Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0012653

Physical Location & Seq

Genomic Coordinates Forward (+)

56593978 .. 56594865

Gene Structure 888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG340900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAGATGAACCAGAATGGCGTCGTTGGGGAGCATGACATGTCGAAACCTCCGGAGGTCAATACGTTTGACCCTTCATGGAGCGACGAAGGGATTCTTCAACTTGAAGTCGTCTCTTTATCTAAGAGATACCCTAAACACCTAGAACCATATTTGCTACAAAGTTTTCCGGAGGTGCAACAAGTGTTTAGCATCATTCGATTTACGTATATGGTGGATCCCTATAATAGTTGCATCACATTGTCAACAACCAGGAAGGAACCAGCTGTTATTCGCAGAGCCAAGGAGTTTCTTCAACTTGTAGTTCACCACATGCCTGCACATTTAGCATTTACACTCTTTACTGGATGGCGATCATCTGACATCATCAAGATCTGGCGTCAAGATGGTGGCCTTTGCAAAGACATAGGGGTCAGCAGGGAACAATTTCATGAACGGAGGAATCTTTTCCGGGACTCCAGAGACGCACTTGAAAGGTTGACGTCCTGCAATATTATCATACAGTCTAAGACTATCGTGGTTATCGGTAATTCCGAAGGAATAAAGATAGTCAGGGATATGGTGAAAGACTGCTTTATTTCCAATGAGTCTCCTGCACCAAAGATCAGGAGAGCCGAGAGGGAACTGGCGAGGAAGGATATCGAGGCTGTGCGCCGCCGACTCCATGAGAAGCAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

26.3

Weight (kDa)

8.9

Isoelectric Point (pI)

62.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_1st	PF17903	44 - 111	2.9e-06	Krr1 KH1 domain
KH_KRR1_2nd	PF21800	139 - 207	4.2e-11	KRR1 small subunit processome component, second KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22960
rosa_chinensis	RchiOBHm_Chr1g0368121 RchiOBHm_Chr1g0368141 RchiOBHm_Chr1g0368161
rosa_laevigata	RLG00000027234 RLG00000027235
rosa_multiflora	Rmu_sc0006814.1_g000002
rosa_roxburghii	Rroxscaffold_3G00270640 Rroxscaffold_4G00288840
rosa_rugosa	Rorug01G0339000
rosa_samantha	Rh1AG346000 Rh1AG346300 Rh1AG346500 Rh1BG308600 Rh1BG308800 Rh1DG340700 Rh1DG340900 Rh1DG341000 Rh7CG058500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	410
AatII	GACGTC	1 cut(s)	485
AccIII	TCCGGA	2 cut(s)	52, 169
AciI	CCGC	1 cut(s)	655
AclWI	GGATC	2 cut(s)	212, 225
AcyI	GRCGYC	3 cut(s)	21, 379, 482
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	4 cut(s)	101, 107, 296, 473
AjnI	CCWGG	1 cut(s)	251
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw26I	GTCTC	3 cut(s)	118, 456, 594
AlwI	GGATC	2 cut(s)	212, 225
Aor13HI	TCCGGA	2 cut(s)	52, 169
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	1 cut(s)	673
Asp700I	GAANNNNTTC	3 cut(s)	93, 426, 446
AspLEI	GCGC	1 cut(s)	654
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	299, 574
BamHI	GGATCC	1 cut(s)	217
BccI	CCATC	2 cut(s)	342, 380
BciT130I	CCWGG	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	3 cut(s)	118, 456, 594
BfaI	CTAG	1 cut(s)	143
BglII	AGATCT	1 cut(s)	372
BisI	GCNGC	2 cut(s)	655, 674
BlsI	GCNGC	2 cut(s)	656, 675
Bme1390I	CCNGG	2 cut(s)	253, 452
BmiI	GGNNCC	2 cut(s)	219, 261
BmrFI	CCNGG	2 cut(s)	253, 452
BmsI	GCATC	2 cut(s)	201, 243
BpmI	CTGGAG	1 cut(s)	442
BpuMI	CCSGG	1 cut(s)	452
BsaAI	YACGTR	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	352
BsaHI	GRCGYC	3 cut(s)	21, 379, 482
BsaJI	CCNNGG	1 cut(s)	282
BsaWI	WCCGGW	2 cut(s)	52, 169
Bse1I	ACTGG	2 cut(s)	349, 630
Bse8I	GATNNNNATC	1 cut(s)	352
BseAI	TCCGGA	2 cut(s)	52, 169
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	353
BseJI	GATNNNNATC	1 cut(s)	352
BseNI	ACTGG	2 cut(s)	349, 630
BsgI	GTGCAG	2 cut(s)	303, 579
BshFI	GGCC	1 cut(s)	393
BsiSI	CCGG	3 cut(s)	53, 170, 451
BslFI	GGGAC	1 cut(s)	467
BsmAI	GTCTC	3 cut(s)	118, 456, 594
BsmBI	CGTCTC	2 cut(s)	118, 456
BsmFI	GGGAC	1 cut(s)	467
BsnI	GGCC	1 cut(s)	393
Bsp13I	TCCGGA	2 cut(s)	52, 169
Bsp143I	GATC	4 cut(s)	217, 353, 372, 603
BspACI	CCGC	1 cut(s)	655
BspANI	GGCC	1 cut(s)	393
BspEI	TCCGGA	2 cut(s)	52, 169
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	2 cut(s)	219, 261
BspPI	GGATC	2 cut(s)	212, 225
BsrI	ACTGG	2 cut(s)	349, 630
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	4 cut(s)	217, 353, 372, 603
BssNI	GRCGYC	3 cut(s)	21, 379, 482
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	504
BstACI	GRCGYC	3 cut(s)	21, 379, 482
BstBAI	YACGTR	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	2 cut(s)	123, 507
BstF5I	GGATG	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	654
BstKTI	GATC	4 cut(s)	220, 356, 375, 606
BstMAI	GTCTC	3 cut(s)	118, 456, 594
BstMBI	GATC	4 cut(s)	217, 353, 372, 603
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	253
BstNSI	RCATGY	2 cut(s)	43, 316
BstSCI	CCNGG	2 cut(s)	251, 450
BstSNI	TACGTA	1 cut(s)	207
BstX2I	RGATCY	2 cut(s)	217, 372
BstYI	RGATCY	2 cut(s)	217, 372
BsuRI	GGCC	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	318
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	1 cut(s)	654
CseI	GACGC	3 cut(s)	10, 368, 473
CviAII	CATG	6 cut(s)	35, 40, 78, 313, 431, 665
CviJI	RGCY	5 cut(s)	266, 281, 393, 614, 647
CviKI_1	RGCY	5 cut(s)	266, 281, 393, 614, 647
DdeI	CTNAG	2 cut(s)	123, 507
DpnI	GATC	4 cut(s)	219, 355, 374, 605
DpnII	GATC	4 cut(s)	217, 353, 372, 603
DrdI	GACNNNNNNGTC	1 cut(s)	410
DseDI	GACNNNNNNGTC	1 cut(s)	410
Eco105I	TACGTA	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	282
Eco32I	GATATC	1 cut(s)	640
EcoRII	CCWGG	1 cut(s)	251
EcoRV	GATATC	1 cut(s)	640
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
Esp3I	CGTCTC	2 cut(s)	118, 456
FaeI	CATG	6 cut(s)	38, 43, 81, 316, 434, 668
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	6 cut(s)	34, 39, 77, 312, 430, 664
Fnu4HI	GCNGC	2 cut(s)	655, 674
FokI	GGATG	1 cut(s)	360
Fsp4HI	GCNGC	2 cut(s)	655, 674
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	653
GluI	GCNGC	2 cut(s)	655, 674
GsuI	CTGGAG	1 cut(s)	442
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	3 cut(s)	53, 170, 451
HgaI	GACGC	3 cut(s)	10, 368, 473
HhaI	GCGC	1 cut(s)	654
Hin1I	GRCGYC	3 cut(s)	21, 379, 482
Hin1II	CATG	6 cut(s)	38, 43, 81, 316, 434, 668
Hin6I	GCGC	1 cut(s)	652
HinP1I	GCGC	1 cut(s)	652
HincII	GTYRAC	2 cut(s)	246, 480
HindII	GTYRAC	2 cut(s)	246, 480
HinfI	GANTC	5 cut(s)	94, 442, 455, 587, 660
HpaII	CCGG	3 cut(s)	53, 170, 451
HphI	GGTGA	2 cut(s)	299, 574
Hpy166II	GTNNAC	3 cut(s)	246, 307, 480
Hpy188I	TCNGA	2 cut(s)	361, 535
Hpy188III	TCNNGA	7 cut(s)	53, 170, 370, 383, 431, 459, 607
Hpy8I	GTNNAC	3 cut(s)	246, 307, 480
Hpy99I	CGWCG	2 cut(s)	26, 89
HpyAV	CCTTC	5 cut(s)	83, 84, 250, 530, 628
HpyCH4III	ACNGT	1 cut(s)	504
HpyCH4IV	ACGT	3 cut(s)	65, 206, 482
HpyCH4V	TGCA	6 cut(s)	178, 234, 320, 399, 489, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	2 cut(s)	123, 507
HpySE526I	ACGT	3 cut(s)	65, 206, 482
Hsp92I	GRCGYC	3 cut(s)	21, 379, 482
Hsp92II	CATG	6 cut(s)	38, 43, 81, 316, 434, 668
HspAI	GCGC	1 cut(s)	652
Kpn2I	TCCGGA	2 cut(s)	52, 169
Kzo9I	GATC	4 cut(s)	217, 353, 372, 603
LmnI	GCTCC	2 cut(s)	31, 81
LweI	GCATC	2 cut(s)	201, 243
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	3 cut(s)	65, 206, 482
MalI	GATC	4 cut(s)	219, 355, 374, 605
MboI	GATC	4 cut(s)	217, 353, 372, 603
MboII	GAAGA	2 cut(s)	89, 284
MflI	RGATCY	2 cut(s)	217, 372
MluCI	AATT	2 cut(s)	425, 529
MlyI	GAGTC	3 cut(s)	449, 596, 654
MnlI	CCTC	7 cut(s)	49, 60, 166, 432, 612, 624, 637
MroI	TCCGGA	2 cut(s)	52, 169
MroXI	GAANNNNTTC	3 cut(s)	93, 426, 446
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	3 cut(s)	53, 170, 451
MspR9I	CCNGG	2 cut(s)	253, 452
MvaI	CCWGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	326
NciI	CCSGG	1 cut(s)	452
NdeII	GATC	4 cut(s)	217, 353, 372, 603
NlaIII	CATG	6 cut(s)	38, 43, 81, 316, 434, 668
NlaIV	GGNNCC	2 cut(s)	219, 261
NmeAIII	GCCGAG	1 cut(s)	640
NspI	RCATGY	2 cut(s)	43, 316
PagI	TCATGA	1 cut(s)	430
PciI	ACATGT	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	531
PdmI	GAANNNNTTC	3 cut(s)	93, 426, 446
PfeI	GAWTC	2 cut(s)	94, 442
PfoI	TCCNGGA	1 cut(s)	450
PkrI	GCNGC	2 cut(s)	656, 675
PleI	GAGTC	3 cut(s)	449, 595, 654
PpsI	GAGTC	3 cut(s)	449, 595, 654
Ppu21I	YACGTR	1 cut(s)	207
PscI	ACATGT	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	2 cut(s)	219, 261
PsuI	RGATCY	2 cut(s)	217, 372
PvuII	CAGCTG	1 cut(s)	266
SatI	GCNGC	2 cut(s)	655, 674
Sau3AI	GATC	4 cut(s)	217, 353, 372, 603
SchI	GAGTC	3 cut(s)	449, 596, 654
ScrFI	CCNGG	2 cut(s)	253, 452
SetI	ASST	9 cut(s)	52, 60, 68, 144, 177, 209, 268, 479, 485
SfaNI	GCATC	2 cut(s)	201, 243
SnaBI	TACGTA	1 cut(s)	207
Sse9I	AATT	2 cut(s)	425, 529
SsiI	CCGC	1 cut(s)	655
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	251, 450
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	504
TaiI	ACGT	3 cut(s)	68, 209, 485
TaqI	TCGA	3 cut(s)	44, 199, 642
TasI	AATT	2 cut(s)	425, 529
TauI	GCSGC	1 cut(s)	657
TfiI	GAWTC	2 cut(s)	94, 442
TseI	GCWGC	1 cut(s)	673
TspDTI	ATGAA	4 cut(s)	23, 66, 419, 447
TspGWI	ACGGA	1 cut(s)	451
XceI	RCATGY	2 cut(s)	43, 316
XmnI	GAANNNNTTC	3 cut(s)	93, 426, 446
XspI	CTAG	1 cut(s)	143
ZraI	GACGTC	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.