Rh1BG308600

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0012653
Physical Location & Seq
Forward (+)
44417911 .. 44418279
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG308600.1

Sequence Viewer

Length: 369 bp
ATGCCTACACAATTAGCATTTACACTCTTTACTGGATGGCTATCATCTGACATCATCAAGATCTGGCGTCAAGATGGTGGCCTTTGCAAAGACATTGGGGTCAGCGGGGAACAATTTCATGAACGGAAGAATCTTTTCCGGGACTCCAGAGACGTACTTGAAAGGTTGACGTCCTGCAAAATTATCATACAGTCTATGACTATCGTGGTTATCGGTAAATCCGAAGGAATAAAGATAGTCAGGGATATGGTGAAAGACTGCTTTGTTTCCAATGAGTCTCCTGCACCAAAGATCAGGAGAGCCGAGAGGCAACTGGCGAGGAAGGATATTGAGGCTGTGCGCCGCCGACTTCACGAGAAGCAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.12

Weight (kDa)

9.72

Isoelectric Point (pI)

53.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 50 - 100 6.1e-10 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
AatII GACGTC 1 cut(s) 173
AciI CCGC 2 cut(s) 105, 343
AcyI GRCGYC 2 cut(s) 67, 170
AfaI GTAC 1 cut(s) 156
AgsI TTSAA 1 cut(s) 161
Alw26I GTCTC 2 cut(s) 144, 282
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 361
Asp700I GAANNNNTTC 2 cut(s) 114, 134
AspLEI GCGC 1 cut(s) 342
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 262
BauI CACGAG 1 cut(s) 353
BccI CCATC 2 cut(s) 30, 68
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 2 cut(s) 144, 282
BglII AGATCT 1 cut(s) 60
BisI GCNGC 2 cut(s) 343, 362
BlsI GCNGC 2 cut(s) 344, 363
Bme1390I CCNGG 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 140
BsaBI GATNNNNATC 1 cut(s) 40
BsaHI GRCGYC 2 cut(s) 67, 170
Bse1I ACTGG 2 cut(s) 37, 318
Bse8I GATNNNNATC 1 cut(s) 40
BseGI GGATG 1 cut(s) 41
BseJI GATNNNNATC 1 cut(s) 40
BseNI ACTGG 2 cut(s) 37, 318
BsgI GTGCAG 1 cut(s) 267
BshFI GGCC 1 cut(s) 81
BsiSI CCGG 1 cut(s) 139
BslFI GGGAC 1 cut(s) 155
BsmAI GTCTC 2 cut(s) 144, 282
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 1 cut(s) 81
Bsp143I GATC 2 cut(s) 60, 291
BspACI CCGC 2 cut(s) 105, 343
BspANI GGCC 1 cut(s) 81
BspHI TCATGA 1 cut(s) 118
BsrI ACTGG 2 cut(s) 37, 318
BssMI GATC 2 cut(s) 60, 291
BssNI GRCGYC 2 cut(s) 67, 170
BssSI CACGAG 1 cut(s) 353
Bst2BI CACGAG 1 cut(s) 353
Bst4CI ACNGT 1 cut(s) 192
BstACI GRCGYC 2 cut(s) 67, 170
BstF5I GGATG 1 cut(s) 41
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 2 cut(s) 63, 294
BstMAI GTCTC 2 cut(s) 144, 282
BstMBI GATC 2 cut(s) 60, 291
BstSCI CCNGG 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuRI GGCC 1 cut(s) 81
BtsCI GGATG 1 cut(s) 41
CciI TCATGA 1 cut(s) 118
CfoI GCGC 1 cut(s) 342
CseI GACGC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 155
CviAII CATG 1 cut(s) 119
CviJI RGCY 4 cut(s) 40, 81, 302, 335
CviKI_1 RGCY 4 cut(s) 40, 81, 302, 335
CviQI GTAC 1 cut(s) 155
DpnI GATC 2 cut(s) 62, 293
DpnII GATC 2 cut(s) 60, 291
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 1 cut(s) 122
FaiI YATR 4 cut(s) 120, 188, 197, 248
FaqI GGGAC 1 cut(s) 155
FatI CATG 1 cut(s) 118
FauI CCCGC 1 cut(s) 98
Fnu4HI GCNGC 2 cut(s) 343, 362
FokI GGATG 1 cut(s) 48
Fsp4HI GCNGC 2 cut(s) 343, 362
GlaI GCGC 1 cut(s) 341
GluI GCNGC 2 cut(s) 343, 362
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 139
HgaI GACGC 1 cut(s) 56
HhaI GCGC 1 cut(s) 342
Hin1I GRCGYC 2 cut(s) 67, 170
Hin1II CATG 1 cut(s) 122
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 3 cut(s) 130, 143, 275
HpaII CCGG 1 cut(s) 139
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 2 cut(s) 49, 223
Hpy188III TCNNGA 6 cut(s) 58, 71, 119, 147, 295, 353
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 2 cut(s) 218, 316
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4IV ACGT 2 cut(s) 153, 170
HpyCH4V TGCA 3 cut(s) 87, 177, 284
HpySE526I ACGT 2 cut(s) 153, 170
Hsp92I GRCGYC 2 cut(s) 67, 170
Hsp92II CATG 1 cut(s) 122
HspAI GCGC 1 cut(s) 340
Kzo9I GATC 2 cut(s) 60, 291
LpnPI CCDG 9 cut(s) 18, 49, 152, 160, 187, 226, 280, 294, 299
MaeII ACGT 2 cut(s) 153, 170
MalI GATC 2 cut(s) 62, 293
MboI GATC 2 cut(s) 60, 291
MboII GAAGA 1 cut(s) 139
MflI RGATCY 1 cut(s) 60
MluCI AATT 3 cut(s) 11, 113, 180
MlyI GAGTC 2 cut(s) 137, 284
MnlI CCTC 3 cut(s) 300, 312, 325
MroXI GAANNNNTTC 2 cut(s) 114, 134
MspA1I CMGCKG 1 cut(s) 105
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 1 cut(s) 140
NciI CCSGG 1 cut(s) 140
NdeII GATC 2 cut(s) 60, 291
NlaIII CATG 1 cut(s) 122
NmeAIII GCCGAG 1 cut(s) 328
PagI TCATGA 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PdmI GAANNNNTTC 2 cut(s) 114, 134
PfeI GAWTC 1 cut(s) 130
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 2 cut(s) 344, 363
PleI GAGTC 2 cut(s) 137, 283
PpsI GAGTC 2 cut(s) 137, 283
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
SatI GCNGC 2 cut(s) 343, 362
Sau3AI GATC 2 cut(s) 60, 291
SchI GAGTC 2 cut(s) 137, 284
ScrFI CCNGG 1 cut(s) 140
SetI ASST 3 cut(s) 156, 167, 173
Sse9I AATT 3 cut(s) 11, 113, 180
SsiI CCGC 2 cut(s) 105, 343
StyD4I CCNGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 192
TaiI ACGT 2 cut(s) 156, 173
TasI AATT 3 cut(s) 11, 113, 180
TauI GCSGC 1 cut(s) 345
TfiI GAWTC 1 cut(s) 130
TseI GCWGC 1 cut(s) 361
TspDTI ATGAA 2 cut(s) 107, 135
TspGWI ACGGA 1 cut(s) 139
XmnI GAANNNNTTC 2 cut(s) 114, 134
ZraI GACGTC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.