Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g22960 |
| rosa_chinensis | RchiOBHm_Chr1g0368121 RchiOBHm_Chr1g0368141 RchiOBHm_Chr1g0368161 |
| rosa_laevigata | RLG00000027234 RLG00000027235 |
| rosa_multiflora | Rmu_sc0006814.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00270640 Rroxscaffold_4G00288840 |
| rosa_rugosa | Rorug01G0339000 |
| rosa_samantha | Rh1AG346000 Rh1AG346300 Rh1AG346500 Rh1BG308600 Rh1BG308800 Rh1DG340700 Rh1DG340900 Rh1DG341000 Rh7CG058500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 98 |
| AatII | GACGTC | 1 cut(s) | 173 |
| AciI | CCGC | 1 cut(s) | 343 |
| AcyI | GRCGYC | 2 cut(s) | 67, 170 |
| AgsI | TTSAA | 1 cut(s) | 161 |
| Alw26I | GTCTC | 2 cut(s) | 144, 282 |
| AoxI | GGCC | 1 cut(s) | 79 |
| ApeKI | GCWGC | 1 cut(s) | 361 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 114, 134 |
| AspLEI | GCGC | 1 cut(s) | 342 |
| AsuC2I | CCSGG | 1 cut(s) | 140 |
| AsuHPI | GGTGA | 1 cut(s) | 262 |
| BccI | CCATC | 2 cut(s) | 30, 68 |
| BcnI | CCSGG | 1 cut(s) | 140 |
| BcoDI | GTCTC | 2 cut(s) | 144, 282 |
| BglII | AGATCT | 1 cut(s) | 60 |
| BisI | GCNGC | 2 cut(s) | 343, 362 |
| BlsI | GCNGC | 2 cut(s) | 344, 363 |
| Bme1390I | CCNGG | 1 cut(s) | 140 |
| BmrFI | CCNGG | 1 cut(s) | 140 |
| BpmI | CTGGAG | 1 cut(s) | 130 |
| BpuMI | CCSGG | 1 cut(s) | 140 |
| BsaBI | GATNNNNATC | 1 cut(s) | 40 |
| BsaHI | GRCGYC | 2 cut(s) | 67, 170 |
| Bse1I | ACTGG | 2 cut(s) | 37, 318 |
| Bse8I | GATNNNNATC | 1 cut(s) | 40 |
| BseGI | GGATG | 1 cut(s) | 41 |
| BseJI | GATNNNNATC | 1 cut(s) | 40 |
| BseNI | ACTGG | 2 cut(s) | 37, 318 |
| BsgI | GTGCAG | 1 cut(s) | 267 |
| BshFI | GGCC | 1 cut(s) | 81 |
| BsiSI | CCGG | 1 cut(s) | 139 |
| BslFI | GGGAC | 1 cut(s) | 155 |
| BsmAI | GTCTC | 2 cut(s) | 144, 282 |
| BsmBI | CGTCTC | 1 cut(s) | 144 |
| BsmFI | GGGAC | 1 cut(s) | 155 |
| BsnI | GGCC | 1 cut(s) | 81 |
| Bsp143I | GATC | 3 cut(s) | 41, 60, 291 |
| BspACI | CCGC | 1 cut(s) | 343 |
| BspANI | GGCC | 1 cut(s) | 81 |
| BspHI | TCATGA | 1 cut(s) | 118 |
| BsrI | ACTGG | 2 cut(s) | 37, 318 |
| BssMI | GATC | 3 cut(s) | 41, 60, 291 |
| BssNI | GRCGYC | 2 cut(s) | 67, 170 |
| Bst4CI | ACNGT | 1 cut(s) | 192 |
| BstACI | GRCGYC | 2 cut(s) | 67, 170 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 1 cut(s) | 195 |
| BstF5I | GGATG | 1 cut(s) | 41 |
| BstHHI | GCGC | 1 cut(s) | 342 |
| BstKTI | GATC | 3 cut(s) | 44, 63, 294 |
| BstMAI | GTCTC | 2 cut(s) | 144, 282 |
| BstMBI | GATC | 3 cut(s) | 41, 60, 291 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 14 |
| BstSCI | CCNGG | 1 cut(s) | 138 |
| BstX2I | RGATCY | 1 cut(s) | 60 |
| BstYI | RGATCY | 1 cut(s) | 60 |
| BsuRI | GGCC | 1 cut(s) | 81 |
| BtsCI | GGATG | 1 cut(s) | 41 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| CciI | TCATGA | 1 cut(s) | 118 |
| CfoI | GCGC | 1 cut(s) | 342 |
| CseI | GACGC | 2 cut(s) | 56, 161 |
| CviAII | CATG | 2 cut(s) | 119, 353 |
| CviJI | RGCY | 3 cut(s) | 81, 302, 335 |
| CviKI_1 | RGCY | 3 cut(s) | 81, 302, 335 |
| DdeI | CTNAG | 1 cut(s) | 195 |
| DpnI | GATC | 3 cut(s) | 43, 62, 293 |
| DpnII | GATC | 3 cut(s) | 41, 60, 291 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 98 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 98 |
| Eco32I | GATATC | 1 cut(s) | 328 |
| EcoRV | GATATC | 1 cut(s) | 328 |
| Esp3I | CGTCTC | 1 cut(s) | 144 |
| FaeI | CATG | 2 cut(s) | 122, 356 |
| FaiI | YATR | 5 cut(s) | 95, 120, 188, 248, 354 |
| FaqI | GGGAC | 1 cut(s) | 155 |
| FatI | CATG | 2 cut(s) | 118, 352 |
| Fnu4HI | GCNGC | 2 cut(s) | 343, 362 |
| FokI | GGATG | 1 cut(s) | 48 |
| Fsp4HI | GCNGC | 2 cut(s) | 343, 362 |
| GlaI | GCGC | 1 cut(s) | 341 |
| GluI | GCNGC | 2 cut(s) | 343, 362 |
| GsuI | CTGGAG | 1 cut(s) | 130 |
| HaeIII | GGCC | 1 cut(s) | 81 |
| HapII | CCGG | 1 cut(s) | 139 |
| HgaI | GACGC | 2 cut(s) | 56, 161 |
| HhaI | GCGC | 1 cut(s) | 342 |
| Hin1I | GRCGYC | 2 cut(s) | 67, 170 |
| Hin1II | CATG | 2 cut(s) | 122, 356 |
| Hin6I | GCGC | 1 cut(s) | 340 |
| HinP1I | GCGC | 1 cut(s) | 340 |
| HincII | GTYRAC | 1 cut(s) | 168 |
| HindII | GTYRAC | 1 cut(s) | 168 |
| HinfI | GANTC | 4 cut(s) | 130, 143, 275, 348 |
| HpaII | CCGG | 1 cut(s) | 139 |
| HphI | GGTGA | 1 cut(s) | 262 |
| Hpy166II | GTNNAC | 1 cut(s) | 168 |
| Hpy188I | TCNGA | 2 cut(s) | 49, 223 |
| Hpy188III | TCNNGA | 5 cut(s) | 58, 71, 119, 147, 295 |
| Hpy8I | GTNNAC | 1 cut(s) | 168 |
| HpyAV | CCTTC | 2 cut(s) | 218, 316 |
| HpyCH4III | ACNGT | 1 cut(s) | 192 |
| HpyCH4IV | ACGT | 1 cut(s) | 170 |
| HpyCH4V | TGCA | 4 cut(s) | 8, 87, 177, 284 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 14 |
| HpyF3I | CTNAG | 1 cut(s) | 195 |
| HpySE526I | ACGT | 1 cut(s) | 170 |
| Hsp92I | GRCGYC | 2 cut(s) | 67, 170 |
| Hsp92II | CATG | 2 cut(s) | 122, 356 |
| HspAI | GCGC | 1 cut(s) | 340 |
| Kzo9I | GATC | 3 cut(s) | 41, 60, 291 |
| MaeII | ACGT | 1 cut(s) | 170 |
| MalI | GATC | 3 cut(s) | 43, 62, 293 |
| MboI | GATC | 3 cut(s) | 41, 60, 291 |
| MflI | RGATCY | 1 cut(s) | 60 |
| MluCI | AATT | 2 cut(s) | 113, 217 |
| MlyI | GAGTC | 3 cut(s) | 137, 284, 342 |
| MnlI | CCTC | 4 cut(s) | 120, 300, 312, 325 |
| MroXI | GAANNNNTTC | 2 cut(s) | 114, 134 |
| MspI | CCGG | 1 cut(s) | 139 |
| MspR9I | CCNGG | 1 cut(s) | 140 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 14 |
| NciI | CCSGG | 1 cut(s) | 140 |
| NdeII | GATC | 3 cut(s) | 41, 60, 291 |
| NlaIII | CATG | 2 cut(s) | 122, 356 |
| NmeAIII | GCCGAG | 1 cut(s) | 328 |
| PagI | TCATGA | 1 cut(s) | 118 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 219 |
| PdmI | GAANNNNTTC | 2 cut(s) | 114, 134 |
| PfeI | GAWTC | 1 cut(s) | 130 |
| PfoI | TCCNGGA | 1 cut(s) | 138 |
| PkrI | GCNGC | 2 cut(s) | 344, 363 |
| PleI | GAGTC | 3 cut(s) | 137, 283, 342 |
| PpsI | GAGTC | 3 cut(s) | 137, 283, 342 |
| PsuI | RGATCY | 1 cut(s) | 60 |
| SatI | GCNGC | 2 cut(s) | 343, 362 |
| Sau3AI | GATC | 3 cut(s) | 41, 60, 291 |
| SchI | GAGTC | 3 cut(s) | 137, 284, 342 |
| ScrFI | CCNGG | 1 cut(s) | 140 |
| SetI | ASST | 2 cut(s) | 167, 173 |
| Sse9I | AATT | 2 cut(s) | 113, 217 |
| SsiI | CCGC | 1 cut(s) | 343 |
| SspI | AATATT | 1 cut(s) | 181 |
| StyD4I | CCNGG | 1 cut(s) | 138 |
| TaaI | ACNGT | 1 cut(s) | 192 |
| TaiI | ACGT | 1 cut(s) | 173 |
| TaqI | TCGA | 1 cut(s) | 330 |
| TasI | AATT | 2 cut(s) | 113, 217 |
| TauI | GCSGC | 1 cut(s) | 345 |
| TfiI | GAWTC | 1 cut(s) | 130 |
| TseI | GCWGC | 1 cut(s) | 361 |
| TspDTI | ATGAA | 2 cut(s) | 107, 135 |
| TspGWI | ACGGA | 1 cut(s) | 139 |
| XmnI | GAANNNNTTC | 2 cut(s) | 114, 134 |
| ZraI | GACGTC | 1 cut(s) | 171 |