Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010866

Physical Location & Seq

Genomic Coordinates Forward (+)

55270675 .. 55274913

Gene Structure 4239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG467400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2721 bp

ATGGCAGCCTCAGTCCAGCAGAACCGGCAGTTTCCTCACATCGACCCCGCCTTAAACGGCGTCGTCCGCTCCTCTTTCAAATCAAGTACTCCCAACCGCCACTTCCAAGACATCACTACTCCCCCGAAAATCTCGGCCCCGATCGATGACTACGACGAGTCGTCCTCCAGCGACGACGAAAACGACGAGAGCATCGTAGAGTACATGGATTTGGTCCGGAGAGGCAACAGAGAATTAGAGCCGTCGATCTTGGACCCCAGAGATGAGGCCACGTCAGACAGCTGGGTGGAGCGCAACCCCAGCATGGTCCGCCTCACAGGGAAACACCCCTTCAACTCGGAGCCGCCGCTCAGCCGCCTCATGCACCACGGCTTCATCACTCCGGTCCCACTCCACTACGTCCGCAACCACGGCGTCGTCCCCAAGGCCACGTGGCACGACTGGACCGTCGAGGTCACCGGCCTCGTCAAGCGGCCCGCCCGGTTCACCATGGACCAGCTCACCACCGAGTTTCGCGCCCGCGAGCTCCCCGTCACCCTCGTCTGCGCGGGAAACCGCCGCAAGGAGCAGAACATGGTGAAGCAGACGGTCGGATTCAACTGGGGCGCCGCCGGCATCTCCACCTCCGTCTGGCGCGGCGTGCGCCTCCGCGACGTCCTCAAGCGGTGCGGGATCTACAGCCGCAAAGGCGGCGCCCTCAACGTGTGCTTCGAAGGCGCCGAGGACCTGCCAGGTGGCGGTGGCTCCAAGTACGCCACCAGTCTGAGAAAAGAGGTCGCCATGGACGAGAGCAGGGACATCATACTTGCTTACATGCAAAACGGCGAGCGTTTGGCCCCCGATCACGGGTTTCCGGTTCGGGTGATCATACCCGGATTCATAGGGGGCCGGATGGTGAAATGGCTTAAACGCATCGTCGTGACGACGAAGGAGTCGGACTGTTATTATCATTACAAGGACAACAGGGTCCTTCCCTCGCATGTTGATGCCGAGCTGGCCAACGCTGAAGCATGGTGGTACAAGCCGGAGTACATAATCAACGAGCTGAACATAAACTCGGTCATTACGACGCCGTCTCACGAGGAGATATTGTCGATAAACTCGTGGACGAGGCCGTACACCCTCAAAGGCTACGCATATTCCGGAGGGGGTAAGAAAGTGACACGAGTGGAGGTGACTCTAGATGGTGGGGAGACCTGGCACGTCTGCAATCTGGACCACCAAGAGAAGCCGAACAAGTACGGGAAATACTGGTGCTGGTGCTTCTGGTCACTGGACGTGGAAGTGCTCAACTTACTGGTAGCCAAAGAGATTGCGGTGAGGGCTTGGGACGAAACCCACAACACTCAGCCCGAAAAGCTCATCTGGAATGTCATGGGAATGATGAACAACTGTTGGTTCCGAGTGAAAATCAATGTGTTGCCACACAGAGGAGAGATTGGAATAGTGTTTGAGCATCCAACCAAACCCGGAAACCAATCCGGCGGGTGGATGGCAAAAGAGAGACGCTTGGAGACCGAATCCAACGCAACCCTCAAGAAGAGCGTCTCTTCACCCTTCATGAACACTTCATCCAAGGTTTACTCAATGTCCGAAGTCAAGAGGCATAACACCCCTCAGTCTACATGGATTGTTGTCCACGGTCACGTCTACGACTGCACTAAATTCATCAATGACCACCCCGGCGGTGCTGATAGCATTTTGATCAATGCTGGAACAGATTGCACCGAAGAGTTTGAAGCAATCCATTCCGACAAGGCCAAGAAAATGCTTGAGGAATATAGAATAGGCGAGGTGGTCGGTACCACAGGTTACGCCTCGGATTCTAGCTCCCCTAATAATACCGTCCATGGGCCACCAAGAATATCAACTGTGGATTCTATGTCTTCTCTTACGAATGTTTTGGCTCCTATCAAAGAAATCACACTAAAAAGCGTCGCGCTCAATCCGCGTGAGAAAATTCCATGCAAGCTTGTGACCAAGACCTCGATTTCACATGACGTGAGGGTATTCAGATTTGCATTGCCTTCAGAAGACCAAGGTCTAGGGTTGCCAGTGGGCAAGCACATATTCTTGTGTGCTAAAATTGAGGGCAAGCTTTGCATGAGGGCTTACACTCCAACCAGCTCCATTGATGAAGTTGGGTATTTTGATCTGGTGGTCAAGGTCTACTTTAAGAATGTGCACCCTCGGTTCCCTAATGGTGGGCTCATGTCACAGTACTTGGACTCTCTCCCAATCGGGTCGGCTCTAGACGTGAAGGGTCCATTGGGTCACATAGAGTACACCGGTAAAGGTAACTTTTTGGTCCACGGTAAACCCAAGTTTGCAAAGAAACTCGCCATGATCGCCGGGGGGACGGGGATCACACCCATTTACCAAGTAGCACAAGCCATCCTGAAAGACCCGGAGGACGACACCGAAATGCACGTCGTATATGCAAACCAAACCGAAGAGGACATTTTGTTGAGGGAAGAGCTTGATGGTTGGGCTAAGGAGCATGAGAGGTTCAATGTGTGGTATGTGGTGTCGAATGGTAAGGAAGGCTGGGAATACAGTGTGGGATACATCACGGAGAGTATTCTGAGGGAGCATGTTCCTGATGGATCAGACGGTTCTCTTGCGTTGGTGTGCGGGCCCCCACCGATGATCCAATTTGCCGTGCAGCCCAATCTGGAGAAGCTGAACTATGATGTCAAGAATTCGTTGCTGATATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006082 GO:0006807 GO:0006809 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009703 GO:0009987 GO:0016020 GO:0016491 GO:0016661 GO:0017144 GO:0034641 GO:0042126 GO:0042128 GO:0042133 GO:0042136 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046209 GO:0046857 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0071941 GO:0071944 GO:0072593 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00910 ko01120 map00910 map01120

Pfam Domains

Protein Families

Cyt-b5 FAD_binding_6 Mo-co_dimer NAD_binding_1 Oxidored_molyb

Protein Analysis

906

Amino Acids

101.78

Weight (kDa)

6.54

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_molyb	PF00174	137 - 316	1.1e-55	Oxidoreductase molybdopterin binding domain
Mo-co_dimer	PF03404	344 - 473	4.1e-58	Mo-co oxidoreductase dimerisation domain
Cyt-b5	PF00173	530 - 599	1.3e-27	Cytochrome b5-like Heme/Steroid binding domain
FAD_binding_6	PF00970	656 - 762	2.1e-37	Oxidoreductase FAD-binding domain
NAD_binding_1	PF00175	782 - 888	2.7e-35	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37130 AT1G77760
fragaria_vesca	FvH4_5g39010
malus_domestica	MD08G1172400.v1.1 MD15G1357900.v1.1
prunus_persica	Prupe.1G505400_v2.0.a1
pyrus_communis	pycom08g14700 pycom15g32000
rosa_chinensis	RchiOBHm_Chr7g0240971
rosa_laevigata	RLG00000000608
rosa_multiflora	Rmu_co8418311.1_g000001 Rmu_sc0041887.1_g000001 Rmu_ssc0000392.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219350
rosa_rugosa	Rorug07G0341100
rosa_samantha	Rh7AG495900 Rh7BG467400 Rh7CG513400 Rh7DG480400
rosa_wichuraiana	Rw7G041900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	446, 931, 965
AatII	GACGTC	1 cut(s)	657
Acc36I	ACCTGC	1 cut(s)	735
Acc65I	GGTACC	1 cut(s)	1802
AccB1I	GGYRCC	4 cut(s)	605, 692, 716, 1802
AccBSI	CCGCTC	2 cut(s)	69, 349
AccI	GTMKAC	3 cut(s)	1622, 1650, 2169
AccII	CGCG	7 cut(s)	516, 522, 548, 636, 651, 1940, 1951
AccIII	TCCGGA	2 cut(s)	216, 1142
AclWI	GGATC	4 cut(s)	680, 2372, 2614, 2644
AcoI	YGGCCR	1 cut(s)	996
AcsI	RAATTY	3 cut(s)	1664, 1959, 2701
AcuI	CTGAAG	2 cut(s)	1026, 2013
AcvI	CACGTG	1 cut(s)	432
AcyI	GRCGYC	7 cut(s)	60, 414, 606, 654, 693, 717, 1070
AflIII	ACRYGT	1 cut(s)	702
AgeI	ACCGGT	1 cut(s)	2288
AgsI	TTSAA	5 cut(s)	79, 334, 598, 1739, 2512
AhdI	GACNNNNNGTC	1 cut(s)	160
AjiI	CACGTC	7 cut(s)	273, 1204, 1279, 1648, 2002, 2257, 2431
AjnI	CCWGG	2 cut(s)	730, 1196
AjuI	GAANNNNNNNTTGG	4 cut(s)	86, 118, 2252, 2284
AloI	GAACNNNNNNTCC	2 cut(s)	1556, 1588
Alw21I	GWGCWC	3 cut(s)	528, 1290, 2187
Alw26I	GTCTC	5 cut(s)	1080, 1187, 1498, 1508, 1552
Alw44I	GTGCAC	1 cut(s)	2183
AlwI	GGATC	4 cut(s)	680, 2372, 2614, 2644
Aor13HI	TCCGGA	2 cut(s)	216, 1142
ApaI	GGGCCC	1 cut(s)	2640
ApaLI	GTGCAC	1 cut(s)	2183
ApeKI	GCWGC	2 cut(s)	5, 2665
ApoI	RAATTY	3 cut(s)	1664, 1959, 2701
ArsI	GACNNNNNNTTYG	2 cut(s)	2415, 2447
AsiGI	ACCGGT	1 cut(s)	2288
Asp718I	GGTACC	1 cut(s)	1802
AspLEI	GCGC	9 cut(s)	294, 518, 548, 608, 636, 645, 695, 719, 1942
AsuC2I	CCSGG	6 cut(s)	481, 873, 1470, 1683, 2353, 2408
AsuII	TTCGAA	1 cut(s)	711
BaeGI	GKGCMC	2 cut(s)	2187, 2640
BalI	TGGCCA	1 cut(s)	998
BanI	GGYRCC	4 cut(s)	605, 692, 716, 1802
BanII	GRGCYC	3 cut(s)	528, 2211, 2640
BauI	CACGAG	3 cut(s)	1079, 1102, 1164
BbrPI	CACGTG	1 cut(s)	432
BbsI	GAAGAC	2 cut(s)	1878, 2040
Bbv12I	GWGCWC	3 cut(s)	528, 1290, 2187
BbvI	GCAGC	2 cut(s)	17, 2677
BccI	CCATC	6 cut(s)	886, 1178, 1486, 2402, 2477, 2597
BceAI	ACGGC	8 cut(s)	73, 226, 385, 427, 838, 1057, 1099, 2645
BciT130I	CCWGG	2 cut(s)	732, 1198
BciVI	GTATCC	1 cut(s)	2558
BclI	TGATCA	2 cut(s)	864, 1704
BcnI	CCSGG	6 cut(s)	481, 873, 1470, 1683, 2353, 2408
BcoDI	GTCTC	5 cut(s)	1080, 1187, 1498, 1508, 1552
BfaI	CTAG	4 cut(s)	1181, 1827, 2045, 2252
BfmI	CTRYAG	1 cut(s)	676
BfoI	RGCGCY	3 cut(s)	609, 696, 720
BfuAI	ACCTGC	1 cut(s)	735
BfuI	GTATCC	1 cut(s)	2558
BglI	GCCNNNNNGGC	2 cut(s)	687, 995
BlpI	GCTNAGC	1 cut(s)	350
BmcAI	AGTACT	2 cut(s)	88, 2222
Bme1390I	CCNGG	8 cut(s)	481, 732, 873, 1198, 1470, 1683, 2353, 2408
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmgBI	CACGTC	7 cut(s)	273, 1204, 1279, 1648, 2002, 2257, 2431
BmrFI	CCNGG	8 cut(s)	481, 732, 873, 1198, 1470, 1683, 2353, 2408
BmrI	ACTGGG	1 cut(s)	610
BmsI	GCATC	5 cut(s)	201, 624, 921, 976, 1465
BmuI	ACTGGG	1 cut(s)	610
BoxI	GACNNNNGTC	1 cut(s)	2040
BpiI	GAAGAC	2 cut(s)	1878, 2040
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	2 cut(s)	151, 2696
Bpu10I	CCTNAGC	1 cut(s)	2493
Bpu1102I	GCTNAGC	1 cut(s)	350
Bpu14I	TTCGAA	1 cut(s)	711
BpuEI	CTTGAG	3 cut(s)	644, 1520, 1793
BpuMI	CCSGG	6 cut(s)	481, 873, 1470, 1683, 2353, 2408
Bsa29I	ATCGAT	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	432
BsaHI	GRCGYC	7 cut(s)	60, 414, 606, 654, 693, 717, 1070
BsaI	GGTCTC	2 cut(s)	1187, 1508
BsaWI	WCCGGW	5 cut(s)	216, 382, 853, 1142, 2288
BsaXI	ACNNNNNCTCC	2 cut(s)	1076, 1106
Bse118I	RCCGGY	4 cut(s)	24, 458, 611, 2288
Bse1I	ACTGG	7 cut(s)	446, 605, 759, 1256, 1278, 1302, 2054
Bse3DI	GCAATG	1 cut(s)	2021
BseAI	TCCGGA	2 cut(s)	216, 1142
BseBI	CCWGG	2 cut(s)	732, 1198
BseCI	ATCGAT	1 cut(s)	144
BseGI	GGATG	5 cut(s)	897, 1456, 1497, 1571, 2394
BseMI	GCAATG	1 cut(s)	2021
BseMII	CTCAG	6 cut(s)	24, 364, 755, 1361, 1631, 2576
BseNI	ACTGG	7 cut(s)	446, 605, 759, 1256, 1278, 1302, 2054
BseRI	GAGGAG	3 cut(s)	61, 1097, 1446
BseSI	GKGCMC	2 cut(s)	2187, 2640
BseXI	GCAGC	2 cut(s)	17, 2677
BseYI	CCCAGC	3 cut(s)	282, 299, 2547
BsgI	GTGCAG	2 cut(s)	1642, 2684
Bsh1236I	CGCG	7 cut(s)	516, 522, 548, 636, 651, 1940, 1951
Bsh1285I	CGRYCG	2 cut(s)	144, 591
BshNI	GGYRCC	4 cut(s)	605, 692, 716, 1802
BshTI	ACCGGT	1 cut(s)	2288
BshVI	ATCGAT	1 cut(s)	144
BsiEI	CGRYCG	2 cut(s)	144, 591
BsiHKAI	GWGCWC	3 cut(s)	528, 1290, 2187
BslFI	GGGAC	5 cut(s)	371, 404, 809, 1343, 2371
BsmAI	GTCTC	5 cut(s)	1080, 1187, 1498, 1508, 1552
BsmBI	CGTCTC	3 cut(s)	1080, 1498, 1552
BsmFI	GGGAC	5 cut(s)	371, 404, 809, 1343, 2371
Bso31I	GGTCTC	2 cut(s)	1187, 1508
Bsp119I	TTCGAA	1 cut(s)	711
Bsp120I	GGGCCC	1 cut(s)	2636
Bsp1286I	GDGCHC	5 cut(s)	528, 1290, 2187, 2211, 2640
Bsp13I	TCCGGA	2 cut(s)	216, 1142
Bsp1720I	GCTNAGC	1 cut(s)	350
Bsp19I	CCATGG	3 cut(s)	489, 780, 1849
BspCNI	CTCAG	6 cut(s)	23, 363, 756, 1360, 1630, 2577
BspDI	ATCGAT	1 cut(s)	144
BspEI	TCCGGA	2 cut(s)	216, 1142
BspFNI	CGCG	7 cut(s)	516, 522, 548, 636, 651, 1940, 1951
BspHI	TCATGA	1 cut(s)	1560
BspMI	ACCTGC	1 cut(s)	735
BspPI	GGATC	4 cut(s)	680, 2372, 2614, 2644
BspQI	GCTCTTC	2 cut(s)	1535, 2469
BspT104I	TTCGAA	1 cut(s)	711
BspT107I	GGYRCC	4 cut(s)	605, 692, 716, 1802
BspTNI	GGTCTC	2 cut(s)	1187, 1508
BsrBI	CCGCTC	2 cut(s)	69, 349
BsrDI	GCAATG	1 cut(s)	2021
BsrFI	RCCGGY	4 cut(s)	24, 458, 611, 2288
BsrI	ACTGG	7 cut(s)	446, 605, 759, 1256, 1278, 1302, 2054
BssAI	RCCGGY	4 cut(s)	24, 458, 611, 2288
BssNI	GRCGYC	7 cut(s)	60, 414, 606, 654, 693, 717, 1070
BssSI	CACGAG	3 cut(s)	1079, 1102, 1164
BssT1I	CCWWGG	6 cut(s)	423, 489, 780, 1575, 1849, 2038
Bst2BI	CACGAG	3 cut(s)	1079, 1102, 1164
Bst2UI	CCWGG	2 cut(s)	732, 1198
Bst6I	CTCTTC	5 cut(s)	1535, 1555, 1725, 2448, 2469
BstACI	GRCGYC	7 cut(s)	60, 414, 606, 654, 693, 717, 1070
BstAPI	GCANNNNNTGC	1 cut(s)	2100
BstBAI	YACGTR	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	711
BstDEI	CTNAG	7 cut(s)	10, 350, 764, 1347, 1617, 2493, 2585
BstDSI	CCRYGG	7 cut(s)	367, 409, 489, 780, 1639, 1849, 2311
BstEII	GGTNACC	1 cut(s)	454
BstF5I	GGATG	5 cut(s)	897, 1456, 1497, 1571, 2394
BstFNI	CGCG	7 cut(s)	516, 522, 548, 636, 651, 1940, 1951
BstH2I	RGCGCY	3 cut(s)	609, 696, 720
BstHHI	GCGC	9 cut(s)	294, 518, 548, 608, 636, 645, 695, 719, 1942
BstMAI	GTCTC	5 cut(s)	1080, 1187, 1498, 1508, 1552
BstMCI	CGRYCG	2 cut(s)	144, 591
BstNI	CCWGG	2 cut(s)	732, 1198
BstNSI	RCATGY	3 cut(s)	817, 983, 2597
BstPAI	GACNNNNGTC	1 cut(s)	2040
BstPI	GGTNACC	1 cut(s)	454
BstSCI	CCNGG	8 cut(s)	479, 730, 871, 1196, 1468, 1681, 2351, 2406
BstSFI	CTRYAG	1 cut(s)	676
BstSLI	GKGCMC	2 cut(s)	2187, 2640
BstUI	CGCG	7 cut(s)	516, 522, 548, 636, 651, 1940, 1951
BstV1I	GCAGC	2 cut(s)	17, 2677
BstV2I	GAAGAC	2 cut(s)	1878, 2040
BstX2I	RGATCY	1 cut(s)	672
BstYI	RGATCY	1 cut(s)	672
Bsu15I	ATCGAT	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	2558
BsuTUI	ATCGAT	1 cut(s)	144
BtgI	CCRYGG	7 cut(s)	367, 409, 489, 780, 1639, 1849, 2311
BtrI	CACGTC	7 cut(s)	273, 1204, 1279, 1648, 2002, 2257, 2431
BtsCI	GGATG	5 cut(s)	897, 1456, 1497, 1571, 2394
BtsIMutI	CAGTG	3 cut(s)	1271, 2061, 2563
BveI	ACCTGC	1 cut(s)	735
CciI	TCATGA	1 cut(s)	1560
CfoI	GCGC	9 cut(s)	294, 518, 548, 608, 636, 645, 695, 719, 1942
Cfr10I	RCCGGY	4 cut(s)	24, 458, 611, 2288
ClaI	ATCGAT	1 cut(s)	144
CseI	GACGC	6 cut(s)	49, 403, 1078, 1515, 1534, 1924
CspAI	ACCGGT	1 cut(s)	2288
DdeI	CTNAG	7 cut(s)	10, 350, 764, 1347, 1617, 2493, 2585
DinI	GGCGCC	3 cut(s)	607, 694, 718
DrdI	GACNNNNNNGTC	3 cut(s)	446, 931, 965
DriI	GACNNNNNGTC	1 cut(s)	160
DseDI	GACNNNNNNGTC	3 cut(s)	446, 931, 965
EaeI	YGGCCR	1 cut(s)	996
Eam1104I	CTCTTC	5 cut(s)	1535, 1555, 1725, 2448, 2469
Eam1105I	GACNNNNNGTC	1 cut(s)	160
EarI	CTCTTC	5 cut(s)	1535, 1555, 1725, 2448, 2469
EciI	GGCGGA	1 cut(s)	299
Ecl136II	GAGCTC	1 cut(s)	526
Eco130I	CCWWGG	6 cut(s)	423, 489, 780, 1575, 1849, 2038
Eco24I	GRGCYC	3 cut(s)	528, 2211, 2640
Eco31I	GGTCTC	2 cut(s)	1187, 1508
Eco53kI	GAGCTC	1 cut(s)	526
Eco57I	CTGAAG	2 cut(s)	1026, 2013
Eco72I	CACGTG	1 cut(s)	432
Eco91I	GGTNACC	1 cut(s)	454
EcoICRI	GAGCTC	1 cut(s)	526
EcoO109I	RGGNCCY	3 cut(s)	724, 967, 2637
EcoO65I	GGTNACC	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	2701
EcoRII	CCWGG	2 cut(s)	730, 1196
EcoT14I	CCWWGG	6 cut(s)	423, 489, 780, 1575, 1849, 2038
EcoT38I	GRGCYC	3 cut(s)	528, 2211, 2640
EgeI	GGCGCC	3 cut(s)	607, 694, 718
EheI	GGCGCC	3 cut(s)	607, 694, 718
ErhI	CCWWGG	6 cut(s)	423, 489, 780, 1575, 1849, 2038
Esp3I	CGTCTC	3 cut(s)	1080, 1498, 1552
FalI	AAGNNNNNCTT	2 cut(s)	2156, 2188
FaqI	GGGAC	5 cut(s)	371, 404, 809, 1343, 2371
FauI	CCCGC	7 cut(s)	55, 484, 527, 541, 662, 1478, 2627
FbaI	TGATCA	2 cut(s)	864, 1704
FblI	GTMKAC	3 cut(s)	1622, 1650, 2169
FokI	GGATG	5 cut(s)	904, 1443, 1504, 1558, 2381
FriOI	GRGCYC	3 cut(s)	528, 2211, 2640
FspBI	CTAG	4 cut(s)	1181, 1827, 2045, 2252
GlaI	GCGC	9 cut(s)	293, 517, 547, 607, 635, 644, 694, 718, 1941
GsaI	CCCAGC	3 cut(s)	286, 303, 2551
GsuI	CTGGAG	2 cut(s)	151, 2696
HaeII	RGCGCY	3 cut(s)	609, 696, 720
HgaI	GACGC	6 cut(s)	49, 403, 1078, 1515, 1534, 1924
HhaI	GCGC	9 cut(s)	294, 518, 548, 608, 636, 645, 695, 719, 1942
Hin1I	GRCGYC	7 cut(s)	60, 414, 606, 654, 693, 717, 1070
Hin6I	GCGC	9 cut(s)	292, 516, 546, 606, 634, 643, 693, 717, 1940
HinP1I	GCGC	9 cut(s)	292, 516, 546, 606, 634, 643, 693, 717, 1940
HindIII	AAGCTT	2 cut(s)	1970, 2096
HinfI	GANTC	9 cut(s)	158, 594, 876, 932, 1177, 1520, 1823, 1877, 2228
HpyAV	CCTTC	8 cut(s)	340, 707, 922, 980, 1567, 2037, 2254, 2537
HpyF3I	CTNAG	7 cut(s)	10, 350, 764, 1347, 1617, 2493, 2585
Hsp92I	GRCGYC	7 cut(s)	60, 414, 606, 654, 693, 717, 1070
HspAI	GCGC	9 cut(s)	292, 516, 546, 606, 634, 643, 693, 717, 1940
KasI	GGCGCC	3 cut(s)	605, 692, 716
Kpn2I	TCCGGA	2 cut(s)	216, 1142
KpnI	GGTACC	1 cut(s)	1806
KroI	GCCGGC	1 cut(s)	611
KroNI	GCCGGC	1 cut(s)	613
Ksp22I	TGATCA	2 cut(s)	864, 1704
LguI	GCTCTTC	2 cut(s)	1535, 2469
Lsp1109I	GCAGC	2 cut(s)	17, 2677
LweI	GCATC	5 cut(s)	201, 624, 921, 976, 1465
MaeI	CTAG	4 cut(s)	1181, 1827, 2045, 2252
MbiI	CCGCTC	2 cut(s)	69, 349
MboII	GAAGA	7 cut(s)	1542, 1552, 1742, 1878, 2045, 2465, 2486
MflI	RGATCY	1 cut(s)	672
MhlI	GDGCHC	5 cut(s)	528, 1290, 2187, 2211, 2640
MlsI	TGGCCA	1 cut(s)	998
MluCI	AATT	6 cut(s)	233, 1664, 1959, 2085, 2654, 2701
MluNI	TGGCCA	1 cut(s)	998
Mly113I	GGCGCC	3 cut(s)	606, 693, 717
MlyI	GAGTC	4 cut(s)	167, 941, 1171, 2222
MmeI	TCCRAC	6 cut(s)	571, 915, 1484, 1548, 1776, 2144
Mox20I	TGGCCA	1 cut(s)	998
MroI	TCCGGA	2 cut(s)	216, 1142
MroNI	GCCGGC	1 cut(s)	611
MscI	TGGCCA	1 cut(s)	998
MseI	TTAA	3 cut(s)	53, 906, 2175
MslI	CAYNNNNRTG	4 cut(s)	917, 984, 1379, 2423
Msp20I	TGGCCA	1 cut(s)	998
MspA1I	CMGCKG	1 cut(s)	282
MspR9I	CCNGG	8 cut(s)	481, 732, 873, 1198, 1470, 1683, 2353, 2408
MvaI	CCWGG	2 cut(s)	732, 1198
MvnI	CGCG	7 cut(s)	516, 522, 548, 636, 651, 1940, 1951
NaeI	GCCGGC	1 cut(s)	613
NarI	GGCGCC	3 cut(s)	606, 693, 717
NciI	CCSGG	6 cut(s)	481, 873, 1470, 1683, 2353, 2408
NcoI	CCATGG	3 cut(s)	489, 780, 1849
NgoMIV	GCCGGC	1 cut(s)	611
NmeAIII	GCCGAG	3 cut(s)	113, 745, 1015
NspI	RCATGY	3 cut(s)	817, 983, 2597
NspV	TTCGAA	1 cut(s)	711
PagI	TCATGA	1 cut(s)	1560
PciSI	GCTCTTC	2 cut(s)	1535, 2469
PdiI	GCCGGC	1 cut(s)	613
PfeI	GAWTC	5 cut(s)	594, 876, 1520, 1823, 1877
PflFI	GACNNNGTC	1 cut(s)	1072
PinAI	ACCGGT	1 cut(s)	2288
Ple19I	CGATCG	1 cut(s)	144
PleI	GAGTC	4 cut(s)	166, 940, 1171, 2222
PluTI	GGCGCC	3 cut(s)	609, 696, 720
PmaCI	CACGTG	1 cut(s)	432
PmlI	CACGTG	1 cut(s)	432
PpsI	GAGTC	4 cut(s)	166, 940, 1171, 2222
Ppu21I	YACGTR	1 cut(s)	432
PpuMI	RGGWCCY	2 cut(s)	724, 967
PshAI	GACNNNNGTC	1 cut(s)	2040
Psp124BI	GAGCTC	1 cut(s)	528
Psp5II	RGGWCCY	2 cut(s)	724, 967
Psp6I	CCWGG	2 cut(s)	730, 1196
PspCI	CACGTG	1 cut(s)	432
PspEI	GGTNACC	1 cut(s)	454
PspFI	CCCAGC	3 cut(s)	282, 299, 2547
PspGI	CCWGG	2 cut(s)	730, 1196
PspOMI	GGGCCC	1 cut(s)	2636
PspPPI	RGGWCCY	2 cut(s)	724, 967
PsuI	RGATCY	1 cut(s)	672
PsyI	GACNNNGTC	1 cut(s)	1072
PvuI	CGATCG	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	282
RseI	CAYNNNNRTG	4 cut(s)	917, 984, 1379, 2423
SacI	GAGCTC	1 cut(s)	528
SapI	GCTCTTC	2 cut(s)	1535, 2469
SaqAI	TTAA	3 cut(s)	53, 906, 2175
ScaI	AGTACT	2 cut(s)	88, 2222
SchI	GAGTC	4 cut(s)	167, 941, 1171, 2222
ScrFI	CCNGG	8 cut(s)	481, 732, 873, 1198, 1470, 1683, 2353, 2408
SduI	GDGCHC	5 cut(s)	528, 1290, 2187, 2211, 2640
SfaNI	GCATC	5 cut(s)	201, 624, 921, 976, 1465
SfcI	CTRYAG	1 cut(s)	676
SfoI	GGCGCC	3 cut(s)	607, 694, 718
SfuI	TTCGAA	1 cut(s)	711
SmiMI	CAYNNNNRTG	4 cut(s)	917, 984, 1379, 2423
SmlI	CTYRAG	3 cut(s)	659, 1535, 1772
SmoI	CTYRAG	3 cut(s)	659, 1535, 1772
Sse9I	AATT	6 cut(s)	233, 1664, 1959, 2085, 2654, 2701
SspDI	GGCGCC	3 cut(s)	605, 692, 716
SspMI	CTAG	4 cut(s)	1181, 1827, 2045, 2252
SstI	GAGCTC	1 cut(s)	528
StyD4I	CCNGG	8 cut(s)	479, 730, 871, 1196, 1468, 1681, 2351, 2406
StyI	CCWWGG	6 cut(s)	423, 489, 780, 1575, 1849, 2038
TaqI	TCGA	8 cut(s)	42, 144, 245, 450, 711, 1094, 1988, 2531
TaqII	GACCGA	2 cut(s)	1048, 1532
TasI	AATT	6 cut(s)	233, 1664, 1959, 2085, 2654, 2701
TatI	WGTACW	5 cut(s)	86, 201, 1029, 2220, 2283
TauI	GCSGC	9 cut(s)	346, 349, 357, 475, 561, 611, 639, 684, 693
TfiI	GAWTC	5 cut(s)	594, 876, 1520, 1823, 1877
Tru1I	TTAA	3 cut(s)	53, 906, 2175
Tru9I	TTAA	3 cut(s)	53, 906, 2175
TscAI	CASTG	3 cut(s)	1278, 2061, 2563
TseI	GCWGC	2 cut(s)	5, 2665
TspDTI	ATGAA	8 cut(s)	364, 868, 1400, 1549, 1560, 1577, 1657, 2151
TspGWI	ACGGA	2 cut(s)	616, 2588
TspRI	CASTG	3 cut(s)	1278, 2061, 2563
Tth111I	GACNNNGTC	1 cut(s)	1072
VneI	GTGCAC	1 cut(s)	2183
XapI	RAATTY	3 cut(s)	1664, 1959, 2701
XbaI	TCTAGA	2 cut(s)	1180, 2251
XceI	RCATGY	3 cut(s)	817, 983, 2597
XmiI	GTMKAC	3 cut(s)	1622, 1650, 2169
XspI	CTAG	4 cut(s)	1181, 1827, 2045, 2252
ZraI	GACGTC	1 cut(s)	655
ZrmI	AGTACT	2 cut(s)	88, 2222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.