Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g22960 |
| rosa_chinensis | RchiOBHm_Chr1g0368121 RchiOBHm_Chr1g0368141 RchiOBHm_Chr1g0368161 |
| rosa_laevigata | RLG00000027234 RLG00000027235 |
| rosa_multiflora | Rmu_sc0006814.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00270640 Rroxscaffold_4G00288840 |
| rosa_rugosa | Rorug01G0339000 |
| rosa_samantha | Rh1AG346000 Rh1AG346300 Rh1AG346500 Rh1BG308600 Rh1BG308800 Rh1DG340700 Rh1DG340900 Rh1DG341000 Rh7CG058500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 410 |
| AatII | GACGTC | 1 cut(s) | 485 |
| AccIII | TCCGGA | 1 cut(s) | 52 |
| AciI | CCGC | 2 cut(s) | 417, 655 |
| AclWI | GGATC | 2 cut(s) | 212, 225 |
| AcyI | GRCGYC | 2 cut(s) | 379, 482 |
| AflIII | ACRYGT | 1 cut(s) | 39 |
| AgsI | TTSAA | 4 cut(s) | 101, 107, 296, 473 |
| AjnI | CCWGG | 1 cut(s) | 251 |
| AluBI | AGCT | 1 cut(s) | 266 |
| AluI | AGCT | 1 cut(s) | 266 |
| Alw26I | GTCTC | 3 cut(s) | 118, 456, 594 |
| AlwI | GGATC | 2 cut(s) | 212, 225 |
| Aor13HI | TCCGGA | 1 cut(s) | 52 |
| AoxI | GGCC | 1 cut(s) | 391 |
| ApeKI | GCWGC | 1 cut(s) | 673 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 93, 426, 446 |
| AspLEI | GCGC | 1 cut(s) | 654 |
| AsuC2I | CCSGG | 1 cut(s) | 452 |
| AsuHPI | GGTGA | 2 cut(s) | 299, 574 |
| BamHI | GGATCC | 1 cut(s) | 217 |
| BauI | CACGAG | 1 cut(s) | 665 |
| BccI | CCATC | 2 cut(s) | 342, 380 |
| BciT130I | CCWGG | 1 cut(s) | 253 |
| BcnI | CCSGG | 1 cut(s) | 452 |
| BcoDI | GTCTC | 3 cut(s) | 118, 456, 594 |
| BfaI | CTAG | 1 cut(s) | 143 |
| BglII | AGATCT | 1 cut(s) | 372 |
| BisI | GCNGC | 2 cut(s) | 655, 674 |
| BlsI | GCNGC | 2 cut(s) | 656, 675 |
| Bme1390I | CCNGG | 2 cut(s) | 253, 452 |
| BmiI | GGNNCC | 2 cut(s) | 219, 261 |
| BmrFI | CCNGG | 2 cut(s) | 253, 452 |
| BmsI | GCATC | 2 cut(s) | 201, 243 |
| BpmI | CTGGAG | 1 cut(s) | 442 |
| BpuMI | CCSGG | 1 cut(s) | 452 |
| BsaAI | YACGTR | 1 cut(s) | 207 |
| BsaBI | GATNNNNATC | 1 cut(s) | 352 |
| BsaHI | GRCGYC | 2 cut(s) | 379, 482 |
| BsaJI | CCNNGG | 1 cut(s) | 282 |
| BsaWI | WCCGGW | 1 cut(s) | 52 |
| Bse1I | ACTGG | 2 cut(s) | 349, 630 |
| Bse8I | GATNNNNATC | 1 cut(s) | 352 |
| BseAI | TCCGGA | 1 cut(s) | 52 |
| BseBI | CCWGG | 1 cut(s) | 253 |
| BseDI | CCNNGG | 1 cut(s) | 282 |
| BseGI | GGATG | 1 cut(s) | 353 |
| BseJI | GATNNNNATC | 1 cut(s) | 352 |
| BseNI | ACTGG | 2 cut(s) | 349, 630 |
| BsgI | GTGCAG | 1 cut(s) | 579 |
| BshFI | GGCC | 1 cut(s) | 393 |
| BsiSI | CCGG | 2 cut(s) | 53, 451 |
| BslFI | GGGAC | 1 cut(s) | 467 |
| BsmAI | GTCTC | 3 cut(s) | 118, 456, 594 |
| BsmBI | CGTCTC | 2 cut(s) | 118, 456 |
| BsmFI | GGGAC | 1 cut(s) | 467 |
| BsnI | GGCC | 1 cut(s) | 393 |
| Bsp13I | TCCGGA | 1 cut(s) | 52 |
| Bsp143I | GATC | 3 cut(s) | 217, 372, 603 |
| BspACI | CCGC | 2 cut(s) | 417, 655 |
| BspANI | GGCC | 1 cut(s) | 393 |
| BspEI | TCCGGA | 1 cut(s) | 52 |
| BspHI | TCATGA | 1 cut(s) | 430 |
| BspLI | GGNNCC | 2 cut(s) | 219, 261 |
| BspPI | GGATC | 2 cut(s) | 212, 225 |
| BsrI | ACTGG | 2 cut(s) | 349, 630 |
| BssECI | CCNNGG | 1 cut(s) | 282 |
| BssMI | GATC | 3 cut(s) | 217, 372, 603 |
| BssNI | GRCGYC | 2 cut(s) | 379, 482 |
| BssSI | CACGAG | 1 cut(s) | 665 |
| BssT1I | CCWWGG | 1 cut(s) | 282 |
| Bst2BI | CACGAG | 1 cut(s) | 665 |
| Bst2UI | CCWGG | 1 cut(s) | 253 |
| Bst4CI | ACNGT | 1 cut(s) | 504 |
| BstACI | GRCGYC | 2 cut(s) | 379, 482 |
| BstBAI | YACGTR | 1 cut(s) | 207 |
| BstDEI | CTNAG | 1 cut(s) | 123 |
| BstF5I | GGATG | 1 cut(s) | 353 |
| BstHHI | GCGC | 1 cut(s) | 654 |
| BstKTI | GATC | 3 cut(s) | 220, 375, 606 |
| BstMAI | GTCTC | 3 cut(s) | 118, 456, 594 |
| BstMBI | GATC | 3 cut(s) | 217, 372, 603 |
| BstNI | CCWGG | 1 cut(s) | 253 |
| BstNSI | RCATGY | 2 cut(s) | 43, 316 |
| BstSCI | CCNGG | 2 cut(s) | 251, 450 |
| BstSNI | TACGTA | 1 cut(s) | 207 |
| BstX2I | RGATCY | 2 cut(s) | 217, 372 |
| BstYI | RGATCY | 2 cut(s) | 217, 372 |
| BsuRI | GGCC | 1 cut(s) | 393 |
| BtsCI | GGATG | 1 cut(s) | 353 |
| CciI | TCATGA | 1 cut(s) | 430 |
| CfoI | GCGC | 1 cut(s) | 654 |
| CseI | GACGC | 3 cut(s) | 184, 368, 473 |
| CviAII | CATG | 5 cut(s) | 35, 40, 78, 313, 431 |
| CviJI | RGCY | 6 cut(s) | 266, 281, 352, 393, 614, 647 |
| CviKI_1 | RGCY | 6 cut(s) | 266, 281, 352, 393, 614, 647 |
| DdeI | CTNAG | 1 cut(s) | 123 |
| DpnI | GATC | 3 cut(s) | 219, 374, 605 |
| DpnII | GATC | 3 cut(s) | 217, 372, 603 |
| DraI | TTTAAA | 1 cut(s) | 334 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 410 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 410 |
| Eco105I | TACGTA | 1 cut(s) | 207 |
| Eco130I | CCWWGG | 1 cut(s) | 282 |
| EcoRII | CCWGG | 1 cut(s) | 251 |
| EcoT14I | CCWWGG | 1 cut(s) | 282 |
| ErhI | CCWWGG | 1 cut(s) | 282 |
| Esp3I | CGTCTC | 2 cut(s) | 118, 456 |
| FaeI | CATG | 5 cut(s) | 38, 43, 81, 316, 434 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 81, 113 |
| FaqI | GGGAC | 1 cut(s) | 467 |
| FatI | CATG | 5 cut(s) | 34, 39, 77, 312, 430 |
| FauI | CCCGC | 1 cut(s) | 410 |
| Fnu4HI | GCNGC | 2 cut(s) | 655, 674 |
| FokI | GGATG | 1 cut(s) | 360 |
| Fsp4HI | GCNGC | 2 cut(s) | 655, 674 |
| FspBI | CTAG | 1 cut(s) | 143 |
| GlaI | GCGC | 1 cut(s) | 653 |
| GluI | GCNGC | 2 cut(s) | 655, 674 |
| GsuI | CTGGAG | 1 cut(s) | 442 |
| HaeIII | GGCC | 1 cut(s) | 393 |
| HapII | CCGG | 2 cut(s) | 53, 451 |
| HgaI | GACGC | 3 cut(s) | 184, 368, 473 |
| HhaI | GCGC | 1 cut(s) | 654 |
| Hin1I | GRCGYC | 2 cut(s) | 379, 482 |
| Hin1II | CATG | 5 cut(s) | 38, 43, 81, 316, 434 |
| Hin6I | GCGC | 1 cut(s) | 652 |
| HinP1I | GCGC | 1 cut(s) | 652 |
| HincII | GTYRAC | 2 cut(s) | 246, 480 |
| HindII | GTYRAC | 2 cut(s) | 246, 480 |
| HinfI | GANTC | 4 cut(s) | 94, 442, 455, 587 |
| HpaII | CCGG | 2 cut(s) | 53, 451 |
| HphI | GGTGA | 2 cut(s) | 299, 574 |
| Hpy166II | GTNNAC | 3 cut(s) | 246, 307, 480 |
| Hpy188I | TCNGA | 2 cut(s) | 361, 535 |
| Hpy188III | TCNNGA | 7 cut(s) | 53, 370, 383, 431, 459, 607, 665 |
| Hpy8I | GTNNAC | 3 cut(s) | 246, 307, 480 |
| Hpy99I | CGWCG | 1 cut(s) | 89 |
| HpyAV | CCTTC | 5 cut(s) | 83, 84, 250, 530, 628 |
| HpyCH4III | ACNGT | 1 cut(s) | 504 |
| HpyCH4IV | ACGT | 3 cut(s) | 65, 206, 482 |
| HpyCH4V | TGCA | 4 cut(s) | 234, 399, 489, 596 |
| HpyF3I | CTNAG | 1 cut(s) | 123 |
| HpySE526I | ACGT | 3 cut(s) | 65, 206, 482 |
| Hsp92I | GRCGYC | 2 cut(s) | 379, 482 |
| Hsp92II | CATG | 5 cut(s) | 38, 43, 81, 316, 434 |
| HspAI | GCGC | 1 cut(s) | 652 |
| Kpn2I | TCCGGA | 1 cut(s) | 52 |
| Kzo9I | GATC | 3 cut(s) | 217, 372, 603 |
| LmnI | GCTCC | 2 cut(s) | 31, 81 |
| LweI | GCATC | 2 cut(s) | 201, 243 |
| MaeI | CTAG | 1 cut(s) | 143 |
| MaeII | ACGT | 3 cut(s) | 65, 206, 482 |
| MalI | GATC | 3 cut(s) | 219, 374, 605 |
| MboI | GATC | 3 cut(s) | 217, 372, 603 |
| MboII | GAAGA | 4 cut(s) | 19, 89, 284, 451 |
| MflI | RGATCY | 2 cut(s) | 217, 372 |
| MluCI | AATT | 3 cut(s) | 323, 425, 492 |
| MlyI | GAGTC | 2 cut(s) | 449, 596 |
| MnlI | CCTC | 4 cut(s) | 49, 60, 624, 637 |
| MroI | TCCGGA | 1 cut(s) | 52 |
| MroXI | GAANNNNTTC | 3 cut(s) | 93, 426, 446 |
| MseI | TTAA | 1 cut(s) | 333 |
| MspA1I | CMGCKG | 2 cut(s) | 266, 417 |
| MspI | CCGG | 2 cut(s) | 53, 451 |
| MspR9I | CCNGG | 2 cut(s) | 253, 452 |
| MvaI | CCWGG | 1 cut(s) | 253 |
| NciI | CCSGG | 1 cut(s) | 452 |
| NdeII | GATC | 3 cut(s) | 217, 372, 603 |
| NlaIII | CATG | 5 cut(s) | 38, 43, 81, 316, 434 |
| NlaIV | GGNNCC | 2 cut(s) | 219, 261 |
| NmeAIII | GCCGAG | 1 cut(s) | 640 |
| NspI | RCATGY | 2 cut(s) | 43, 316 |
| PagI | TCATGA | 1 cut(s) | 430 |
| PciI | ACATGT | 1 cut(s) | 39 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 531 |
| PdmI | GAANNNNTTC | 3 cut(s) | 93, 426, 446 |
| PfeI | GAWTC | 2 cut(s) | 94, 442 |
| PfoI | TCCNGGA | 1 cut(s) | 450 |
| PkrI | GCNGC | 2 cut(s) | 656, 675 |
| PleI | GAGTC | 2 cut(s) | 449, 595 |
| PpsI | GAGTC | 2 cut(s) | 449, 595 |
| Ppu21I | YACGTR | 1 cut(s) | 207 |
| PscI | ACATGT | 1 cut(s) | 39 |
| Psp6I | CCWGG | 1 cut(s) | 251 |
| PspGI | CCWGG | 1 cut(s) | 251 |
| PspN4I | GGNNCC | 2 cut(s) | 219, 261 |
| PsuI | RGATCY | 2 cut(s) | 217, 372 |
| PvuII | CAGCTG | 1 cut(s) | 266 |
| SaqAI | TTAA | 1 cut(s) | 333 |
| SatI | GCNGC | 2 cut(s) | 655, 674 |
| Sau3AI | GATC | 3 cut(s) | 217, 372, 603 |
| SchI | GAGTC | 2 cut(s) | 449, 596 |
| ScrFI | CCNGG | 2 cut(s) | 253, 452 |
| SetI | ASST | 8 cut(s) | 52, 60, 68, 144, 209, 268, 479, 485 |
| SfaNI | GCATC | 2 cut(s) | 201, 243 |
| SnaBI | TACGTA | 1 cut(s) | 207 |
| Sse9I | AATT | 3 cut(s) | 323, 425, 492 |
| SsiI | CCGC | 2 cut(s) | 417, 655 |
| SspMI | CTAG | 1 cut(s) | 143 |
| StyD4I | CCNGG | 2 cut(s) | 251, 450 |
| StyI | CCWWGG | 1 cut(s) | 282 |
| TaaI | ACNGT | 1 cut(s) | 504 |
| TaiI | ACGT | 3 cut(s) | 68, 209, 485 |
| TaqI | TCGA | 2 cut(s) | 44, 199 |
| TasI | AATT | 3 cut(s) | 323, 425, 492 |
| TauI | GCSGC | 1 cut(s) | 657 |
| TfiI | GAWTC | 2 cut(s) | 94, 442 |
| Tru1I | TTAA | 1 cut(s) | 333 |
| Tru9I | TTAA | 1 cut(s) | 333 |
| TseI | GCWGC | 1 cut(s) | 673 |
| TspDTI | ATGAA | 3 cut(s) | 66, 419, 447 |
| TspGWI | ACGGA | 1 cut(s) | 451 |
| XceI | RCATGY | 2 cut(s) | 43, 316 |
| XmnI | GAANNNNTTC | 3 cut(s) | 93, 426, 446 |
| XspI | CTAG | 1 cut(s) | 143 |
| ZraI | GACGTC | 1 cut(s) | 483 |