(s)	1772
PsuI	RGATCY	1 cut(s)	672
PsyI	GACNNNGTC	1 cut(s)	1072
PvuI	CGATCG	2 cut(s)	144, 591
PvuII	CAGCTG	1 cut(s)	282
RsaI	GTAC	9 cut(s)	88, 203, 752, 1019, 1031, 1118, 1804, 2222, 2285
RsaNI	GTAC	9 cut(s)	87, 202, 751, 1018, 1030, 1117, 1803, 2221, 2284
RseI	CAYNNNNRTG	4 cut(s)	917, 984, 1379, 2423
SacI	GAGCTC	2 cut(s)	134, 528
SapI	GCTCTTC	2 cut(s)	122, 2469
SaqAI	TTAA	1 cut(s)	2175
ScaI	AGTACT	2 cut(s)	88, 2222
SchI	GAGTC	6 cut(s)	167, 941, 1171, 1817, 2202, 2222
ScrFI	CCNGG	8 cut(s)	481, 732, 873, 1198, 1470, 1682, 1683, 2408
SduI	GDGCHC	5 cut(s)	134, 528, 1290, 2187, 2640
SfaNI	GCATC	4 cut(s)	201, 921, 976, 1465
SfcI	CTRYAG	1 cut(s)	676
SfoI	GGCGCC	3 cut(s)	607, 694, 718
Sfr274I	CTCGAG	1 cut(s)	1772
SfuI	TTCGAA	1 cut(s)	711
SgrAI	CRCCGGYG	1 cut(s)	611
SlaI	CTCGAG	1 cut(s)	1772
SmaI	CCCGGG	1 cut(s)	1683
SmiMI	CAYNNNNRTG	4 cut(s)	917, 984, 1379, 2423
SmlI	CTYRAG	3 cut(s)	659, 1535, 1772
SmoI	CTYRAG	3 cut(s)	659, 1535, 1772
Sse9I	AATT	7 cut(s)	233, 1897, 1959, 2085, 2238, 2654, 2701
SspDI	GGCGCC	3 cut(s)	605, 692, 716
SspMI	CTAG	5 cut(s)	1181, 1662, 1827, 2045, 2252
SstI	GAGCTC	2 cut(s)	134, 528
StyD4I	CCNGG	8 cut(s)	479, 730, 871, 1196, 1468, 1680, 1681, 2406
StyI	CCWWGG	7 cut(s)	423, 489, 780, 1575, 1849, 2038, 2311
TaqI	TCGA	9 cut(s)	42, 144, 450, 711, 984, 1094, 1773, 1988, 2129
TaqII	GACCGA	2 cut(s)	1048, 1532
TasI	AATT	7 cut(s)	233, 1897, 1959, 2085, 2238, 2654, 2701
TatI	WGTACW	5 cut(s)	86, 201, 1029, 2220, 2283
TauI	GCSGC	9 cut(s)	8, 346, 349, 475, 561, 611, 639, 684, 693
TfiI	GAWTC	5 cut(s)	594, 1520, 1665, 1877, 2565
Tru1I	TTAA	1 cut(s)	2175
Tru9I	TTAA	1 cut(s)	2175
TscAI	CASTG	3 cut(s)	1278, 2061, 2563
TseI	GCWGC	1 cut(s)	2665
TspDTI	ATGAA	9 cut(s)	364, 1400, 1549, 1560, 1577, 2151, 2517, 2557, 2699
TspGWI	ACGGA	3 cut(s)	616, 2435, 2588
TspMI	CCCGGG	1 cut(s)	1681
TspRI	CASTG	3 cut(s)	1278, 2061, 2563
Tth111I	GACNNNGTC	1 cut(s)	1072
VneI	GTGCAC	1 cut(s)	2183
XapI	RAATTY	3 cut(s)	1897, 1959, 2701
XbaI	TCTAGA	2 cut(s)	1180, 2251
XceI	RCATGY	3 cut(s)	817, 983, 2597
XhoI	CTCGAG	1 cut(s)	1772
XmaI	CCCGGG	1 cut(s)	1681
XmiI	GTMKAC	4 cut(s)	1581, 1622, 1650, 2581
XspI	CTAG	5 cut(s)	1181, 1662, 1827, 2045, 2252
ZraI	GACGTC	1 cut(s)	655
ZrmI	AGTACT	2 cut(s)	88, 2222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.