Rh1AG346300

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0012653
Physical Location & Seq
Forward (+)
58214211 .. 58215217
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG346300.1

Sequence Viewer

Length: 681 bp
ATGGAGAAGAACCAGAATGGCGTCGTTGGGGAGCATGACATGTCGAAACCTCCGGAGGTCAATACGTTTGACCCTTCATGGAGCGACGAAGGGATTCTTCAACTTGAAGTCGTCTCTTTATCTAAGAGATACCCTAAACTTCTAGAACCATATTTGCTACAAAGTTTTCCAAAGACGCAACAAGTGTTTAGCATCATTCGATTTACGTATATGGTGGATCCCTATAATAGTTGCATCACATTGTCAACAACCAGGAAGGAACCAGCTGTTATTCGCAGAGCCAAGGAGTTTCTTCAACTTGTAGTTCACCACATGCCTACACAATTAGCATTTAAACTCTTTACTGGATGGCTATCATCTGACATCATCAAGATCTGGCGTCAAGATGGTGGCCTTTGCAAAGACATTGGGGTCAGCGGGGAACAATTTCATGAACGGAAGAATCTTTTCCGGGACTCCAGAGACGCACTTGAAAGGTTGACGTCCTGCAAAATTATCATACAGTCTATGACTATCGTGGTTATCGGTAAATCCGAAGGAATAAAGATAGTCAGGGATATGGTGAAAGACTGCTTTGTTTCCAATGAGTCTCCTGCACCAAAGATCAGGAGAGCCGAGAGGGAACTGGCGAGGAAGGATATTGAGGCTGTGCGCCGCCGACTTCACGAGAAGCAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

26.17

Weight (kDa)

9.26

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 153 - 207 5.2e-10 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 410
AatII GACGTC 1 cut(s) 485
AccIII TCCGGA 1 cut(s) 52
AciI CCGC 2 cut(s) 417, 655
AclWI GGATC 2 cut(s) 212, 225
AcyI GRCGYC 3 cut(s) 21, 379, 482
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 4 cut(s) 101, 107, 296, 473
AjnI CCWGG 1 cut(s) 251
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Alw26I GTCTC 3 cut(s) 118, 456, 594
AlwI GGATC 2 cut(s) 212, 225
Aor13HI TCCGGA 1 cut(s) 52
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 1 cut(s) 673
Asp700I GAANNNNTTC 3 cut(s) 93, 426, 446
AspLEI GCGC 1 cut(s) 654
AsuC2I CCSGG 1 cut(s) 452
AsuHPI GGTGA 2 cut(s) 299, 574
BamHI GGATCC 1 cut(s) 217
BauI CACGAG 1 cut(s) 665
BccI CCATC 2 cut(s) 342, 380
BciT130I CCWGG 1 cut(s) 253
BcnI CCSGG 1 cut(s) 452
BcoDI GTCTC 3 cut(s) 118, 456, 594
BfaI CTAG 1 cut(s) 143
BglII AGATCT 1 cut(s) 372
BisI GCNGC 2 cut(s) 655, 674
BlsI GCNGC 2 cut(s) 656, 675
Bme1390I CCNGG 2 cut(s) 253, 452
BmiI GGNNCC 2 cut(s) 219, 261
BmrFI CCNGG 2 cut(s) 253, 452
BmsI GCATC 2 cut(s) 201, 243
BpmI CTGGAG 1 cut(s) 442
BpuMI CCSGG 1 cut(s) 452
BsaAI YACGTR 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 352
BsaHI GRCGYC 3 cut(s) 21, 379, 482
BsaJI CCNNGG 1 cut(s) 282
BsaWI WCCGGW 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 349, 630
Bse8I GATNNNNATC 1 cut(s) 352
BseAI TCCGGA 1 cut(s) 52
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 353
BseJI GATNNNNATC 1 cut(s) 352
BseNI ACTGG 2 cut(s) 349, 630
BsgI GTGCAG 1 cut(s) 579
BshFI GGCC 1 cut(s) 393
BsiSI CCGG 2 cut(s) 53, 451
BslFI GGGAC 1 cut(s) 467
BsmAI GTCTC 3 cut(s) 118, 456, 594
BsmBI CGTCTC 2 cut(s) 118, 456
BsmFI GGGAC 1 cut(s) 467
BsnI GGCC 1 cut(s) 393
Bsp13I TCCGGA 1 cut(s) 52
Bsp143I GATC 3 cut(s) 217, 372, 603
BspACI CCGC 2 cut(s) 417, 655
BspANI GGCC 1 cut(s) 393
BspEI TCCGGA 1 cut(s) 52
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 219, 261
BspPI GGATC 2 cut(s) 212, 225
BsrI ACTGG 2 cut(s) 349, 630
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 3 cut(s) 217, 372, 603
BssNI GRCGYC 3 cut(s) 21, 379, 482
BssSI CACGAG 1 cut(s) 665
BssT1I CCWWGG 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 665
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 504
BstACI GRCGYC 3 cut(s) 21, 379, 482
BstBAI YACGTR 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 353
BstHHI GCGC 1 cut(s) 654
BstKTI GATC 3 cut(s) 220, 375, 606
BstMAI GTCTC 3 cut(s) 118, 456, 594
BstMBI GATC 3 cut(s) 217, 372, 603
BstNI CCWGG 1 cut(s) 253
BstNSI RCATGY 2 cut(s) 43, 316
BstSCI CCNGG 2 cut(s) 251, 450
BstSNI TACGTA 1 cut(s) 207
BstX2I RGATCY 2 cut(s) 217, 372
BstYI RGATCY 2 cut(s) 217, 372
BsuRI GGCC 1 cut(s) 393
BtsCI GGATG 1 cut(s) 353
CciI TCATGA 1 cut(s) 430
CfoI GCGC 1 cut(s) 654
CseI GACGC 4 cut(s) 10, 184, 368, 473
CviAII CATG 5 cut(s) 35, 40, 78, 313, 431
CviJI RGCY 6 cut(s) 266, 281, 352, 393, 614, 647
CviKI_1 RGCY 6 cut(s) 266, 281, 352, 393, 614, 647
DdeI CTNAG 1 cut(s) 123
DpnI GATC 3 cut(s) 219, 374, 605
DpnII GATC 3 cut(s) 217, 372, 603
DraI TTTAAA 1 cut(s) 334
DrdI GACNNNNNNGTC 1 cut(s) 410
DseDI GACNNNNNNGTC 1 cut(s) 410
Eco105I TACGTA 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
Esp3I CGTCTC 2 cut(s) 118, 456
FaeI CATG 5 cut(s) 38, 43, 81, 316, 434
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FaqI GGGAC 1 cut(s) 467
FatI CATG 5 cut(s) 34, 39, 77, 312, 430
FauI CCCGC 1 cut(s) 410
Fnu4HI GCNGC 2 cut(s) 655, 674
FokI GGATG 1 cut(s) 360
Fsp4HI GCNGC 2 cut(s) 655, 674
FspBI CTAG 1 cut(s) 143
GlaI GCGC 1 cut(s) 653
GluI GCNGC 2 cut(s) 655, 674
GsuI CTGGAG 1 cut(s) 442
HaeIII GGCC 1 cut(s) 393
HapII CCGG 2 cut(s) 53, 451
HgaI GACGC 4 cut(s) 10, 184, 368, 473
HhaI GCGC 1 cut(s) 654
Hin1I GRCGYC 3 cut(s) 21, 379, 482
Hin1II CATG 5 cut(s) 38, 43, 81, 316, 434
Hin6I GCGC 1 cut(s) 652
HinP1I GCGC 1 cut(s) 652
HincII GTYRAC 2 cut(s) 246, 480
HindII GTYRAC 2 cut(s) 246, 480
HinfI GANTC 4 cut(s) 94, 442, 455, 587
HpaII CCGG 2 cut(s) 53, 451
HphI GGTGA 2 cut(s) 299, 574
Hpy166II GTNNAC 3 cut(s) 246, 307, 480
Hpy188I TCNGA 2 cut(s) 361, 535
Hpy188III TCNNGA 8 cut(s) 53, 143, 370, 383, 431, 459, 607, 665
Hpy8I GTNNAC 3 cut(s) 246, 307, 480
Hpy99I CGWCG 2 cut(s) 26, 89
HpyAV CCTTC 5 cut(s) 83, 84, 250, 530, 628
HpyCH4III ACNGT 1 cut(s) 504
HpyCH4IV ACGT 3 cut(s) 65, 206, 482
HpyCH4V TGCA 4 cut(s) 234, 399, 489, 596
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 3 cut(s) 65, 206, 482
Hsp92I GRCGYC 3 cut(s) 21, 379, 482
Hsp92II CATG 5 cut(s) 38, 43, 81, 316, 434
HspAI GCGC 1 cut(s) 652
Kpn2I TCCGGA 1 cut(s) 52
Kzo9I GATC 3 cut(s) 217, 372, 603
LmnI GCTCC 2 cut(s) 31, 81
LweI GCATC 2 cut(s) 201, 243
MaeI CTAG 1 cut(s) 143
MaeII ACGT 3 cut(s) 65, 206, 482
MalI GATC 3 cut(s) 219, 374, 605
MboI GATC 3 cut(s) 217, 372, 603
MboII GAAGA 4 cut(s) 19, 89, 284, 451
MflI RGATCY 2 cut(s) 217, 372
MluCI AATT 3 cut(s) 323, 425, 492
MlyI GAGTC 2 cut(s) 449, 596
MnlI CCTC 5 cut(s) 49, 60, 612, 624, 637
MroI TCCGGA 1 cut(s) 52
MroXI GAANNNNTTC 3 cut(s) 93, 426, 446
MseI TTAA 1 cut(s) 333
MspA1I CMGCKG 2 cut(s) 266, 417
MspI CCGG 2 cut(s) 53, 451
MspR9I CCNGG 2 cut(s) 253, 452
MvaI CCWGG 1 cut(s) 253
NciI CCSGG 1 cut(s) 452
NdeII GATC 3 cut(s) 217, 372, 603
NlaIII CATG 5 cut(s) 38, 43, 81, 316, 434
NlaIV GGNNCC 2 cut(s) 219, 261
NmeAIII GCCGAG 1 cut(s) 640
NspI RCATGY 2 cut(s) 43, 316
PagI TCATGA 1 cut(s) 430
PciI ACATGT 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 531
PdmI GAANNNNTTC 3 cut(s) 93, 426, 446
PfeI GAWTC 2 cut(s) 94, 442
PfoI TCCNGGA 1 cut(s) 450
PkrI GCNGC 2 cut(s) 656, 675
PleI GAGTC 2 cut(s) 449, 595
PpsI GAGTC 2 cut(s) 449, 595
Ppu21I YACGTR 1 cut(s) 207
PscI ACATGT 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 2 cut(s) 219, 261
PsuI RGATCY 2 cut(s) 217, 372
PvuII CAGCTG 1 cut(s) 266
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 2 cut(s) 655, 674
Sau3AI GATC 3 cut(s) 217, 372, 603
SchI GAGTC 2 cut(s) 449, 596
ScrFI CCNGG 2 cut(s) 253, 452
SetI ASST 7 cut(s) 52, 60, 68, 209, 268, 479, 485
SfaNI GCATC 2 cut(s) 201, 243
SnaBI TACGTA 1 cut(s) 207
Sse9I AATT 3 cut(s) 323, 425, 492
SsiI CCGC 2 cut(s) 417, 655
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 2 cut(s) 251, 450
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 504
TaiI ACGT 3 cut(s) 68, 209, 485
TaqI TCGA 2 cut(s) 44, 199
TasI AATT 3 cut(s) 323, 425, 492
TauI GCSGC 1 cut(s) 657
TfiI GAWTC 2 cut(s) 94, 442
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseI GCWGC 1 cut(s) 673
TspDTI ATGAA 3 cut(s) 66, 419, 447
TspGWI ACGGA 1 cut(s) 451
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 2 cut(s) 43, 316
XmnI GAANNNNTTC 3 cut(s) 93, 426, 446
XspI CTAG 1 cut(s) 143
ZraI GACGTC 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.