Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012653

Physical Location & Seq

Genomic Coordinates Reverse (-)

9495024 .. 9500315

Gene Structure 5292 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAGAAGAACCAGAATGACGTCGTTGGGGAGCATGACATGTCGAAACCTCCGGAGGTCAATACGTTTGACCCTTCATGGAGAGACGAAGGGATTCTTCAACTTGAAGTCGTCTCTTTATCTAAGAGATACCCTAAACACCTAGAACCATATTTGCTACAAAGTTTTCTGGAGGTGCAACAACTGTTTAGCATCATTCGATTTACTTGCATCACATTGTCAACAACCAGGAAGAAACCAGCTGTTATTCGCAGAGCCAAGGAGTTTCTTCAACTTGTAGCGGCACATATGCCCGTGCATTTAGCATTTACACTCTTTACTGGACGGCTATCATCTTATATCATCAAGATATGGCGTCAAGATGGTGGCCTTTGCAAAGACATAGGGGTCAGCGGGGAACAATTTCATGAACGGAGGAATCTTTTCCGGGATTCCATAGACGCACTTGAAAGGTTGACGTCCTGCAAAATTATCATACAGTCTACGACTATCGTGGTTATCGGTAAATCCGAAGGAATAAAGATAGTCAGGGATATGGTGAAAGACTGCTTTGTTAGTTTGTTTCCAATGAGTCTCCTGCACCAAAGATCAGGAGAGCCGAAAGGGAACTGGCGAGGAAGGTTATCGAGGCTGTGCGCCGCCGACTTCATGAGAAGCAGCATTAGAGAAAAGCGTGCAGGAGCTAGTGAAATGATGAGAAAATCTAATTATCCAAAGATCTGGCGTCAAGATGGTGGCCTTTGCAGAGACATAGGGATCAGCGGGGAACAATTTAATGAACGGGAGAATCTTTTCCGGGACTCCAGAGACGCACTTGAAAGGTTGACGTCCTGCAATATTATCATACAGTCTACGACTATCGTGGTTATCGGTAATTCCGAAGGAATAAAGATAGTCAGGGATATGGTGAAAGACTGCTTTGTTTCCAATGAGTCTCCTGCACCAAAGATCAGGAGAGCCGAGAGGGAACTGGCGAGGAAGGATATCGAGGCTGTGCGCCGCCGACTCCATGAGAAGCAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

39.27

Weight (kDa)

9.54

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_2nd	PF21800	134 - 192	7.8e-10	KRR1 small subunit processome component, second KH domain
KH_KRR1_2nd	PF21800	269 - 321	1.2e-09	KRR1 small subunit processome component, second KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22960
rosa_chinensis	RchiOBHm_Chr1g0368121 RchiOBHm_Chr1g0368141 RchiOBHm_Chr1g0368161
rosa_laevigata	RLG00000027234 RLG00000027235
rosa_multiflora	Rmu_sc0006814.1_g000002
rosa_roxburghii	Rroxscaffold_3G00270640 Rroxscaffold_4G00288840
rosa_rugosa	Rorug01G0339000
rosa_samantha	Rh1AG346000 Rh1AG346300 Rh1AG346500 Rh1BG308600 Rh1BG308800 Rh1DG340700 Rh1DG340900 Rh1DG341000 Rh7CG058500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
AatII	GACGTC	3 cut(s)	24, 461, 830
AccI	GTMKAC	2 cut(s)	482, 851
AccIII	TCCGGA	1 cut(s)	52
AciI	CCGC	5 cut(s)	281, 393, 639, 762, 1000
AclWI	GGATC	1 cut(s)	764
AcyI	GRCGYC	5 cut(s)	21, 355, 458, 724, 827
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	5 cut(s)	101, 107, 272, 449, 818
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	2 cut(s)	242, 683
AluI	AGCT	2 cut(s)	242, 683
Alw26I	GTCTC	6 cut(s)	78, 118, 578, 741, 801, 939
AlwI	GGATC	1 cut(s)	764
Aor13HI	TCCGGA	1 cut(s)	52
AoxI	GGCC	2 cut(s)	367, 736
ApeKI	GCWGC	2 cut(s)	657, 1018
Asp700I	GAANNNNTTC	4 cut(s)	93, 402, 422, 791
AspLEI	GCGC	2 cut(s)	638, 999
AsuC2I	CCSGG	2 cut(s)	428, 797
AsuHPI	GGTGA	2 cut(s)	550, 919
BbvI	GCAGC	1 cut(s)	669
BccI	CCATC	2 cut(s)	356, 725
BceAI	ACGGC	1 cut(s)	341
BcgI	CGANNNNNNTGC	2 cut(s)	189, 223
BciT130I	CCWGG	1 cut(s)	229
BcnI	CCSGG	2 cut(s)	428, 797
BcoDI	GTCTC	6 cut(s)	78, 118, 578, 741, 801, 939
BfaI	CTAG	2 cut(s)	143, 684
BglII	AGATCT	1 cut(s)	717
BisI	GCNGC	5 cut(s)	282, 639, 658, 1000, 1019
BlsI	GCNGC	5 cut(s)	283, 640, 659, 1001, 1020
Bme1390I	CCNGG	3 cut(s)	229, 428, 797
BmrFI	CCNGG	3 cut(s)	229, 428, 797
BmsI	GCATC	2 cut(s)	201, 219
BpmI	CTGGAG	2 cut(s)	191, 787
BpuMI	CCSGG	2 cut(s)	428, 797
BsaHI	GRCGYC	5 cut(s)	21, 355, 458, 724, 827
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	52
Bse1I	ACTGG	3 cut(s)	325, 614, 975
BseAI	TCCGGA	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	258
BseNI	ACTGG	3 cut(s)	325, 614, 975
BseXI	GCAGC	1 cut(s)	669
BsgI	GTGCAG	3 cut(s)	563, 696, 924
BshFI	GGCC	2 cut(s)	369, 738
BsiSI	CCGG	3 cut(s)	53, 427, 796
BslFI	GGGAC	1 cut(s)	812
BsmAI	GTCTC	6 cut(s)	78, 118, 578, 741, 801, 939
BsmBI	CGTCTC	3 cut(s)	78, 118, 801
BsmFI	GGGAC	1 cut(s)	812
BsnI	GGCC	2 cut(s)	369, 738
Bsp13I	TCCGGA	1 cut(s)	52
Bsp143I	GATC	4 cut(s)	587, 717, 756, 948
BspACI	CCGC	5 cut(s)	281, 393, 639, 762, 1000
BspANI	GGCC	2 cut(s)	369, 738
BspEI	TCCGGA	1 cut(s)	52
BspHI	TCATGA	2 cut(s)	406, 648
BspPI	GGATC	1 cut(s)	764
BsrI	ACTGG	3 cut(s)	325, 614, 975
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	4 cut(s)	587, 717, 756, 948
BssNI	GRCGYC	5 cut(s)	21, 355, 458, 724, 827
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	3 cut(s)	186, 480, 849
BstACI	GRCGYC	5 cut(s)	21, 355, 458, 724, 827
BstC8I	GCNNGC	1 cut(s)	675
BstDEI	CTNAG	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	638, 999
BstKTI	GATC	4 cut(s)	590, 720, 759, 951
BstMAI	GTCTC	6 cut(s)	78, 118, 578, 741, 801, 939
BstMBI	GATC	4 cut(s)	587, 717, 756, 948
BstNI	CCWGG	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	3 cut(s)	227, 426, 795
BstV1I	GCAGC	1 cut(s)	669
BstX2I	RGATCY	1 cut(s)	717
BstXI	CCANNNNNNTGG	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	717
BsuRI	GGCC	2 cut(s)	369, 738
Cac8I	GCNNGC	1 cut(s)	675
CciI	TCATGA	2 cut(s)	406, 648
CfoI	GCGC	2 cut(s)	638, 999
CseI	GACGC	4 cut(s)	344, 449, 713, 818
CviAII	CATG	6 cut(s)	35, 40, 78, 407, 649, 1010
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	4 cut(s)	589, 719, 758, 950
DpnII	GATC	4 cut(s)	587, 717, 756, 948
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
Eco130I	CCWWGG	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	985
EcoRII	CCWGG	1 cut(s)	227
EcoRV	GATATC	1 cut(s)	985
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
Esp3I	CGTCTC	3 cut(s)	78, 118, 801
FaeI	CATG	6 cut(s)	38, 43, 81, 410, 652, 1013
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	1 cut(s)	812
FatI	CATG	6 cut(s)	34, 39, 77, 406, 648, 1009
FauI	CCCGC	2 cut(s)	386, 755
FauNDI	CATATG	1 cut(s)	288
FblI	GTMKAC	2 cut(s)	482, 851
Fnu4HI	GCNGC	5 cut(s)	282, 639, 658, 1000, 1019
Fsp4HI	GCNGC	5 cut(s)	282, 639, 658, 1000, 1019
FspBI	CTAG	2 cut(s)	143, 684
GlaI	GCGC	2 cut(s)	637, 998
GluI	GCNGC	5 cut(s)	282, 639, 658, 1000, 1019
GsuI	CTGGAG	2 cut(s)	191, 787
HaeIII	GGCC	2 cut(s)	369, 738
HapII	CCGG	3 cut(s)	53, 427, 796
HgaI	GACGC	4 cut(s)	344, 449, 713, 818
HhaI	GCGC	2 cut(s)	638, 999
Hin1I	GRCGYC	5 cut(s)	21, 355, 458, 724, 827
Hin1II	CATG	6 cut(s)	38, 43, 81, 410, 652, 1013
Hin6I	GCGC	2 cut(s)	636, 997
HinP1I	GCGC	2 cut(s)	636, 997
HincII	GTYRAC	3 cut(s)	222, 456, 825
HindII	GTYRAC	3 cut(s)	222, 456, 825
HinfI	GANTC	8 cut(s)	94, 418, 431, 571, 787, 800, 932, 1005
HpaII	CCGG	3 cut(s)	53, 427, 796
HphI	GGTGA	2 cut(s)	550, 919
Hpy166II	GTNNAC	5 cut(s)	222, 456, 483, 825, 852
Hpy188I	TCNGA	2 cut(s)	511, 880
Hpy8I	GTNNAC	5 cut(s)	222, 456, 483, 825, 852
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	6 cut(s)	83, 84, 506, 612, 875, 973
HpyCH4III	ACNGT	3 cut(s)	186, 480, 849
HpyCH4IV	ACGT	4 cut(s)	21, 65, 458, 827
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	4 cut(s)	21, 65, 458, 827
Hsp92I	GRCGYC	5 cut(s)	21, 355, 458, 724, 827
Hsp92II	CATG	6 cut(s)	38, 43, 81, 410, 652, 1013
HspAI	GCGC	2 cut(s)	636, 997
Kpn2I	TCCGGA	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	587, 717, 756, 948
LmnI	GCTCC	2 cut(s)	31, 680
Lsp1109I	GCAGC	1 cut(s)	669
LweI	GCATC	2 cut(s)	201, 219
MaeI	CTAG	2 cut(s)	143, 684
MaeII	ACGT	4 cut(s)	21, 65, 458, 827
MalI	GATC	4 cut(s)	589, 719, 758, 950
MboI	GATC	4 cut(s)	587, 717, 756, 948
MboII	GAAGA	4 cut(s)	19, 89, 244, 260
MflI	RGATCY	1 cut(s)	717
MluCI	AATT	5 cut(s)	401, 468, 706, 770, 874
MlyI	GAGTC	4 cut(s)	580, 794, 941, 999
MnlI	CCTC	9 cut(s)	49, 60, 166, 408, 608, 621, 957, 969, 982
MroI	TCCGGA	1 cut(s)	52
MroXI	GAANNNNTTC	4 cut(s)	93, 402, 422, 791
MseI	TTAA	1 cut(s)	774
MspA1I	CMGCKG	3 cut(s)	242, 393, 762
MspI	CCGG	3 cut(s)	53, 427, 796
MspR9I	CCNGG	3 cut(s)	229, 428, 797
MvaI	CCWGG	1 cut(s)	229
NciI	CCSGG	2 cut(s)	428, 797
NdeI	CATATG	1 cut(s)	288
NdeII	GATC	4 cut(s)	587, 717, 756, 948
NlaIII	CATG	6 cut(s)	38, 43, 81, 410, 652, 1013
NmeAIII	GCCGAG	1 cut(s)	985
NspI	RCATGY	1 cut(s)	43
PagI	TCATGA	2 cut(s)	406, 648
PciI	ACATGT	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	2 cut(s)	507, 876
PdmI	GAANNNNTTC	4 cut(s)	93, 402, 422, 791
PfeI	GAWTC	4 cut(s)	94, 418, 431, 787
PfoI	TCCNGGA	2 cut(s)	426, 795
PkrI	GCNGC	5 cut(s)	283, 640, 659, 1001, 1020
PleI	GAGTC	4 cut(s)	579, 794, 940, 999
PpsI	GAGTC	4 cut(s)	579, 794, 940, 999
PscI	ACATGT	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	717
PvuII	CAGCTG	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	774
SatI	GCNGC	5 cut(s)	282, 639, 658, 1000, 1019
Sau3AI	GATC	4 cut(s)	587, 717, 756, 948
SchI	GAGTC	4 cut(s)	580, 794, 941, 999
ScrFI	CCNGG	3 cut(s)	229, 428, 797
SfaNI	GCATC	2 cut(s)	201, 219
Sse9I	AATT	5 cut(s)	401, 468, 706, 770, 874
SsiI	CCGC	5 cut(s)	281, 393, 639, 762, 1000
SspI	AATATT	1 cut(s)	838
SspMI	CTAG	2 cut(s)	143, 684
StyD4I	CCNGG	3 cut(s)	227, 426, 795
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	3 cut(s)	186, 480, 849
TaiI	ACGT	4 cut(s)	24, 68, 461, 830
TaqI	TCGA	4 cut(s)	44, 199, 626, 987
TasI	AATT	5 cut(s)	401, 468, 706, 770, 874
TauI	GCSGC	3 cut(s)	284, 641, 1002
TfiI	GAWTC	4 cut(s)	94, 418, 431, 787
Tru1I	TTAA	1 cut(s)	774
Tru9I	TTAA	1 cut(s)	774
TseI	GCWGC	2 cut(s)	657, 1018
TspDTI	ATGAA	5 cut(s)	66, 395, 423, 637, 792
TspGWI	ACGGA	1 cut(s)	427
XceI	RCATGY	1 cut(s)	43
XmiI	GTMKAC	2 cut(s)	482, 851
XmnI	GAANNNNTTC	4 cut(s)	93, 402, 422, 791
XspI	CTAG	2 cut(s)	143, 684
ZraI	GACGTC	3 cut(s)	22, 459, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.