Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010866

Physical Location & Seq

Genomic Coordinates Forward (+)

37590685 .. 37592118

Gene Structure 1434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0341100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGCAATTTGATACAGTAGATGCTGCATTTCAATTTTGGCGTAAGTATGGAGGCCGAACTGGTTTTGGGGTTCGAAAAGTGTATGCAAATAAGAGTCGAATAGATGGACAAATTACTACAGTTAGATTTGTGTGCTCAAAAGAGGGTAATCGAGTAGCAGATAAACGAGATCATCTAACAAAGAACCCTAGAGCAGAAACAAGAACAAACTGTCTTGTACGATTGGGACTGCAATTCAATAGAGAAAGTAGCAAGTTTGAGGTTCATGATTTTGTACATGAGCATAATCATCTTCTGCATACTCCAGAAACGTGTCACATGATTCTATCTCAACGGAATCTAACAGATAGCCAAGCTATTCATATTGATTTTGCCGATGACTCTAGACTTAAACCAAAGGCTGCACACCAATTTTTCAGTCAACAAGTTGGTGGGAAGGAAAATCTTGGATACACTGAAACAGATAAAAAAAACTACTTAAGAAGTAAGCAGCAAAAGGATATGGCATATGGAGAAGCAGGCAGCCTCCTAAGATATTTACACAATCAATCTTGTGAGAATCCCTCATTCCAATATGCTGTACAATTGGATAGTGAAGAACAGATTACAAATATATTTTGGGCAGATACAAGAATGATTATTGCTTATGCTCATTTTGGTGATGTCATTACTTTCGACACCACATACAGTACTAATAAAGAATATAGGCCTTTTGGGGTATTTTCTGGGTTTAATCATCACAGAGAAACTGTACTATTTGAAGCTGCACTCCTTTATGATGAGACAGCTGAATCTTTTAAGTGGTTGTTCCAGACATTCTTAGAAGCACATAAGCAAAAAAAGCCAAAGACTATATTTACAGACGAAGATCCTGCAATGGCAAACGCATTGGCCGAGGTGCTTCCAGATATGTTAAATGGAGTATGTAGTTGGCATATAATGCAAAATGGAATCAAGCATTTGGGATACCTGATGAAGGATGGCTCATTTTTTCTTACAGATTTTGCAGCATGCATGTATGAGCACGAGGAAGAGAAAGAATTTGAAGATGCTTGGAATGCTATGCTATGCAAATATAATGTTTGCAGCAATCCATGGTTGGAAAAGATATATGAAATTAAGGAGAAATGGGCTAAATGTTACATGAAAGAGGTATTTACAATTGGTATGCGAAGTACACAGCTTAGTGACAGCCTGAACAGTGATTTAAAAGCTTACTTAAAGTCAGACATGGATATCATGCGTTTTTTTAAACAGTTTGAAAGGGTCGCTAATGAAAAGCACTATAAGGAGATAGAAGCTGAGTATAATTCTAGGCAAAAGTTACCGAGAGTGAAGGTACAAAAATCACCTGTACTACAACAAGCAGCAAAAATCTACACTCCATCAAGTATTTCCAAGAAGAATTTGATTGGTCTTCAGCAGCTATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006082 GO:0006807 GO:0006809 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009703 GO:0009987 GO:0016020 GO:0016491 GO:0016661 GO:0017144 GO:0034641 GO:0042126 GO:0042128 GO:0042133 GO:0042136 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046209 GO:0046857 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0071941 GO:0071944 GO:0072593 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00910 ko01120 map00910 map01120

Pfam Domains

Protein Families

Cyt-b5 FAD_binding_6 Mo-co_dimer NAD_binding_1 Oxidored_molyb

Protein Analysis

477

Amino Acids

55.62

Weight (kDa)

7.63

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	11 - 99	2.2e-19	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	191 - 303	6.6e-13	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	222 - 316	5.5e-26	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37130 AT1G77760
fragaria_vesca	FvH4_5g39010
malus_domestica	MD08G1172400.v1.1 MD15G1357900.v1.1
prunus_persica	Prupe.1G505400_v2.0.a1
pyrus_communis	pycom08g14700 pycom15g32000
rosa_chinensis	RchiOBHm_Chr7g0240971
rosa_laevigata	RLG00000000608
rosa_multiflora	Rmu_co8418311.1_g000001 Rmu_sc0041887.1_g000001 Rmu_ssc0000392.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219350
rosa_rugosa	Rorug07G0341100
rosa_samantha	Rh7AG495900 Rh7BG467400 Rh7CG513400 Rh7DG480400
rosa_wichuraiana	Rw7G041900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1432
AclWI	GGATC	1 cut(s)	863
AcoI	YGGCCR	1 cut(s)	891
AcsI	RAATTY	2 cut(s)	1040, 1405
AcuI	CTGAAG	1 cut(s)	1403
AfaI	GTAC	8 cut(s)	219, 276, 582, 691, 753, 1177, 1341, 1356
AfiI	CCNNNNNNNGG	1 cut(s)	976
AflII	CTTAAG	1 cut(s)	478
AflIII	ACRYGT	1 cut(s)	311
AgsI	TTSAA	5 cut(s)	32, 238, 761, 1046, 1262
AluBI	AGCT	7 cut(s)	356, 764, 788, 1183, 1214, 1301, 1426
AluI	AGCT	7 cut(s)	356, 764, 788, 1183, 1214, 1301, 1426
Alw21I	GWGCWC	2 cut(s)	137, 1026
Alw26I	GTCTC	1 cut(s)	776
AlwI	GGATC	1 cut(s)	863
AoxI	GGCC	3 cut(s)	52, 707, 891
ApeKI	GCWGC	9 cut(s)	23, 401, 490, 522, 764, 1007, 1086, 1367, 1423
ApoI	RAATTY	2 cut(s)	1040, 1405
AsuHPI	GGTGA	2 cut(s)	671, 1341
AsuII	TTCGAA	1 cut(s)	73
BauI	CACGAG	1 cut(s)	1025
BbsI	GAAGAC	1 cut(s)	1409
Bbv12I	GWGCWC	2 cut(s)	137, 1026
BbvI	GCAGC	8 cut(s)	10, 388, 502, 534, 751, 1019, 1098, 1379
BccI	CCATC	3 cut(s)	98, 974, 1393
BcgI	CGANNNNNNTGC	2 cut(s)	854, 888
BciVI	GTATCC	2 cut(s)	443, 959
BcoDI	GTCTC	1 cut(s)	776
BfaI	CTAG	3 cut(s)	189, 384, 1314
BfmI	CTRYAG	1 cut(s)	117
BfrI	CTTAAG	1 cut(s)	478
BfuI	GTATCC	2 cut(s)	443, 959
BisI	GCNGC	9 cut(s)	24, 402, 491, 523, 765, 1008, 1087, 1368, 1424
BlsI	GCNGC	9 cut(s)	25, 403, 492, 524, 766, 1009, 1088, 1369, 1425
BmcAI	AGTACT	1 cut(s)	691
BmsI	GCATC	2 cut(s)	10, 1039
BpiI	GAAGAC	1 cut(s)	1409
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpmI	CTGGAG	1 cut(s)	288
Bpu14I	TTCGAA	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	894, 1094
Bsc4I	CCNNNNNNNGG	1 cut(s)	976
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	882
BseDI	CCNNGG	2 cut(s)	894, 1094
BseGI	GGATG	1 cut(s)	985
BseLI	CCNNNNNNNGG	1 cut(s)	976
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	1 cut(s)	1293
BseNI	ACTGG	1 cut(s)	64
BseXI	GCAGC	8 cut(s)	10, 388, 502, 534, 751, 1019, 1098, 1379
BsgI	GTGCAG	2 cut(s)	387, 750
BshFI	GGCC	3 cut(s)	54, 709, 893
BsiHKAI	GWGCWC	2 cut(s)	137, 1026
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	976
BsmAI	GTCTC	1 cut(s)	776
BsmFI	GGGAC	1 cut(s)	240
BsmI	GAATGC	1 cut(s)	1063
BsnI	GGCC	3 cut(s)	54, 709, 893
Bsp119I	TTCGAA	1 cut(s)	73
Bsp1286I	GDGCHC	2 cut(s)	137, 1026
Bsp1407I	TGTACA	2 cut(s)	274, 580
Bsp143I	GATC	2 cut(s)	169, 868
Bsp19I	CCATGG	1 cut(s)	1094
BspANI	GGCC	3 cut(s)	54, 709, 893
BspCNI	CTCAG	1 cut(s)	1294
BspHI	TCATGA	1 cut(s)	265
BspPI	GGATC	1 cut(s)	863
BspT104I	TTCGAA	1 cut(s)	73
BspTI	CTTAAG	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	882
BsrGI	TGTACA	2 cut(s)	274, 580
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	894, 1094
BssMI	GATC	2 cut(s)	169, 868
BssSI	CACGAG	1 cut(s)	1025
BssT1I	CCWWGG	1 cut(s)	1094
Bst2BI	CACGAG	1 cut(s)	1025
Bst4CI	ACNGT	7 cut(s)	16, 121, 212, 689, 751, 1202, 1257
Bst6I	CTCTTC	1 cut(s)	1026
BstAFI	CTTAAG	1 cut(s)	478
BstAPI	GCANNNNNTGC	1 cut(s)	940
BstAUI	TGTACA	2 cut(s)	274, 580
BstBI	TTCGAA	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	520, 1012
BstDEI	CTNAG	4 cut(s)	530, 820, 1184, 1302
BstDSI	CCRYGG	1 cut(s)	1094
BstENI	CCTNNNNNAGG	1 cut(s)	974
BstF5I	GGATG	1 cut(s)	985
BstKTI	GATC	2 cut(s)	172, 871
BstMAI	GTCTC	1 cut(s)	776
BstMBI	GATC	2 cut(s)	169, 868
BstMWI	GCNNNNNNNGC	3 cut(s)	841, 940, 1058
BstNSI	RCATGY	2 cut(s)	1014, 1018
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	8 cut(s)	10, 388, 502, 534, 751, 1019, 1098, 1379
BstV2I	GAAGAC	1 cut(s)	1409
BstX2I	RGATCY	1 cut(s)	868
BstYI	RGATCY	1 cut(s)	868
BsuI	GTATCC	2 cut(s)	443, 959
BsuRI	GGCC	3 cut(s)	54, 709, 893
BtgI	CCRYGG	1 cut(s)	1094
BtsCI	GGATG	1 cut(s)	985
BtsIMutI	CAGTG	2 cut(s)	453, 1207
Cac8I	GCNNGC	2 cut(s)	520, 1012
CciI	TCATGA	1 cut(s)	265
Csp6I	GTAC	8 cut(s)	218, 275, 581, 690, 752, 1176, 1340, 1355
CviAII	CATG	9 cut(s)	266, 278, 319, 1011, 1015, 1095, 1144, 1231, 1240
CviQI	GTAC	8 cut(s)	218, 275, 581, 690, 752, 1176, 1340, 1355
DdeI	CTNAG	4 cut(s)	530, 820, 1184, 1302
DpnI	GATC	2 cut(s)	171, 870
DpnII	GATC	2 cut(s)	169, 868
DraI	TTTAAA	2 cut(s)	1209, 1252
EaeI	YGGCCR	1 cut(s)	891
Eam1104I	CTCTTC	1 cut(s)	1026
EarI	CTCTTC	1 cut(s)	1026
Eco130I	CCWWGG	1 cut(s)	1094
Eco147I	AGGCCT	1 cut(s)	709
Eco32I	GATATC	1 cut(s)	1237
Eco57I	CTGAAG	1 cut(s)	1403
EcoNI	CCTNNNNNAGG	1 cut(s)	974
EcoRV	GATATC	1 cut(s)	1237
EcoT14I	CCWWGG	1 cut(s)	1094
EcoT22I	ATGCAT	1 cut(s)	1016
ErhI	CCWWGG	1 cut(s)	1094
FaeI	CATG	9 cut(s)	269, 281, 322, 1014, 1018, 1098, 1147, 1234, 1243
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	9 cut(s)	265, 277, 318, 1010, 1014, 1094, 1143, 1230, 1239
FauNDI	CATATG	1 cut(s)	508
Fnu4HI	GCNGC	9 cut(s)	24, 402, 491, 523, 765, 1008, 1087, 1368, 1424
FokI	GGATG	1 cut(s)	992
Fsp4HI	GCNGC	9 cut(s)	24, 402, 491, 523, 765, 1008, 1087, 1368, 1424
FspBI	CTAG	3 cut(s)	189, 384, 1314
GluI	GCNGC	9 cut(s)	24, 402, 491, 523, 765, 1008, 1087, 1368, 1424
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	3 cut(s)	54, 709, 893
Hin1II	CATG	9 cut(s)	269, 281, 322, 1014, 1018, 1098, 1147, 1234, 1243
HincII	GTYRAC	1 cut(s)	422
HindII	GTYRAC	1 cut(s)	422
HindIII	AAGCTT	1 cut(s)	1212
HinfI	GANTC	7 cut(s)	94, 322, 337, 380, 559, 791, 951
HphI	GGTGA	2 cut(s)	671, 1341
Hpy166II	GTNNAC	2 cut(s)	422, 1178
Hpy188I	TCNGA	1 cut(s)	1228
Hpy188III	TCNNGA	5 cut(s)	266, 305, 384, 811, 905
Hpy8I	GTNNAC	2 cut(s)	422, 1178
HpyAV	CCTTC	3 cut(s)	430, 970, 1330
HpyCH4III	ACNGT	7 cut(s)	16, 121, 212, 689, 751, 1202, 1257
HpyCH4IV	ACGT	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	841, 940, 1058
HpyF3I	CTNAG	4 cut(s)	530, 820, 1184, 1302
HpySE526I	ACGT	1 cut(s)	311
Hsp92II	CATG	9 cut(s)	269, 281, 322, 1014, 1018, 1098, 1147, 1234, 1243
Kzo9I	GATC	2 cut(s)	169, 868
Lsp1109I	GCAGC	8 cut(s)	10, 388, 502, 534, 751, 1019, 1098, 1379
LweI	GCATC	2 cut(s)	10, 1039
MaeI	CTAG	3 cut(s)	189, 384, 1314
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	4 cut(s)	314, 1139, 1187, 1323
MalI	GATC	2 cut(s)	171, 870
MboI	GATC	2 cut(s)	169, 868
MboII	GAAGA	7 cut(s)	284, 608, 878, 1043, 1058, 1409, 1414
MfeI	CAATTG	2 cut(s)	584, 1161
MflI	RGATCY	1 cut(s)	868
MhlI	GDGCHC	2 cut(s)	137, 1026
MlyI	GAGTC	2 cut(s)	103, 374
MmeI	TCCRAC	1 cut(s)	1080
MnlI	CCTC	8 cut(s)	44, 136, 253, 536, 574, 889, 1021, 1144
Mph1103I	ATGCAT	1 cut(s)	1016
MseI	TTAA	9 cut(s)	390, 479, 732, 798, 914, 1119, 1208, 1220, 1251
MslI	CAYNNNNRTG	1 cut(s)	657
MspA1I	CMGCKG	1 cut(s)	788
MspCI	CTTAAG	1 cut(s)	478
MunI	CAATTG	2 cut(s)	584, 1161
Mva1269I	GAATGC	1 cut(s)	1063
MwoI	GCNNNNNNNGC	3 cut(s)	841, 940, 1058
NcoI	CCATGG	1 cut(s)	1094
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	2 cut(s)	169, 868
NlaIII	CATG	9 cut(s)	269, 281, 322, 1014, 1018, 1098, 1147, 1234, 1243
NmeAIII	GCCGAG	1 cut(s)	919
NmuCI	GTSAC	2 cut(s)	314, 1187
NsiI	ATGCAT	1 cut(s)	1016
NspI	RCATGY	2 cut(s)	1014, 1018
NspV	TTCGAA	1 cut(s)	73
PaeI	GCATGC	1 cut(s)	1014
PagI	TCATGA	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	709
PcsI	WCGNNNNNNNCGW	1 cut(s)	891
PctI	GAATGC	1 cut(s)	1063
PfeI	GAWTC	5 cut(s)	322, 337, 559, 791, 951
PkrI	GCNGC	9 cut(s)	25, 403, 492, 524, 766, 1009, 1088, 1369, 1425
PleI	GAGTC	2 cut(s)	102, 374
PpsI	GAGTC	2 cut(s)	102, 374
PsiI	TTATAA	1 cut(s)	1432
PsuI	RGATCY	1 cut(s)	868
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	8 cut(s)	219, 276, 582, 691, 753, 1177, 1341, 1356
RsaNI	GTAC	8 cut(s)	218, 275, 581, 690, 752, 1176, 1340, 1355
RseI	CAYNNNNRTG	1 cut(s)	657
SaqAI	TTAA	9 cut(s)	390, 479, 732, 798, 914, 1119, 1208, 1220, 1251
SatI	GCNGC	9 cut(s)	24, 402, 491, 523, 765, 1008, 1087, 1368, 1424
Sau3AI	GATC	2 cut(s)	169, 868
ScaI	AGTACT	1 cut(s)	691
SchI	GAGTC	2 cut(s)	103, 374
SduI	GDGCHC	2 cut(s)	137, 1026
SfaNI	GCATC	2 cut(s)	10, 1039
SfcI	CTRYAG	1 cut(s)	117
SfuI	TTCGAA	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	657
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
SphI	GCATGC	1 cut(s)	1014
SseBI	AGGCCT	1 cut(s)	709
SspMI	CTAG	3 cut(s)	189, 384, 1314
StuI	AGGCCT	1 cut(s)	709
StyI	CCWWGG	1 cut(s)	1094
TaaI	ACNGT	7 cut(s)	16, 121, 212, 689, 751, 1202, 1257
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	4 cut(s)	73, 97, 151, 675
TatI	WGTACW	6 cut(s)	274, 580, 689, 751, 1175, 1354
TfiI	GAWTC	5 cut(s)	322, 337, 559, 791, 951
Tru1I	TTAA	9 cut(s)	390, 479, 732, 798, 914, 1119, 1208, 1220, 1251
Tru9I	TTAA	9 cut(s)	390, 479, 732, 798, 914, 1119, 1208, 1220, 1251
TscAI	CASTG	2 cut(s)	460, 1207
TseFI	GTSAC	2 cut(s)	314, 1187
TseI	GCWGC	9 cut(s)	23, 401, 490, 522, 764, 1007, 1086, 1367, 1423
Tsp45I	GTSAC	2 cut(s)	314, 1187
TspDTI	ATGAA	6 cut(s)	254, 350, 989, 1128, 1160, 1290
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	2 cut(s)	460, 1207
Vha464I	CTTAAG	1 cut(s)	478
XagI	CCTNNNNNAGG	1 cut(s)	974
XapI	RAATTY	2 cut(s)	1040, 1405
XbaI	TCTAGA	1 cut(s)	383
XceI	RCATGY	2 cut(s)	1014, 1018
XspI	CTAG	3 cut(s)	189, 384, 1314
ZrmI	AGTACT	1 cut(s)	691
Zsp2I	ATGCAT	1 cut(s)	1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.