Rh1DG341000

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012653
Physical Location & Seq
Forward (+)
56598217 .. 56601308
3092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG341000.1

Sequence Viewer

Length: 861 bp
ATGGAGAAGAACCAGAATGGCGTCGTTGGGGAGCATGACATGTCGAAACCTCCGGAGGTCAATACGTTTGACCCTTCACTGAGCGACGAAGGGATTCTTCAACTTGAAGTCGTCTCTTTATCTAAGAGATACCCTAAACACCTAGAACCGTATTTGCTACAAAGTTTTCCGGAGGTGCAACAACAGTTTAGCATCATTCGATTTACGTATATGGTGGATCCCTATAATAGTTGCATCACATTGTCAACAACCAGGAAGGAACCAGCAGTTATTCGCAGAGCCAAGGAGTTTCTTCAACTTGTAGTTCACCACATGCCTGCACAATTAGCATTTACACTCTTTACTGGACGGCTATCATCTTATATCATCAAGATCTGGCGTCAAGATGGTGGCCTTTGCAGAGACATAGGGGTCAGCGGGGAACAATTTAATGAACGGGAGAATCTTTTCCGGGACTCCAGAGACGCACTTGAAAGAAAGCCGGCCACCCCACCTTCGATCCGATCTGGGAGCCTAAGCCCAAGTTCAATTCTGTTTGCAATTAGAATTAGAATTGTATCCTCTAGAGGCTTGCGAAGGCGGTTAAGCAAGTGGATTTGGTCCCCAGTTCAACGGAGCAGCTTGAGTATTGTGCTCCATCTTCACTCAGCCCCGATCGAGACAGCCGATCGACCCACCAAGCAAAGTCATCAAGATCGACATCACCCTCGCCACCAAAACTCGAAACTACCACAAGAACATCGTCACCAAAAGCAACGAAGAAGAGAAGAATCAGCCAGAGAATGGCCATGGCCTCTATTGGCAAGCAATAAAGGAAGTCGGAGAAGCCGCCGCCGTAAAGGAGAGGTTTCTCAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

33.22

Weight (kDa)

10.46

Isoelectric Point (pI)

73.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 44 - 111 6.8e-06 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 410
AccB7I CCANNNNNTGG 1 cut(s) 783
AccIII TCCGGA 2 cut(s) 52, 169
AciI CCGC 4 cut(s) 417, 580, 829, 832
AclWI GGATC 3 cut(s) 212, 225, 493
AcoI YGGCCR 2 cut(s) 483, 785
AcyI GRCGYC 2 cut(s) 21, 379
AfiI CCNNNNNNNGG 1 cut(s) 783
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 6 cut(s) 101, 107, 296, 473, 528, 611
AjnI CCWGG 1 cut(s) 251
AluBI AGCT 1 cut(s) 621
AluI AGCT 1 cut(s) 621
Alw21I GWGCWC 1 cut(s) 636
Alw26I GTCTC 4 cut(s) 118, 396, 456, 653
AlwI GGATC 3 cut(s) 212, 225, 493
Aor13HI TCCGGA 2 cut(s) 52, 169
AoxI GGCC 4 cut(s) 391, 483, 785, 791
ApeKI GCWGC 1 cut(s) 618
Asp700I GAANNNNTTC 2 cut(s) 93, 446
AspS9I GGNCC 1 cut(s) 600
AsuC2I CCSGG 1 cut(s) 452
AsuHPI GGTGA 3 cut(s) 299, 695, 737
AvaII GGWCC 1 cut(s) 600
BalI TGGCCA 1 cut(s) 787
BamHI GGATCC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 636
BbvI GCAGC 1 cut(s) 630
BccI CCATC 2 cut(s) 380, 645
BceAI ACGGC 2 cut(s) 365, 819
BciT130I CCWGG 1 cut(s) 253
BciVI GTATCC 1 cut(s) 568
BcnI CCSGG 1 cut(s) 452
BcoDI GTCTC 4 cut(s) 118, 396, 456, 653
BfaI CTAG 3 cut(s) 143, 564, 859
BfuI GTATCC 1 cut(s) 568
BglII AGATCT 1 cut(s) 372
BisI GCNGC 3 cut(s) 619, 829, 832
BlsI GCNGC 3 cut(s) 620, 830, 833
Bme1390I CCNGG 2 cut(s) 253, 452
Bme18I GGWCC 1 cut(s) 600
BmgT120I GGNCC 1 cut(s) 600
BmiI GGNNCC 4 cut(s) 219, 261, 512, 602
BmrFI CCNGG 2 cut(s) 253, 452
BmrI ACTGGG 1 cut(s) 599
BmsI GCATC 2 cut(s) 201, 243
BmuI ACTGGG 1 cut(s) 599
BpmI CTGGAG 1 cut(s) 442
Bpu10I CCTNAGC 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 643
BpuMI CCSGG 1 cut(s) 452
BsaAI YACGTR 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 699
BsaHI GRCGYC 2 cut(s) 21, 379
BsaJI CCNNGG 2 cut(s) 282, 788
BsaWI WCCGGW 2 cut(s) 52, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 783
Bse118I RCCGGY 1 cut(s) 481
Bse1I ACTGG 2 cut(s) 349, 605
Bse8I GATNNNNATC 1 cut(s) 699
BseAI TCCGGA 2 cut(s) 52, 169
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 282, 788
BseJI GATNNNNATC 1 cut(s) 699
BseLI CCNNNNNNNGG 1 cut(s) 783
BseMII CTCAG 2 cut(s) 71, 660
BseNI ACTGG 2 cut(s) 349, 605
BseXI GCAGC 1 cut(s) 630
BsgI GTGCAG 1 cut(s) 303
Bsh1285I CGRYCG 2 cut(s) 657, 670
BshFI GGCC 4 cut(s) 393, 485, 787, 793
BsiEI CGRYCG 2 cut(s) 657, 670
BsiHKAI GWGCWC 1 cut(s) 636
BsiSI CCGG 4 cut(s) 53, 170, 451, 482
BslFI GGGAC 2 cut(s) 467, 586
BslI CCNNNNNNNGG 1 cut(s) 783
BsmAI GTCTC 4 cut(s) 118, 396, 456, 653
BsmBI CGTCTC 2 cut(s) 118, 456
BsmFI GGGAC 2 cut(s) 467, 586
BsnI GGCC 4 cut(s) 393, 485, 787, 793
Bsp1286I GDGCHC 1 cut(s) 636
Bsp13I TCCGGA 2 cut(s) 52, 169
Bsp143I GATC 7 cut(s) 217, 372, 498, 503, 654, 667, 694
Bsp19I CCATGG 1 cut(s) 788
BspACI CCGC 4 cut(s) 417, 580, 829, 832
BspANI GGCC 4 cut(s) 393, 485, 787, 793
BspCNI CTCAG 2 cut(s) 72, 659
BspEI TCCGGA 2 cut(s) 52, 169
BspLI GGNNCC 4 cut(s) 219, 261, 512, 602
BspPI GGATC 3 cut(s) 212, 225, 493
BsrFI RCCGGY 1 cut(s) 481
BsrI ACTGG 2 cut(s) 349, 605
BssAI RCCGGY 1 cut(s) 481
BssECI CCNNGG 2 cut(s) 282, 788
BssMI GATC 7 cut(s) 217, 372, 498, 503, 654, 667, 694
BssNI GRCGYC 2 cut(s) 21, 379
BssT1I CCWWGG 2 cut(s) 282, 788
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 2 cut(s) 150, 186
Bst6I CTCTTC 1 cut(s) 757
BstACI GRCGYC 2 cut(s) 21, 379
BstBAI YACGTR 1 cut(s) 207
BstC8I GCNNGC 4 cut(s) 318, 483, 572, 805
BstDEI CTNAG 4 cut(s) 80, 123, 515, 646
BstDSI CCRYGG 1 cut(s) 788
BstKTI GATC 7 cut(s) 220, 375, 501, 506, 657, 670, 697
BstMAI GTCTC 4 cut(s) 118, 396, 456, 653
BstMBI GATC 7 cut(s) 217, 372, 498, 503, 654, 667, 694
BstMCI CGRYCG 2 cut(s) 657, 670
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNI CCWGG 1 cut(s) 253
BstNSI RCATGY 2 cut(s) 43, 316
BstSCI CCNGG 2 cut(s) 251, 450
BstSNI TACGTA 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 630
BstX2I RGATCY 2 cut(s) 217, 372
BstYI RGATCY 2 cut(s) 217, 372
BsuI GTATCC 1 cut(s) 568
BsuRI GGCC 4 cut(s) 393, 485, 787, 793
BtgI CCRYGG 1 cut(s) 788
BtsIMutI CAGTG 1 cut(s) 77
Cac8I GCNNGC 4 cut(s) 318, 483, 572, 805
Cfr10I RCCGGY 1 cut(s) 481
Cfr13I GGNCC 1 cut(s) 600
CseI GACGC 3 cut(s) 10, 368, 473
CviAII CATG 4 cut(s) 35, 40, 313, 789
DdeI CTNAG 4 cut(s) 80, 123, 515, 646
DpnI GATC 7 cut(s) 219, 374, 500, 505, 656, 669, 696
DpnII GATC 7 cut(s) 217, 372, 498, 503, 654, 667, 694
DrdI GACNNNNNNGTC 1 cut(s) 410
DseDI GACNNNNNNGTC 1 cut(s) 410
EaeI YGGCCR 2 cut(s) 483, 785
Eam1104I CTCTTC 1 cut(s) 757
EarI CTCTTC 1 cut(s) 757
Eco105I TACGTA 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 282, 788
Eco47I GGWCC 1 cut(s) 600
EcoRII CCWGG 1 cut(s) 251
EcoT14I CCWWGG 2 cut(s) 282, 788
ErhI CCWWGG 2 cut(s) 282, 788
Esp3I CGTCTC 2 cut(s) 118, 456
FaeI CATG 4 cut(s) 38, 43, 316, 792
FaiI YATR 9 cut(s) 36, 41, 210, 212, 225, 314, 363, 407, 790
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FaqI GGGAC 2 cut(s) 467, 586
FatI CATG 4 cut(s) 34, 39, 312, 788
FauI CCCGC 1 cut(s) 410
Fnu4HI GCNGC 3 cut(s) 619, 829, 832
Fsp4HI GCNGC 3 cut(s) 619, 829, 832
FspBI CTAG 3 cut(s) 143, 564, 859
GluI GCNGC 3 cut(s) 619, 829, 832
GsuI CTGGAG 1 cut(s) 442
HaeIII GGCC 4 cut(s) 393, 485, 787, 793
HapII CCGG 4 cut(s) 53, 170, 451, 482
HgaI GACGC 3 cut(s) 10, 368, 473
Hin1I GRCGYC 2 cut(s) 21, 379
Hin1II CATG 4 cut(s) 38, 43, 316, 792
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HinfI GANTC 4 cut(s) 94, 442, 455, 770
HpaII CCGG 4 cut(s) 53, 170, 451, 482
HphI GGTGA 3 cut(s) 299, 695, 737
Hpy166II GTNNAC 2 cut(s) 246, 307
Hpy188I TCNGA 2 cut(s) 503, 822
Hpy188III TCNNGA 8 cut(s) 53, 170, 370, 383, 459, 564, 658, 692
Hpy8I GTNNAC 2 cut(s) 246, 307
Hpy99I CGWCG 2 cut(s) 26, 89
HpyAV CCTTC 5 cut(s) 83, 84, 250, 504, 570
HpyCH4III ACNGT 2 cut(s) 150, 186
HpyCH4IV ACGT 2 cut(s) 65, 206
HpyCH4V TGCA 5 cut(s) 178, 234, 320, 399, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 4 cut(s) 80, 123, 515, 646
HpySE526I ACGT 2 cut(s) 65, 206
Hsp92I GRCGYC 2 cut(s) 21, 379
Hsp92II CATG 4 cut(s) 38, 43, 316, 792
Kpn2I TCCGGA 2 cut(s) 52, 169
KroI GCCGGC 1 cut(s) 481
KroNI GCCGGC 1 cut(s) 483
Kzo9I GATC 7 cut(s) 217, 372, 498, 503, 654, 667, 694
LmnI GCTCC 4 cut(s) 31, 510, 615, 639
Lsp1109I GCAGC 1 cut(s) 630
LweI GCATC 2 cut(s) 201, 243
MaeI CTAG 3 cut(s) 143, 564, 859
MaeII ACGT 2 cut(s) 65, 206
MaeIII GTNAC 1 cut(s) 743
MalI GATC 7 cut(s) 219, 374, 500, 505, 656, 669, 696
MboI GATC 7 cut(s) 217, 372, 498, 503, 654, 667, 694
MboII GAAGA 7 cut(s) 19, 89, 284, 632, 771, 774, 779
MflI RGATCY 2 cut(s) 217, 372
MhlI GDGCHC 1 cut(s) 636
MlsI TGGCCA 1 cut(s) 787
MluCI AATT 6 cut(s) 323, 425, 528, 540, 546, 552
MluNI TGGCCA 1 cut(s) 787
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 800
MnlI CCTC 8 cut(s) 49, 60, 166, 560, 571, 717, 804, 838
Mox20I TGGCCA 1 cut(s) 787
MroI TCCGGA 2 cut(s) 52, 169
MroNI GCCGGC 1 cut(s) 481
MroXI GAANNNNTTC 2 cut(s) 93, 446
MscI TGGCCA 1 cut(s) 787
MseI TTAA 2 cut(s) 429, 584
Msp20I TGGCCA 1 cut(s) 787
MspA1I CMGCKG 1 cut(s) 417
MspI CCGG 4 cut(s) 53, 170, 451, 482
MspR9I CCNGG 2 cut(s) 253, 452
MvaI CCWGG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 326
NaeI GCCGGC 1 cut(s) 483
NciI CCSGG 1 cut(s) 452
NcoI CCATGG 1 cut(s) 788
NdeII GATC 7 cut(s) 217, 372, 498, 503, 654, 667, 694
NgoMIV GCCGGC 1 cut(s) 481
NlaIII CATG 4 cut(s) 38, 43, 316, 792
NlaIV GGNNCC 4 cut(s) 219, 261, 512, 602
NmuCI GTSAC 1 cut(s) 743
NspI RCATGY 2 cut(s) 43, 316
PciI ACATGT 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 663
PdiI GCCGGC 1 cut(s) 483
PdmI GAANNNNTTC 2 cut(s) 93, 446
PfeI GAWTC 3 cut(s) 94, 442, 770
PflMI CCANNNNNTGG 1 cut(s) 783
PfoI TCCNGGA 1 cut(s) 450
PkrI GCNGC 3 cut(s) 620, 830, 833
Ple19I CGATCG 2 cut(s) 657, 670
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
Ppu21I YACGTR 1 cut(s) 207
PscI ACATGT 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 4 cut(s) 219, 261, 512, 602
PspPI GGNCC 1 cut(s) 600
PsuI RGATCY 2 cut(s) 217, 372
PvuI CGATCG 2 cut(s) 657, 670
SaqAI TTAA 2 cut(s) 429, 584
SatI GCNGC 3 cut(s) 619, 829, 832
Sau3AI GATC 7 cut(s) 217, 372, 498, 503, 654, 667, 694
Sau96I GGNCC 1 cut(s) 600
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 2 cut(s) 253, 452
SduI GDGCHC 1 cut(s) 636
SetI ASST 9 cut(s) 52, 60, 68, 144, 177, 209, 496, 623, 849
SfaNI GCATC 2 cut(s) 201, 243
SinI GGWCC 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 622
SmoI CTYRAG 1 cut(s) 622
SnaBI TACGTA 1 cut(s) 207
Sse9I AATT 6 cut(s) 323, 425, 528, 540, 546, 552
SsiI CCGC 4 cut(s) 417, 580, 829, 832
SspMI CTAG 3 cut(s) 143, 564, 859
StyD4I CCNGG 2 cut(s) 251, 450
StyI CCWWGG 2 cut(s) 282, 788
TaaI ACNGT 2 cut(s) 150, 186
TaiI ACGT 2 cut(s) 68, 209
TaqI TCGA 7 cut(s) 44, 199, 497, 657, 670, 697, 722
TasI AATT 6 cut(s) 323, 425, 528, 540, 546, 552
TauI GCSGC 2 cut(s) 831, 834
TfiI GAWTC 3 cut(s) 94, 442, 770
Tru1I TTAA 2 cut(s) 429, 584
Tru9I TTAA 2 cut(s) 429, 584
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 1 cut(s) 743
TseI GCWGC 1 cut(s) 618
Tsp45I GTSAC 1 cut(s) 743
TspDTI ATGAA 1 cut(s) 447
TspGWI ACGGA 1 cut(s) 628
TspRI CASTG 1 cut(s) 84
Van91I CCANNNNNTGG 1 cut(s) 783
VpaK11BI GGWCC 1 cut(s) 600
XbaI TCTAGA 1 cut(s) 563
XceI RCATGY 2 cut(s) 43, 316
XmnI GAANNNNTTC 2 cut(s) 93, 446
XspI CTAG 3 cut(s) 143, 564, 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.