Rh1AG337600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0012669
Physical Location & Seq
Forward (+)
57148067 .. 57148534
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG337600.1

Sequence Viewer

Length: 468 bp
ATGGATGGTGATCCATCCGAAGTGGGTGTGTCGTTTTTGGATCCGAATCAACTAGGGGAGGAGGCTTGGAGAGTCGCGGCCAGGTTCGCAGCGGGACAACAGGACCACCCTTTGGCCTGCAGCGATGGTTGGATATACTGCGTCAGTCACATCAGTGCTTGTTTTCACTCCCAAACCTTCCAATGGGAGCCGTCTCGTAACCTTGCGAATGAGTTCAATATAAGTCTTCTGGGAGCTTCAAGAACTGTGCAGTATGTCAATCTGCAGGGGATCGAGGGCAGAGTTAACGCGATGTGTCATTGTCGTGAGGGAATGCAACATTTGGAGATATGTGGAACATTGGCTCACGAATATAAAGGTTATTGGTATCCCGGAGTAGTGGTGGGCAGGCACCTCATATGTGTGAATAATGTCCACCCTATCACTGGAGCTTATAGCTATATGATGCTTTATGTGTATGACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.39

Weight (kDa)

5.49

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 390
AccB7I CCANNNNNTGG 1 cut(s) 112
AccII CGCG 2 cut(s) 77, 290
AciI CCGC 2 cut(s) 77, 92
AclWI GGATC 4 cut(s) 5, 35, 48, 278
AcoI YGGCCR 1 cut(s) 78
AfiI CCNNNNNNNGG 3 cut(s) 112, 183, 425
AgsI TTSAA 2 cut(s) 217, 240
AjnI CCWGG 1 cut(s) 80
AleI CACNNNNGTG 1 cut(s) 153
AluBI AGCT 3 cut(s) 236, 431, 438
AluI AGCT 3 cut(s) 236, 431, 438
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 4 cut(s) 5, 35, 48, 278
AoxI GGCC 2 cut(s) 78, 114
ApeKI GCWGC 2 cut(s) 89, 120
Asp700I GAANNNNTTC 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 103
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 1 cut(s) 20
AvaII GGWCC 1 cut(s) 103
BamHI GGATCC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 390
BbsI GAAGAC 1 cut(s) 218
BbvI GCAGC 2 cut(s) 101, 132
BccI CCATC 2 cut(s) 22, 119
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 82
BciVI GTATCC 1 cut(s) 378
BcnI CCSGG 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 2 cut(s) 118, 263
BfuI GTATCC 1 cut(s) 378
BisI GCNGC 3 cut(s) 78, 90, 121
BlsI GCNGC 3 cut(s) 79, 91, 122
Bme1390I CCNGG 2 cut(s) 82, 372
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 3 cut(s) 42, 189, 392
BmrFI CCNGG 2 cut(s) 82, 372
BmsI GCATC 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 447
BpuMI CCSGG 1 cut(s) 372
BsaBI GATNNNNATC 2 cut(s) 9, 45
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 183, 425
Bse1I ACTGG 1 cut(s) 430
Bse8I GATNNNNATC 2 cut(s) 9, 45
BseBI CCWGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 10, 14
BseJI GATNNNNATC 2 cut(s) 9, 45
BseLI CCNNNNNNNGG 3 cut(s) 112, 183, 425
BseNI ACTGG 1 cut(s) 430
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 2 cut(s) 101, 132
BsgI GTGCAG 1 cut(s) 269
Bsh1236I CGCG 2 cut(s) 77, 290
BshFI GGCC 2 cut(s) 80, 116
BshNI GGYRCC 1 cut(s) 390
BsiSI CCGG 1 cut(s) 372
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 3 cut(s) 112, 183, 425
BsmAI GTCTC 1 cut(s) 198
BsmBI CGTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 318
BsnI GGCC 2 cut(s) 80, 116
Bsp143I GATC 3 cut(s) 10, 40, 270
BspACI CCGC 2 cut(s) 77, 92
BspANI GGCC 2 cut(s) 80, 116
BspFNI CGCG 2 cut(s) 77, 290
BspLI GGNNCC 3 cut(s) 42, 189, 392
BspMAI CTGCAG 2 cut(s) 122, 267
BspPI GGATC 4 cut(s) 5, 35, 48, 278
BspT107I GGYRCC 1 cut(s) 390
BsrI ACTGG 1 cut(s) 430
BssMI GATC 3 cut(s) 10, 40, 270
Bst2UI CCWGG 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 247
BstC8I GCNNGC 2 cut(s) 118, 389
BstF5I GGATG 2 cut(s) 10, 14
BstFNI CGCG 2 cut(s) 77, 290
BstKTI GATC 3 cut(s) 13, 43, 273
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 3 cut(s) 10, 40, 270
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 80, 370
BstSFI CTRYAG 2 cut(s) 118, 263
BstUI CGCG 2 cut(s) 77, 290
BstV1I GCAGC 2 cut(s) 101, 132
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BsuI GTATCC 1 cut(s) 378
BsuRI GGCC 2 cut(s) 80, 116
BtgZI GCGATG 2 cut(s) 138, 305
BtsCI GGATG 2 cut(s) 10, 14
BtsIMutI CAGTG 2 cut(s) 160, 423
Cac8I GCNNGC 2 cut(s) 118, 389
Cfr13I GGNCC 1 cut(s) 103
CseI GACGC 1 cut(s) 130
CviJI RGCY 8 cut(s) 65, 80, 116, 190, 236, 344, 431, 438
CviKI_1 RGCY 8 cut(s) 65, 80, 116, 190, 236, 344, 431, 438
DpnI GATC 3 cut(s) 12, 42, 272
DpnII GATC 3 cut(s) 10, 40, 270
EaeI YGGCCR 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 80
Esp3I CGTCTC 1 cut(s) 198
FaqI GGGAC 1 cut(s) 108
FauI CCCGC 1 cut(s) 85
FauNDI CATATG 1 cut(s) 398
Fnu4HI GCNGC 3 cut(s) 78, 90, 121
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 78, 90, 121
FspBI CTAG 1 cut(s) 53
GluI GCNGC 3 cut(s) 78, 90, 121
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 2 cut(s) 80, 116
HapII CCGG 1 cut(s) 372
HgaI GACGC 1 cut(s) 130
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 2 cut(s) 46, 72
HpaI GTTAAC 1 cut(s) 286
HpaII CCGG 1 cut(s) 372
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 286, 415
Hpy188I TCNGA 2 cut(s) 19, 45
Hpy188III TCNNGA 3 cut(s) 240, 305, 347
Hpy8I GTNNAC 2 cut(s) 286, 415
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 4 cut(s) 120, 250, 265, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
KspAI GTTAAC 1 cut(s) 286
Kzo9I GATC 3 cut(s) 10, 40, 270
LmnI GCTCC 3 cut(s) 187, 233, 428
LpnPI CCDG 9 cut(s) 67, 86, 94, 130, 215, 251, 373, 385, 411
Lsp1109I GCAGC 2 cut(s) 101, 132
LweI GCATC 1 cut(s) 435
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 2 cut(s) 146, 197
MalI GATC 3 cut(s) 12, 42, 272
MboI GATC 3 cut(s) 10, 40, 270
MboII GAAGA 1 cut(s) 218
MflI RGATCY 1 cut(s) 40
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 5 cut(s) 52, 55, 268, 301, 404
MroXI GAANNNNTTC 1 cut(s) 212
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 3 cut(s) 153, 303, 401
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 2 cut(s) 82, 372
Mva1269I GAATGC 1 cut(s) 318
MvaI CCWGG 1 cut(s) 82
MvnI CGCG 2 cut(s) 77, 290
MwoI GCNNNNNNNGC 1 cut(s) 86
NciI CCSGG 1 cut(s) 372
NdeI CATATG 1 cut(s) 398
NdeII GATC 3 cut(s) 10, 40, 270
NlaIV GGNNCC 3 cut(s) 42, 189, 392
NmuCI GTSAC 1 cut(s) 146
OliI CACNNNNGTG 1 cut(s) 153
PctI GAATGC 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 212
PfeI GAWTC 1 cut(s) 46
PflMI CCANNNNNTGG 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 370
PkrI GCNGC 3 cut(s) 79, 91, 122
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 3 cut(s) 42, 189, 392
PspPI GGNCC 1 cut(s) 103
PstI CTGCAG 2 cut(s) 122, 267
PsuI RGATCY 1 cut(s) 40
RseI CAYNNNNRTG 3 cut(s) 153, 303, 401
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 3 cut(s) 78, 90, 121
Sau3AI GATC 3 cut(s) 10, 40, 270
Sau96I GGNCC 1 cut(s) 103
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 2 cut(s) 82, 372
SetI ASST 8 cut(s) 86, 179, 204, 238, 361, 396, 433, 440
SfaNI GCATC 1 cut(s) 435
SfcI CTRYAG 2 cut(s) 118, 263
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 3 cut(s) 153, 303, 401
SsiI CCGC 2 cut(s) 77, 92
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 80, 370
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 273
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 1 cut(s) 46
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 2 cut(s) 160, 430
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 2 cut(s) 89, 120
Tsp45I GTSAC 1 cut(s) 146
TspRI CASTG 2 cut(s) 160, 430
Van91I CCANNNNNTGG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
XmnI GAANNNNTTC 1 cut(s) 212
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.