Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g22960 |
| rosa_chinensis | RchiOBHm_Chr1g0368121 RchiOBHm_Chr1g0368141 RchiOBHm_Chr1g0368161 |
| rosa_laevigata | RLG00000027234 RLG00000027235 |
| rosa_multiflora | Rmu_sc0006814.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00270640 Rroxscaffold_4G00288840 |
| rosa_rugosa | Rorug01G0339000 |
| rosa_samantha | Rh1AG346000 Rh1AG346300 Rh1AG346500 Rh1BG308600 Rh1BG308800 Rh1DG340700 Rh1DG340900 Rh1DG341000 Rh7CG058500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 31, 260, 317, 565, 588 |
| AclWI | GGATC | 1 cut(s) | 413 |
| AcyI | GRCGYC | 1 cut(s) | 21 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 394, 612 |
| AflIII | ACRYGT | 1 cut(s) | 39 |
| AgsI | TTSAA | 4 cut(s) | 54, 101, 340, 428 |
| AjiI | CACGTC | 1 cut(s) | 42 |
| AluBI | AGCT | 2 cut(s) | 286, 302 |
| AluI | AGCT | 2 cut(s) | 286, 302 |
| Alw26I | GTCTC | 2 cut(s) | 191, 430 |
| AlwI | GGATC | 1 cut(s) | 413 |
| AoxI | GGCC | 1 cut(s) | 385 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 587, 619 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 93 |
| AsuC2I | CCSGG | 1 cut(s) | 247 |
| BanII | GRGCYC | 1 cut(s) | 144 |
| BbsI | GAAGAC | 1 cut(s) | 567 |
| BccI | CCATC | 4 cut(s) | 52, 82, 535, 614 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 251, 285 |
| BcnI | CCSGG | 1 cut(s) | 247 |
| BcoDI | GTCTC | 2 cut(s) | 191, 430 |
| BisI | GCNGC | 1 cut(s) | 32 |
| BlsI | GCNGC | 1 cut(s) | 33 |
| Bme1390I | CCNGG | 1 cut(s) | 247 |
| BmgBI | CACGTC | 1 cut(s) | 42 |
| BmiI | GGNNCC | 1 cut(s) | 617 |
| BmrFI | CCNGG | 1 cut(s) | 247 |
| BmsI | GCATC | 2 cut(s) | 382, 592 |
| BpiI | GAAGAC | 1 cut(s) | 567 |
| BpuMI | CCSGG | 1 cut(s) | 247 |
| BsaHI | GRCGYC | 1 cut(s) | 21 |
| BsaJI | CCNNGG | 1 cut(s) | 279 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 394, 612 |
| Bse118I | RCCGGY | 1 cut(s) | 618 |
| BseDI | CCNNGG | 1 cut(s) | 279 |
| BseGI | GGATG | 3 cut(s) | 63, 475, 583 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 394, 612 |
| BshFI | GGCC | 1 cut(s) | 387 |
| BsiSI | CCGG | 3 cut(s) | 246, 314, 619 |
| BslFI | GGGAC | 2 cut(s) | 262, 460 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 394, 612 |
| BsmAI | GTCTC | 2 cut(s) | 191, 430 |
| BsmFI | GGGAC | 2 cut(s) | 262, 460 |
| BsnI | GGCC | 1 cut(s) | 387 |
| Bsp1286I | GDGCHC | 1 cut(s) | 144 |
| Bsp143I | GATC | 3 cut(s) | 366, 405, 597 |
| BspACI | CCGC | 5 cut(s) | 31, 260, 317, 565, 588 |
| BspANI | GGCC | 1 cut(s) | 387 |
| BspLI | GGNNCC | 1 cut(s) | 617 |
| BspPI | GGATC | 1 cut(s) | 413 |
| BsrFI | RCCGGY | 1 cut(s) | 618 |
| BssAI | RCCGGY | 1 cut(s) | 618 |
| BssECI | CCNNGG | 1 cut(s) | 279 |
| BssMI | GATC | 3 cut(s) | 366, 405, 597 |
| BssNI | GRCGYC | 1 cut(s) | 21 |
| BssT1I | CCWWGG | 1 cut(s) | 279 |
| Bst4CI | ACNGT | 1 cut(s) | 383 |
| Bst6I | CTCTTC | 2 cut(s) | 341, 428 |
| BstACI | GRCGYC | 1 cut(s) | 21 |
| BstF5I | GGATG | 3 cut(s) | 63, 475, 583 |
| BstKTI | GATC | 3 cut(s) | 369, 408, 600 |
| BstMAI | GTCTC | 2 cut(s) | 191, 430 |
| BstMBI | GATC | 3 cut(s) | 366, 405, 597 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 148, 323 |
| BstSCI | CCNGG | 1 cut(s) | 245 |
| BstV2I | GAAGAC | 1 cut(s) | 567 |
| BsuRI | GGCC | 1 cut(s) | 387 |
| BtrI | CACGTC | 1 cut(s) | 42 |
| BtsCI | GGATG | 3 cut(s) | 63, 475, 583 |
| Cfr10I | RCCGGY | 1 cut(s) | 618 |
| CseI | GACGC | 1 cut(s) | 10 |
| CviAII | CATG | 5 cut(s) | 35, 78, 229, 493, 601 |
| CviJI | RGCY | 8 cut(s) | 49, 142, 245, 278, 286, 302, 387, 527 |
| CviKI_1 | RGCY | 8 cut(s) | 49, 142, 245, 278, 286, 302, 387, 527 |
| DpnI | GATC | 3 cut(s) | 368, 407, 599 |
| DpnII | GATC | 3 cut(s) | 366, 405, 597 |
| Eam1104I | CTCTTC | 2 cut(s) | 341, 428 |
| EarI | CTCTTC | 2 cut(s) | 341, 428 |
| EciI | GGCGGA | 1 cut(s) | 332 |
| Eco130I | CCWWGG | 1 cut(s) | 279 |
| Eco24I | GRGCYC | 1 cut(s) | 144 |
| EcoT14I | CCWWGG | 1 cut(s) | 279 |
| EcoT22I | ATGCAT | 2 cut(s) | 181, 328 |
| EcoT38I | GRGCYC | 1 cut(s) | 144 |
| ErhI | CCWWGG | 1 cut(s) | 279 |
| FaeI | CATG | 5 cut(s) | 38, 81, 232, 496, 604 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 81, 113, 446, 478 |
| FaqI | GGGAC | 2 cut(s) | 262, 460 |
| FatI | CATG | 5 cut(s) | 34, 77, 228, 492, 600 |
| FauI | CCCGC | 1 cut(s) | 595 |
| Fnu4HI | GCNGC | 1 cut(s) | 32 |
| FokI | GGATG | 3 cut(s) | 70, 462, 570 |
| FriOI | GRGCYC | 1 cut(s) | 144 |
| Fsp4HI | GCNGC | 1 cut(s) | 32 |
| GluI | GCNGC | 1 cut(s) | 32 |
| HaeIII | GGCC | 1 cut(s) | 387 |
| HapII | CCGG | 3 cut(s) | 246, 314, 619 |
| HgaI | GACGC | 1 cut(s) | 10 |
| Hin1I | GRCGYC | 1 cut(s) | 21 |
| Hin1II | CATG | 5 cut(s) | 38, 81, 232, 496, 604 |
| HincII | GTYRAC | 2 cut(s) | 70, 240 |
| HindII | GTYRAC | 2 cut(s) | 70, 240 |
| HinfI | GANTC | 4 cut(s) | 94, 333, 350, 448 |
| HpaII | CCGG | 3 cut(s) | 246, 314, 619 |
| Hpy166II | GTNNAC | 3 cut(s) | 70, 240, 307 |
| Hpy188I | TCNGA | 1 cut(s) | 397 |
| Hpy188III | TCNNGA | 4 cut(s) | 98, 364, 403, 610 |
| Hpy8I | GTNNAC | 3 cut(s) | 70, 240, 307 |
| Hpy99I | CGWCG | 3 cut(s) | 26, 29, 89 |
| HpyAV | CCTTC | 3 cut(s) | 60, 83, 524 |
| HpyCH4III | ACNGT | 1 cut(s) | 383 |
| HpyCH4IV | ACGT | 1 cut(s) | 41 |
| HpyCH4V | TGCA | 5 cut(s) | 179, 228, 326, 466, 496 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 148, 323 |
| HpySE526I | ACGT | 1 cut(s) | 41 |
| Hsp92I | GRCGYC | 1 cut(s) | 21 |
| Hsp92II | CATG | 5 cut(s) | 38, 81, 232, 496, 604 |
| Kzo9I | GATC | 3 cut(s) | 366, 405, 597 |
| LmnI | GCTCC | 1 cut(s) | 283 |
| LpnPI | CCDG | 2 cut(s) | 259, 327 |
| LweI | GCATC | 2 cut(s) | 382, 592 |
| MaeII | ACGT | 1 cut(s) | 41 |
| MaeIII | GTNAC | 2 cut(s) | 106, 471 |
| MalI | GATC | 3 cut(s) | 368, 407, 599 |
| MboI | GATC | 3 cut(s) | 366, 405, 597 |
| MboII | GAAGA | 6 cut(s) | 19, 328, 445, 550, 572, 607 |
| MhlI | GDGCHC | 1 cut(s) | 144 |
| MluCI | AATT | 2 cut(s) | 195, 419 |
| MlyI | GAGTC | 2 cut(s) | 327, 442 |
| MmeI | TCCRAC | 1 cut(s) | 316 |
| MnlI | CCTC | 4 cut(s) | 154, 450, 489, 606 |
| Mph1103I | ATGCAT | 2 cut(s) | 181, 328 |
| MroXI | GAANNNNTTC | 1 cut(s) | 93 |
| MseI | TTAA | 1 cut(s) | 182 |
| MspI | CCGG | 3 cut(s) | 246, 314, 619 |
| MspR9I | CCNGG | 1 cut(s) | 247 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 148, 323 |
| NciI | CCSGG | 1 cut(s) | 247 |
| NdeII | GATC | 3 cut(s) | 366, 405, 597 |
| NlaIII | CATG | 5 cut(s) | 38, 81, 232, 496, 604 |
| NlaIV | GGNNCC | 1 cut(s) | 617 |
| NmuCI | GTSAC | 2 cut(s) | 106, 471 |
| NsiI | ATGCAT | 2 cut(s) | 181, 328 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 18 |
| PdmI | GAANNNNTTC | 1 cut(s) | 93 |
| PfeI | GAWTC | 2 cut(s) | 94, 350 |
| PflFI | GACNNNGTC | 1 cut(s) | 235 |
| PkrI | GCNGC | 1 cut(s) | 33 |
| PleI | GAGTC | 2 cut(s) | 327, 442 |
| PpsI | GAGTC | 2 cut(s) | 327, 442 |
| PspN4I | GGNNCC | 1 cut(s) | 617 |
| PsyI | GACNNNGTC | 1 cut(s) | 235 |
| SaqAI | TTAA | 1 cut(s) | 182 |
| SatI | GCNGC | 1 cut(s) | 32 |
| Sau3AI | GATC | 3 cut(s) | 366, 405, 597 |
| SchI | GAGTC | 2 cut(s) | 327, 442 |
| ScrFI | CCNGG | 1 cut(s) | 247 |
| SduI | GDGCHC | 1 cut(s) | 144 |
| SetI | ASST | 6 cut(s) | 44, 69, 288, 304, 535, 551 |
| SfaNI | GCATC | 2 cut(s) | 382, 592 |
| Sse9I | AATT | 2 cut(s) | 195, 419 |
| SsiI | CCGC | 5 cut(s) | 31, 260, 317, 565, 588 |
| StyD4I | CCNGG | 1 cut(s) | 245 |
| StyI | CCWWGG | 1 cut(s) | 279 |
| TaaI | ACNGT | 1 cut(s) | 383 |
| TaiI | ACGT | 1 cut(s) | 44 |
| TaqI | TCGA | 4 cut(s) | 138, 193, 219, 331 |
| TasI | AATT | 2 cut(s) | 195, 419 |
| TauI | GCSGC | 1 cut(s) | 34 |
| TfiI | GAWTC | 2 cut(s) | 94, 350 |
| Tru1I | TTAA | 1 cut(s) | 182 |
| Tru9I | TTAA | 1 cut(s) | 182 |
| TseFI | GTSAC | 2 cut(s) | 106, 471 |
| Tsp45I | GTSAC | 2 cut(s) | 106, 471 |
| TspDTI | ATGAA | 2 cut(s) | 270, 481 |
| TspGWI | ACGGA | 2 cut(s) | 357, 445 |
| Tth111I | GACNNNGTC | 1 cut(s) | 235 |
| XmnI | GAANNNNTTC | 1 cut(s) | 93 |
| Zsp2I | ATGCAT | 2 cut(s) | 181, 328 |