Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0012653

Physical Location & Seq

Genomic Coordinates Reverse (-)

4229648 .. 4230586

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG058500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGAGAAGAACGAGAATGGCGTCGTTGGGCAGCATGACATGTCCAAGCCTTCAAGGTTTGACCCATCATGGAACGAAGAAGGGATTCTTGAAGTCGTCACCTTCTATAAGAGATACCCTAAACACATCGAGCCCTCTTTGCTCAAAGACTTCCAGAAGCTGCGATATGCATTAAGTCTCTATCGAATTACATATACACTAAATATGTTCGATTGTTGCATCACTTTGTCAACAGCCAGGACTAATGAACCGCATATTGTTCGCAAAGCCAAGGAGCTTCTCCAACTTTTAGCAGTAAACATTCCGGCGGATTATGCATTTCGACTCTTCAACGGAAAGGAATCTTACATCATCAAGATCGGGCATCAATACGGTGGCCTTTGCTCAGACTTCAGGATCAACAATGAGCAATTTTTTGAACGGAAGAGACTTCTCTGGGACTCCAAAGAGGCACTTGCACAAGTCACATCCTGCAGTATTTTCATGCAAGATGAGATAGTTGTCATTGTTGGTAGAGCCGAAGGTGTGAAGATGGTTAGGTCTGTGGTGGAAGACTGCATTGTAAGAAATGAGCATCCTGCACCGAAGATCATGTCCATCGGGAGGAACCTGGCAATGAAGGAAGTTGCAGCTATGCATTTGAGTGAGGACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

25.13

Weight (kDa)

7.65

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_1st	PF17903	38 - 111	9e-09	Krr1 KH1 domain
KH_KRR1_2nd	PF21800	134 - 199	1.5e-11	KRR1 small subunit processome component, second KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22960
rosa_chinensis	RchiOBHm_Chr1g0368121 RchiOBHm_Chr1g0368141 RchiOBHm_Chr1g0368161
rosa_laevigata	RLG00000027234 RLG00000027235
rosa_multiflora	Rmu_sc0006814.1_g000002
rosa_roxburghii	Rroxscaffold_3G00270640 Rroxscaffold_4G00288840
rosa_rugosa	Rorug01G0339000
rosa_samantha	Rh1AG346000 Rh1AG346300 Rh1AG346500 Rh1BG308600 Rh1BG308800 Rh1DG340700 Rh1DG340900 Rh1DG341000 Rh7CG058500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	251, 308
AclWI	GGATC	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	376
AcyI	GRCGYC	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	603
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	4 cut(s)	54, 92, 331, 419
AjnI	CCWGG	2 cut(s)	236, 609
AluBI	AGCT	3 cut(s)	160, 277, 632
AluI	AGCT	3 cut(s)	160, 277, 632
Alw26I	GTCTC	2 cut(s)	182, 421
AlwI	GGATC	1 cut(s)	404
AlwNI	CAGNNNCTG	1 cut(s)	160
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	3 cut(s)	31, 160, 629
ArsI	GACNNNNNNTTYG	2 cut(s)	578, 610
Asp700I	GAANNNNTTC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	649
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	558
BbvI	GCAGC	3 cut(s)	43, 147, 641
BccI	CCATC	3 cut(s)	73, 526, 605
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	2 cut(s)	238, 611
BcoDI	GTCTC	2 cut(s)	182, 421
BfmI	CTRYAG	1 cut(s)	472
BisI	GCNGC	3 cut(s)	32, 161, 630
BlsI	GCNGC	3 cut(s)	33, 162, 631
Bme1390I	CCNGG	2 cut(s)	238, 611
Bme18I	GGWCC	1 cut(s)	649
BmgT120I	GGNCC	1 cut(s)	649
BmiI	GGNNCC	2 cut(s)	608, 651
BmrFI	CCNGG	2 cut(s)	238, 611
BmsI	GCATC	3 cut(s)	228, 373, 583
BpiI	GAAGAC	1 cut(s)	558
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	603
Bse3DI	GCAATG	1 cut(s)	621
BseBI	CCWGG	2 cut(s)	238, 611
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	467, 574
BseLI	CCNNNNNNNGG	1 cut(s)	603
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	1 cut(s)	399
BseXI	GCAGC	3 cut(s)	43, 147, 641
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	1 cut(s)	603
BsmAI	GTCTC	2 cut(s)	182, 421
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	357, 396, 588
BspACI	CCGC	2 cut(s)	251, 308
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	1 cut(s)	398
BspLI	GGNNCC	2 cut(s)	608, 651
BspMAI	CTGCAG	1 cut(s)	476
BspPI	GGATC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	621
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	3 cut(s)	357, 396, 588
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	238, 611
Bst4CI	ACNGT	1 cut(s)	374
Bst6I	CTCTTC	2 cut(s)	332, 419
BstACI	GRCGYC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	385
BstF5I	GGATG	2 cut(s)	467, 574
BstKTI	GATC	3 cut(s)	360, 399, 591
BstMAI	GTCTC	2 cut(s)	182, 421
BstMBI	GATC	3 cut(s)	357, 396, 588
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 314
BstNI	CCWGG	2 cut(s)	238, 611
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	236, 609
BstSFI	CTRYAG	1 cut(s)	472
BstV1I	GCAGC	3 cut(s)	43, 147, 641
BstV2I	GAAGAC	1 cut(s)	558
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	2 cut(s)	467, 574
CaiI	CAGNNNCTG	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	649
CseI	GACGC	1 cut(s)	10
CviAII	CATG	6 cut(s)	35, 40, 69, 484, 592, 654
CviJI	RGCY	9 cut(s)	49, 133, 160, 236, 269, 277, 378, 518, 632
CviKI_1	RGCY	9 cut(s)	49, 133, 160, 236, 269, 277, 378, 518, 632
DdeI	CTNAG	1 cut(s)	385
DpnI	GATC	3 cut(s)	359, 398, 590
DpnII	GATC	3 cut(s)	357, 396, 588
Eam1104I	CTCTTC	2 cut(s)	332, 419
EarI	CTCTTC	2 cut(s)	332, 419
EciI	GGCGGA	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	649
Eco57I	CTGAAG	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	649
EcoRII	CCWGG	2 cut(s)	236, 609
EcoT14I	CCWWGG	1 cut(s)	270
EcoT22I	ATGCAT	3 cut(s)	172, 319, 639
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	6 cut(s)	38, 43, 72, 487, 595, 657
FalI	AAGNNNNNCTT	4 cut(s)	72, 104, 438, 470
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	6 cut(s)	34, 39, 68, 483, 591, 653
Fnu4HI	GCNGC	3 cut(s)	32, 161, 630
FokI	GGATG	2 cut(s)	454, 561
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	3 cut(s)	32, 161, 630
GluI	GCNGC	3 cut(s)	32, 161, 630
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	1 cut(s)	305
HgaI	GACGC	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	6 cut(s)	38, 43, 72, 487, 595, 657
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	4 cut(s)	85, 324, 341, 440
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	231, 298
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	5 cut(s)	89, 154, 355, 394, 601
Hpy8I	GTNNAC	2 cut(s)	231, 298
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	5 cut(s)	60, 74, 112, 515, 613
HpyCH4III	ACNGT	1 cut(s)	374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 314
HpyF3I	CTNAG	1 cut(s)	385
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	6 cut(s)	38, 43, 72, 487, 595, 657
Kzo9I	GATC	3 cut(s)	357, 396, 588
LmnI	GCTCC	1 cut(s)	274
Lsp1109I	GCAGC	3 cut(s)	43, 147, 641
LweI	GCATC	3 cut(s)	228, 373, 583
MaeIII	GTNAC	2 cut(s)	97, 463
MalI	GATC	3 cut(s)	359, 398, 590
MboI	GATC	3 cut(s)	357, 396, 588
MboII	GAAGA	7 cut(s)	19, 89, 319, 436, 541, 563, 598
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	2 cut(s)	186, 410
MlyI	GAGTC	2 cut(s)	318, 434
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	4 cut(s)	145, 442, 597, 640
Mph1103I	ATGCAT	3 cut(s)	172, 319, 639
MroXI	GAANNNNTTC	1 cut(s)	84
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	642
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	2 cut(s)	238, 611
MvaI	CCWGG	2 cut(s)	238, 611
MwoI	GCNNNNNNNGC	2 cut(s)	139, 314
NdeII	GATC	3 cut(s)	357, 396, 588
NlaIII	CATG	6 cut(s)	38, 43, 72, 487, 595, 657
NlaIV	GGNNCC	2 cut(s)	608, 651
NmuCI	GTSAC	2 cut(s)	97, 463
NsiI	ATGCAT	3 cut(s)	172, 319, 639
NspI	RCATGY	1 cut(s)	43
PciI	ACATGT	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	85, 341
PkrI	GCNGC	3 cut(s)	33, 162, 631
PleI	GAGTC	2 cut(s)	318, 434
PpsI	GAGTC	2 cut(s)	318, 434
PpuMI	RGGWCCY	1 cut(s)	649
PscI	ACATGT	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	649
Psp6I	CCWGG	2 cut(s)	236, 609
PspGI	CCWGG	2 cut(s)	236, 609
PspN4I	GGNNCC	2 cut(s)	608, 651
PspPI	GGNCC	1 cut(s)	649
PspPPI	RGGWCCY	1 cut(s)	649
PstI	CTGCAG	1 cut(s)	476
PstNI	CAGNNNCTG	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	642
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	3 cut(s)	32, 161, 630
Sau3AI	GATC	3 cut(s)	357, 396, 588
Sau96I	GGNCC	1 cut(s)	649
SchI	GAGTC	2 cut(s)	318, 434
ScrFI	CCNGG	2 cut(s)	238, 611
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	8 cut(s)	59, 104, 162, 279, 526, 542, 612, 634
SfaNI	GCATC	3 cut(s)	228, 373, 583
SfcI	CTRYAG	1 cut(s)	472
SinI	GGWCC	1 cut(s)	649
SmiMI	CAYNNNNRTG	1 cut(s)	642
Sse9I	AATT	2 cut(s)	186, 410
SsiI	CCGC	2 cut(s)	251, 308
StyD4I	CCNGG	2 cut(s)	236, 609
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	374
TaqI	TCGA	4 cut(s)	129, 184, 210, 322
TasI	AATT	2 cut(s)	186, 410
TfiI	GAWTC	2 cut(s)	85, 341
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TseFI	GTSAC	2 cut(s)	97, 463
TseI	GCWGC	3 cut(s)	31, 160, 629
Tsp45I	GTSAC	2 cut(s)	97, 463
TspDTI	ATGAA	3 cut(s)	261, 472, 632
TspGWI	ACGGA	2 cut(s)	348, 436
VpaK11BI	GGWCC	1 cut(s)	649
XceI	RCATGY	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	84
Zsp2I	ATGCAT	3 cut(s)	172, 319, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.