Rroxscaffold_4G00290070

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012669
Physical Location & Seq
Reverse (-)
10626087 .. 10626518
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00290070.1

Sequence Viewer

Length: 432 bp
ATGGCTACTAGCAGCCTCTGTAAGGAATTTCGATATATGTGGAGGTCTATTGACTCGCTAGATTTTGATGCGGCTGAAATCCTACGGGGATTCTTGGCGGAGAAGGACCGGGAAGTGAGAGACCGGAAAACCCTTGATTATGTAAACTGGGTTACTCGTGTAGTGAGACAGCTTAAGGAGGAGGATGGCAATTTGAAACTTTTCAGGGCTTGTTTTTGTGGAATCGATGAGAGGTATAGGAGTGAAATTGATGAATGGGTTCAGTTTGCGATGATAAGGAGGGTTGAAGTTCTGGAATTGGAATTTCTGGCAGATTGTTCTGCTAACTTTTACCTTTTTCCACACAAGTTAACAGGCTTTGACAGCCTCAAAGCTCTAGAATTGGAATTTGTGGATGTGACACAAGATACCCCTCGACGACTAGGTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

143

Amino Acids

16.95

Weight (kDa)

5.04

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 71, 98
AcsI RAATTY 3 cut(s) 26, 302, 386
AfiI CCNNNNNNNGG 1 cut(s) 22
AflII CTTAAG 1 cut(s) 173
AgsI TTSAA 2 cut(s) 196, 287
AluBI AGCT 2 cut(s) 172, 374
AluI AGCT 2 cut(s) 172, 374
Alw26I GTCTC 2 cut(s) 114, 160
AlwNI CAGNNNCTG 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 12
ApoI RAATTY 3 cut(s) 26, 302, 386
Asp700I GAANNNNTTC 2 cut(s) 200, 258
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 110
AvaII GGWCC 1 cut(s) 106
BauI CACGAG 1 cut(s) 156
BbvI GCAGC 1 cut(s) 24
BccI CCATC 1 cut(s) 179
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 2 cut(s) 114, 160
BfaI CTAG 4 cut(s) 9, 59, 377, 422
BfrI CTTAAG 1 cut(s) 173
BisI GCNGC 2 cut(s) 13, 72
BlsI GCNGC 2 cut(s) 14, 73
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 110
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 1 cut(s) 58
BmuI ACTGGG 1 cut(s) 157
BpuMI CCSGG 1 cut(s) 110
Bsa29I ATCGAT 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 152
BseCI ATCGAT 1 cut(s) 225
BseGI GGATG 2 cut(s) 190, 400
BseLI CCNNNNNNNGG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 24
BshVI ATCGAT 1 cut(s) 225
BsiSI CCGG 2 cut(s) 109, 124
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 2 cut(s) 114, 160
Bso31I GGTCTC 1 cut(s) 114
BspACI CCGC 2 cut(s) 71, 98
BspDI ATCGAT 1 cut(s) 225
BspTI CTTAAG 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 114
BsrI ACTGG 1 cut(s) 152
BssSI CACGAG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 156
BstAFI CTTAAG 1 cut(s) 173
BstENI CCTNNNNNAGG 1 cut(s) 20
BstF5I GGATG 2 cut(s) 190, 400
BstMAI GTCTC 2 cut(s) 114, 160
BstMWI GCNNNNNNNGC 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 24
Bsu15I ATCGAT 1 cut(s) 225
BsuTUI ATCGAT 1 cut(s) 225
BtgZI GCGATG 1 cut(s) 284
BtsCI GGATG 2 cut(s) 190, 400
CaiI CAGNNNCTG 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 106
ClaI ATCGAT 1 cut(s) 225
CviJI RGCY 8 cut(s) 5, 15, 74, 172, 209, 357, 366, 374
CviKI_1 RGCY 8 cut(s) 5, 15, 74, 172, 209, 357, 366, 374
EciI GGCGGA 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 106
EcoNI CCTNNNNNAGG 1 cut(s) 20
FaiI YATR 4 cut(s) 36, 38, 141, 237
Fnu4HI GCNGC 2 cut(s) 13, 72
FokI GGATG 2 cut(s) 197, 407
Fsp4HI GCNGC 2 cut(s) 13, 72
FspBI CTAG 4 cut(s) 9, 59, 377, 422
GluI GCNGC 2 cut(s) 13, 72
HapII CCGG 2 cut(s) 109, 124
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HinfI GANTC 3 cut(s) 53, 90, 222
HpaI GTTAAC 1 cut(s) 351
HpaII CCGG 2 cut(s) 109, 124
Hpy166II GTNNAC 2 cut(s) 145, 351
Hpy188III TCNNGA 2 cut(s) 293, 377
Hpy8I GTNNAC 2 cut(s) 145, 351
Hpy99I CGWCG 1 cut(s) 420
HpyAV CCTTC 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 363
KspAI GTTAAC 1 cut(s) 351
LpnPI CCDG 7 cut(s) 122, 133, 137, 190, 278, 293, 339
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 58
MaeI CTAG 4 cut(s) 9, 59, 377, 422
MaeIII GTNAC 2 cut(s) 151, 397
MluCI AATT 7 cut(s) 26, 190, 246, 296, 302, 380, 386
MlyI GAGTC 1 cut(s) 47
MnlI CCTC 8 cut(s) 26, 36, 172, 175, 225, 273, 377, 423
MroXI GAANNNNTTC 2 cut(s) 200, 258
MseI TTAA 2 cut(s) 174, 350
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 2 cut(s) 109, 124
MspR9I CCNGG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 363
NciI CCSGG 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 397
PdmI GAANNNNTTC 2 cut(s) 200, 258
PfeI GAWTC 2 cut(s) 90, 222
PkrI GCNGC 2 cut(s) 14, 73
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PspPI GGNCC 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 18
SaqAI TTAA 2 cut(s) 174, 350
SatI GCNGC 2 cut(s) 13, 72
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 110
SetI ASST 6 cut(s) 47, 174, 236, 336, 376, 427
SfaNI GCATC 1 cut(s) 58
SinI GGWCC 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 7 cut(s) 26, 190, 246, 296, 302, 380, 386
SsiI CCGC 2 cut(s) 71, 98
SspMI CTAG 4 cut(s) 9, 59, 377, 422
StyD4I CCNGG 1 cut(s) 108
TaqI TCGA 3 cut(s) 31, 225, 415
TasI AATT 7 cut(s) 26, 190, 246, 296, 302, 380, 386
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 90, 222
Tru1I TTAA 2 cut(s) 174, 350
Tru9I TTAA 2 cut(s) 174, 350
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 1 cut(s) 12
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 1 cut(s) 267
Vha464I CTTAAG 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 106
XagI CCTNNNNNAGG 1 cut(s) 20
XapI RAATTY 3 cut(s) 26, 302, 386
XbaI TCTAGA 1 cut(s) 376
XmnI GAANNNNTTC 2 cut(s) 200, 258
XspI CTAG 4 cut(s) 9, 59, 377, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.