Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012669

Physical Location & Seq

Genomic Coordinates Forward (+)

58807349 .. 58811901

Gene Structure 4553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG313600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTGGAGGTCTATTGACTCGCTAGATTTTGATGCGGCTGAAATCCTACGGGGATTCTTGGCGGAGAAGGACCGGGAAGTGAGAGACCGGAAAACCCTTGATTATGTAAACTGGGTTACTCGTGTCGTGAGACAGCTTAAGGAGGAGGATGGCAATTTGAAACTTTTCAGGGCTTGTTTTTGTCGAATCGATGAGAGGTATAGGAGTGAAGTTGATGAATGGGTTCAGTTTGCGATGACAAGGAGGGTTGAAGTTCTGGTATTGGAATTTCTGGCAGGTTGTTCTGCTAACTTTTACCTCTTTCCACACAAGTTAACAGGCTTTGACAGCCTCAAGGCTCTAGAATTGGAATTTGTGGATGTGACACAAGATACCCTCGACGACTTGGTGCGTAACTCCCCTAGTCTTGAGAGGTTAAGGGTGTCGTTTACCCATTCTTTGATCAAGGTAGCGATAATTGGCAATCGGAACCGCCCCGTTGCACTCAAGTCTCTGGTGATGAGTCGTAATCGGCACCTAAAAGCAATTGAGATTTGTAATGCCCCTCTCCTGGCTTTACTGTCATATGTTGGGCATCCTATAGATGTGGTTGTTGAGAATGTGCCACTATTGAGTGAGGCCAACCTTTCCTACCGTTCATCCAACAAAGATTGCATCGCACTCCCTTTCAGCCAACTTTCATCTTGTATTTCTCAGCTACACACTCTCATGATGGACATCCATTGCATGGACGTGAAGCTCATGTGCCTAATGGACCTCGAGGACGATTACATCAACTCATATGATTCATCATCTCGGATAAACCGTACTGTTTTGCCAGAGTTTATCGTTCAAGGAGTTTTCTGCGTCATTCTTTTTATAACGAGACATTGGTTTATGCTTCCATTGGCTCTCCCGCACCTATATTATAACGTCAATTCGTACATGAAGGGGCAGCACTTGGCAGATGTGACTGAGATCTACAACCTGCTGAGCTGGGAGAAAAAACAACGCATCTTCAAGATTGCCTATCTGTTCATCCTGGCCATCCTCTCTCTATTCGGGTTGTTTTGGAGCATTGGAGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cornichon

Protein Analysis

356

Amino Acids

41.35

Weight (kDa)

6.03

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	90 - 188	1e-06	FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1	PF23622	105 - 240	6.6e-09	At1g61320/AtMIF1, LRR domain
Cornichon	PF03311	242 - 347	2.3e-34	Cornichon protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012669)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G053200_v2.0.a1
rosa_laevigata	RLG00000027348
rosa_roxburghii	Rroxscaffold_4G00290060 Rroxscaffold_4G00290070 Rroxscaffold_4G00290210 Rroxscaffold_4G00290400 Rroxscaffold_4G00290410
rosa_rugosa	Rorug01G0328100 Rorug01G0329300
rosa_samantha	Rh1AG337600 Rh1AG337700 Rh1BG297900 Rh1BG299000 Rh1BG299100 Rh1CG313600 Rh1CG314300 Rh1DG329400 Rh1DG330700 Rh1DG330800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	860, 909
AbsI	CCTCGAGG	1 cut(s)	758
Acc36I	ACCTGC	2 cut(s)	266, 975
AccB1I	GGYRCC	1 cut(s)	513
AccB7I	CCANNNNNTGG	1 cut(s)	727
AciI	CCGC	4 cut(s)	35, 62, 472, 896
AcoI	YGGCCR	1 cut(s)	1023
AcsI	RAATTY	2 cut(s)	266, 350
AfaI	GTAC	2 cut(s)	808, 923
AfiI	CCNNNNNNNGG	2 cut(s)	550, 727
AflII	CTTAAG	1 cut(s)	137
AgsI	TTSAA	4 cut(s)	160, 251, 833, 1000
AjiI	CACGTC	1 cut(s)	733
AjnI	CCWGG	2 cut(s)	549, 1020
AluBI	AGCT	4 cut(s)	136, 697, 739, 975
AluI	AGCT	4 cut(s)	136, 697, 739, 975
Alw26I	GTCTC	4 cut(s)	78, 124, 495, 859
Ama87I	CYCGRG	1 cut(s)	758
AoxI	GGCC	2 cut(s)	618, 1023
ApeKI	GCWGC	1 cut(s)	934
ApoI	RAATTY	2 cut(s)	266, 350
Asp700I	GAANNNNTTC	2 cut(s)	164, 222
AspS9I	GGNCC	2 cut(s)	70, 754
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	508
AvaI	CYCGRG	1 cut(s)	758
AvaII	GGWCC	2 cut(s)	70, 754
BalI	TGGCCA	1 cut(s)	1025
BanI	GGYRCC	1 cut(s)	513
BauI	CACGAG	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	946
BccI	CCATC	3 cut(s)	143, 706, 1034
BciT130I	CCWGG	2 cut(s)	551, 1022
BclI	TGATCA	1 cut(s)	441
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	4 cut(s)	78, 124, 495, 859
BfaI	CTAG	3 cut(s)	23, 341, 402
BfmI	CTRYAG	1 cut(s)	579
BfrI	CTTAAG	1 cut(s)	137
BfuAI	ACCTGC	2 cut(s)	266, 975
BglII	AGATCT	1 cut(s)	957
BisI	GCNGC	2 cut(s)	36, 935
BlpI	GCTNAGC	1 cut(s)	971
BlsI	GCNGC	2 cut(s)	37, 936
Bme1390I	CCNGG	3 cut(s)	74, 551, 1022
Bme18I	GGWCC	2 cut(s)	70, 754
BmeT110I	CYCGRG	1 cut(s)	758
BmgBI	CACGTC	1 cut(s)	733
BmgT120I	GGNCC	2 cut(s)	70, 754
BmiI	GGNNCC	2 cut(s)	470, 515
BmrFI	CCNGG	3 cut(s)	74, 551, 1022
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	4 cut(s)	22, 583, 663, 1002
BmuI	ACTGGG	1 cut(s)	121
Bpu1102I	GCTNAGC	1 cut(s)	971
BpuEI	CTTGAG	3 cut(s)	317, 428, 470
BpuMI	CCSGG	1 cut(s)	74
Bsa29I	ATCGAT	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	716
BsaI	GGTCTC	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 727
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	721
Bse8I	GATNNNNATC	1 cut(s)	716
BseBI	CCWGG	2 cut(s)	551, 1022
BseCI	ATCGAT	1 cut(s)	189
BseGI	GGATG	7 cut(s)	154, 364, 574, 638, 717, 1017, 1026
BseJI	GATNNNNATC	1 cut(s)	716
BseLI	CCNNNNNNNGG	2 cut(s)	550, 727
BseMI	GCAATG	1 cut(s)	721
BseMII	CTCAG	3 cut(s)	707, 945, 962
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	946
BseYI	CCCAGC	1 cut(s)	975
BshFI	GGCC	2 cut(s)	620, 1025
BshNI	GGYRCC	1 cut(s)	513
BshVI	ATCGAT	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	758
BsiSI	CCGG	2 cut(s)	73, 88
BslI	CCNNNNNNNGG	2 cut(s)	550, 727
BsmAI	GTCTC	4 cut(s)	78, 124, 495, 859
BsnI	GGCC	2 cut(s)	620, 1025
Bso31I	GGTCTC	1 cut(s)	78
BsoBI	CYCGRG	1 cut(s)	758
Bsp143I	GATC	2 cut(s)	441, 957
Bsp1720I	GCTNAGC	1 cut(s)	971
BspACI	CCGC	4 cut(s)	35, 62, 472, 896
BspANI	GGCC	2 cut(s)	620, 1025
BspCNI	CTCAG	3 cut(s)	706, 946, 963
BspDI	ATCGAT	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	708
BspLI	GGNNCC	2 cut(s)	470, 515
BspMI	ACCTGC	2 cut(s)	266, 975
BspT107I	GGYRCC	1 cut(s)	513
BspTI	CTTAAG	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	721
BsrI	ACTGG	1 cut(s)	116
BssMI	GATC	2 cut(s)	441, 957
BssSI	CACGAG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	120
Bst2UI	CCWGG	2 cut(s)	551, 1022
Bst4CI	ACNGT	4 cut(s)	561, 635, 806, 811
BstAFI	CTTAAG	1 cut(s)	137
BstDEI	CTNAG	3 cut(s)	693, 954, 971
BstF5I	GGATG	7 cut(s)	154, 364, 574, 638, 717, 1017, 1026
BstKTI	GATC	2 cut(s)	444, 960
BstMAI	GTCTC	4 cut(s)	78, 124, 495, 859
BstMBI	GATC	2 cut(s)	441, 957
BstMWI	GCNNNNNNNGC	1 cut(s)	327
BstNI	CCWGG	2 cut(s)	551, 1022
BstSCI	CCNGG	3 cut(s)	72, 549, 1020
BstSFI	CTRYAG	1 cut(s)	579
BstV1I	GCAGC	1 cut(s)	946
BstX2I	RGATCY	1 cut(s)	957
BstYI	RGATCY	1 cut(s)	957
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	620, 1025
BsuTUI	ATCGAT	1 cut(s)	189
BtgZI	GCGATG	2 cut(s)	248, 640
BtrI	CACGTC	1 cut(s)	733
BtsCI	GGATG	7 cut(s)	154, 364, 574, 638, 717, 1017, 1026
BveI	ACCTGC	2 cut(s)	266, 975
CciI	TCATGA	1 cut(s)	708
Cfr13I	GGNCC	2 cut(s)	70, 754
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	835
Csp6I	GTAC	2 cut(s)	807, 922
CviAII	CATG	4 cut(s)	709, 727, 742, 925
CviQI	GTAC	2 cut(s)	807, 922
DdeI	CTNAG	3 cut(s)	693, 954, 971
DpnI	GATC	2 cut(s)	443, 959
DpnII	GATC	2 cut(s)	441, 957
EaeI	YGGCCR	1 cut(s)	1023
EciI	GGCGGA	1 cut(s)	77
Eco31I	GGTCTC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	70, 754
Eco88I	CYCGRG	1 cut(s)	758
EcoRII	CCWGG	2 cut(s)	549, 1020
FaeI	CATG	4 cut(s)	712, 730, 745, 928
FatI	CATG	4 cut(s)	708, 726, 741, 924
FauI	CCCGC	1 cut(s)	903
FauNDI	CATATG	2 cut(s)	565, 781
FbaI	TGATCA	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	36, 935
FokI	GGATG	7 cut(s)	161, 371, 561, 625, 704, 1004, 1013
Fsp4HI	GCNGC	2 cut(s)	36, 935
FspBI	CTAG	3 cut(s)	23, 341, 402
GluI	GCNGC	2 cut(s)	36, 935
GsaI	CCCAGC	1 cut(s)	979
HaeIII	GGCC	2 cut(s)	620, 1025
HapII	CCGG	2 cut(s)	73, 88
HgaI	GACGC	1 cut(s)	835
Hin1II	CATG	4 cut(s)	712, 730, 745, 928
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	5 cut(s)	17, 54, 186, 502, 785
HpaI	GTTAAC	1 cut(s)	315
HpaII	CCGG	2 cut(s)	73, 88
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	3 cut(s)	109, 315, 429
Hpy188I	TCNGA	2 cut(s)	468, 798
Hpy188III	TCNNGA	5 cut(s)	127, 341, 407, 709, 1000
Hpy8I	GTNNAC	3 cut(s)	109, 315, 429
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	2 cut(s)	61, 922
HpyCH4III	ACNGT	4 cut(s)	561, 635, 806, 811
HpyCH4IV	ACGT	2 cut(s)	732, 912
HpyCH4V	TGCA	3 cut(s)	482, 654, 726
HpyF10VI	GCNNNNNNNGC	1 cut(s)	327
HpyF3I	CTNAG	3 cut(s)	693, 954, 971
HpySE526I	ACGT	2 cut(s)	732, 912
Hsp92II	CATG	4 cut(s)	712, 730, 745, 928
Ksp22I	TGATCA	1 cut(s)	441
KspAI	GTTAAC	1 cut(s)	315
Kzo9I	GATC	2 cut(s)	441, 957
LmnI	GCTCC	1 cut(s)	1053
Lsp1109I	GCAGC	1 cut(s)	946
LweI	GCATC	4 cut(s)	22, 583, 663, 1002
MaeI	CTAG	3 cut(s)	23, 341, 402
MaeII	ACGT	2 cut(s)	732, 912
MaeIII	GTNAC	4 cut(s)	115, 361, 392, 949
MalI	GATC	2 cut(s)	443, 959
MboI	GATC	2 cut(s)	441, 957
MboII	GAAGA	1 cut(s)	988
MfeI	CAATTG	1 cut(s)	525
MflI	RGATCY	1 cut(s)	957
MlsI	TGGCCA	1 cut(s)	1025
MluCI	AATT	7 cut(s)	154, 266, 344, 350, 456, 525, 916
MluNI	TGGCCA	1 cut(s)	1025
MlyI	GAGTC	2 cut(s)	11, 511
MmeI	TCCRAC	1 cut(s)	666
Mox20I	TGGCCA	1 cut(s)	1025
MroXI	GAANNNNTTC	2 cut(s)	164, 222
MscI	TGGCCA	1 cut(s)	1025
MseI	TTAA	3 cut(s)	138, 314, 416
MslI	CAYNNNNRTG	2 cut(s)	707, 731
Msp20I	TGGCCA	1 cut(s)	1025
MspCI	CTTAAG	1 cut(s)	137
MspI	CCGG	2 cut(s)	73, 88
MspR9I	CCNGG	3 cut(s)	74, 551, 1022
MunI	CAATTG	1 cut(s)	525
MvaI	CCWGG	2 cut(s)	551, 1022
MwoI	GCNNNNNNNGC	1 cut(s)	327
NciI	CCSGG	1 cut(s)	74
NdeI	CATATG	2 cut(s)	565, 781
NdeII	GATC	2 cut(s)	441, 957
NlaIII	CATG	4 cut(s)	712, 730, 745, 928
NlaIV	GGNNCC	2 cut(s)	470, 515
NmuCI	GTSAC	2 cut(s)	361, 949
PaeR7I	CTCGAG	1 cut(s)	758
PagI	TCATGA	1 cut(s)	708
PcsI	WCGNNNNNNNCGW	1 cut(s)	802
PdmI	GAANNNNTTC	2 cut(s)	164, 222
PfeI	GAWTC	3 cut(s)	54, 186, 785
PflMI	CCANNNNNTGG	1 cut(s)	727
PkrI	GCNGC	2 cut(s)	37, 936
PleI	GAGTC	2 cut(s)	11, 510
PpsI	GAGTC	2 cut(s)	11, 510
PsiI	TTATAA	2 cut(s)	860, 909
Psp6I	CCWGG	2 cut(s)	549, 1020
PspFI	CCCAGC	1 cut(s)	975
PspGI	CCWGG	2 cut(s)	549, 1020
PspN4I	GGNNCC	2 cut(s)	470, 515
PspPI	GGNCC	2 cut(s)	70, 754
PspXI	VCTCGAGB	1 cut(s)	758
PsuI	RGATCY	1 cut(s)	957
RsaI	GTAC	2 cut(s)	808, 923
RsaNI	GTAC	2 cut(s)	807, 922
RseI	CAYNNNNRTG	2 cut(s)	707, 731
SaqAI	TTAA	3 cut(s)	138, 314, 416
SatI	GCNGC	2 cut(s)	36, 935
Sau3AI	GATC	2 cut(s)	441, 957
Sau96I	GGNCC	2 cut(s)	70, 754
SchI	GAGTC	2 cut(s)	11, 511
ScrFI	CCNGG	3 cut(s)	74, 551, 1022
SfaNI	GCATC	4 cut(s)	22, 583, 663, 1002
SfcI	CTRYAG	1 cut(s)	579
Sfr274I	CTCGAG	1 cut(s)	758
SinI	GGWCC	2 cut(s)	70, 754
SlaI	CTCGAG	1 cut(s)	758
SmiMI	CAYNNNNRTG	2 cut(s)	707, 731
SmlI	CTYRAG	5 cut(s)	137, 332, 407, 485, 758
SmoI	CTYRAG	5 cut(s)	137, 332, 407, 485, 758
Sse9I	AATT	7 cut(s)	154, 266, 344, 350, 456, 525, 916
SsiI	CCGC	4 cut(s)	35, 62, 472, 896
SspMI	CTAG	3 cut(s)	23, 341, 402
StyD4I	CCNGG	3 cut(s)	72, 549, 1020
TaaI	ACNGT	4 cut(s)	561, 635, 806, 811
TaiI	ACGT	2 cut(s)	735, 915
TaqI	TCGA	4 cut(s)	184, 189, 378, 759
TasI	AATT	7 cut(s)	154, 266, 344, 350, 456, 525, 916
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	3 cut(s)	54, 186, 785
Tru1I	TTAA	3 cut(s)	138, 314, 416
Tru9I	TTAA	3 cut(s)	138, 314, 416
TseFI	GTSAC	2 cut(s)	361, 949
TseI	GCWGC	1 cut(s)	934
Tsp45I	GTSAC	2 cut(s)	361, 949
TspDTI	ATGAA	6 cut(s)	231, 627, 669, 777, 941, 1006
Van91I	CCANNNNNTGG	1 cut(s)	727
Vha464I	CTTAAG	1 cut(s)	137
VpaK11BI	GGWCC	2 cut(s)	70, 754
XapI	RAATTY	2 cut(s)	266, 350
XbaI	TCTAGA	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	758
XmnI	GAANNNNTTC	2 cut(s)	164, 222
XspI	CTAG	3 cut(s)	23, 341, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.