Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0012669

Physical Location & Seq

Genomic Coordinates Forward (+)

55586897 .. 55588105

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG330800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTGTCACTGTCGTGAGGGAATGAAACATTTGGAGATATGTGGAACATTGGCTCACAAATATAAAGGTTATTGGTATCCCAGAGTAGTGGTGGGCAGGCACCTCATATGTGTGAGTAATGCCCACCCTATCACGGGAGCTTATAGCTGTAGGATGCTTTATGTGTATGACATTGGACGGATGCGGTGGATGCAGCGTCCGGTGCAGGGCCTGGTCATGAACAGTTACATGCTTCCATTCCAGAGGGATCAGGATGTTGGGATGACGGCTTTGATAAAAGTCGGTCCTCATCGGTATGCACTCGTGTGGTCTCGCGAGTGCACCATTGAGGACTTTCAATTCGAAATTCATTGGTGTAAGTTTGATCTTCGACTGCATCACGGAGTCATTGAAGGAAAAACTGTATTGGATGATTACTTCTCAGCCGTAAGGGTGGCACATGGGATGTGTATGTTTGAAGATGTTGGATTTGACACAACCTTGCTTAACATCACCTCTGATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

19.58

Weight (kDa)

7.64

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012669)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G053200_v2.0.a1
rosa_laevigata	RLG00000027348
rosa_roxburghii	Rroxscaffold_4G00290060 Rroxscaffold_4G00290070 Rroxscaffold_4G00290210 Rroxscaffold_4G00290400 Rroxscaffold_4G00290410
rosa_rugosa	Rorug01G0328100 Rorug01G0329300
rosa_samantha	Rh1AG337600 Rh1AG337700 Rh1BG297900 Rh1BG299000 Rh1BG299100 Rh1CG313600 Rh1CG314300 Rh1DG329400 Rh1DG330700 Rh1DG330800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	99
AccII	CGCG	1 cut(s)	315
AciI	CCGC	1 cut(s)	184
AclWI	GGATC	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	345
AfiI	CCNNNNNNNGG	3 cut(s)	133, 134, 206
AgsI	TTSAA	3 cut(s)	338, 392, 458
AjnI	CCWGG	1 cut(s)	210
AleI	CACNNNNGTG	2 cut(s)	12, 304
AluBI	AGCT	2 cut(s)	140, 147
AluI	AGCT	2 cut(s)	140, 147
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	315
Alw44I	GTGCAC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	255
AlwNI	CAGNNNCTG	1 cut(s)	211
AoxI	GGCC	1 cut(s)	208
ApaLI	GTGCAC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	193
ApoI	RAATTY	1 cut(s)	345
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspS9I	GGNCC	2 cut(s)	208, 284
AsuHPI	GGTGA	1 cut(s)	484
AsuII	TTCGAA	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	99
BauI	CACGAG	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	205
BceAI	ACGGC	2 cut(s)	282, 410
BciT130I	CCWGG	1 cut(s)	212
BciVI	GTATCC	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	148
BfuI	GTATCC	1 cut(s)	87
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	208, 284
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	4 cut(s)	144, 171, 180, 385
Bpu14I	TTCGAA	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 134, 206
BseBI	CCWGG	1 cut(s)	212
BseGI	GGATG	7 cut(s)	159, 186, 195, 259, 267, 415, 450
BseLI	CCNNNNNNNGG	3 cut(s)	133, 134, 206
BseMII	CTCAG	1 cut(s)	435
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	205
BsgI	GTGCAG	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	3 cut(s)	133, 134, 206
BsmAI	GTCTC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	210
Bso31I	GGTCTC	1 cut(s)	315
Bsp119I	TTCGAA	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	2 cut(s)	247, 364
Bsp68I	TCGCGA	1 cut(s)	315
BspACI	CCGC	1 cut(s)	184
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	434
BspFNI	CGCG	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	101
BspPI	GGATC	1 cut(s)	255
BspT104I	TTCGAA	1 cut(s)	342
BspT107I	GGYRCC	1 cut(s)	99
BspTNI	GGTCTC	1 cut(s)	315
BssMI	GATC	2 cut(s)	247, 364
BssSI	CACGAG	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	3 cut(s)	11, 224, 403
BstBI	TTCGAA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	421
BstF5I	GGATG	7 cut(s)	159, 186, 195, 259, 267, 415, 450
BstFNI	CGCG	1 cut(s)	315
BstKTI	GATC	2 cut(s)	250, 367
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	2 cut(s)	247, 364
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 202
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	210
BstSFI	CTRYAG	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	323
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	205
BstXI	CCANNNNNNTGG	1 cut(s)	88
BsuI	GTATCC	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	7 cut(s)	159, 186, 195, 259, 267, 415, 450
BtsIMutI	CAGTG	1 cut(s)	7
BtuMI	TCGCGA	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	98
CaiI	CAGNNNCTG	1 cut(s)	211
CciI	TCATGA	1 cut(s)	216
Cfr13I	GGNCC	2 cut(s)	208, 284
CseI	GACGC	1 cut(s)	185
CviAII	CATG	3 cut(s)	217, 229, 440
CviJI	RGCY	6 cut(s)	53, 140, 147, 210, 269, 425
CviKI_1	RGCY	6 cut(s)	53, 140, 147, 210, 269, 425
DdeI	CTNAG	1 cut(s)	421
DpnI	GATC	2 cut(s)	249, 366
DpnII	GATC	2 cut(s)	247, 364
Eco31I	GGTCTC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	220, 232, 443
FatI	CATG	3 cut(s)	216, 228, 439
FauNDI	CATATG	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	7 cut(s)	166, 193, 202, 266, 274, 422, 457
Fsp4HI	GCNGC	1 cut(s)	194
GluI	GCNGC	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	220, 232, 443
HinfI	GANTC	1 cut(s)	384
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	1 cut(s)	499
Hpy188III	TCNNGA	5 cut(s)	14, 217, 241, 251, 314
Hpy8I	GTNNAC	1 cut(s)	321
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	3 cut(s)	11, 224, 403
HpyCH4V	TGCA	5 cut(s)	193, 205, 299, 321, 376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 202
HpyF3I	CTNAG	1 cut(s)	421
Hsp92II	CATG	3 cut(s)	220, 232, 443
Kzo9I	GATC	2 cut(s)	247, 364
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	8 cut(s)	82, 94, 191, 197, 213, 224, 236, 254
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	4 cut(s)	144, 171, 180, 385
MaeIII	GTNAC	2 cut(s)	5, 224
MalI	GATC	2 cut(s)	249, 366
MboI	GATC	2 cut(s)	247, 364
MboII	GAAGA	2 cut(s)	359, 470
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	2 cut(s)	338, 345
MlyI	GAGTC	1 cut(s)	393
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	6 cut(s)	10, 113, 237, 297, 322, 505
MseI	TTAA	1 cut(s)	486
MslI	CAYNNNNRTG	4 cut(s)	12, 110, 294, 304
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	2 cut(s)	190, 202
NdeI	CATATG	1 cut(s)	107
NdeII	GATC	2 cut(s)	247, 364
NlaIII	CATG	3 cut(s)	220, 232, 443
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	5
NruI	TCGCGA	1 cut(s)	315
NspI	RCATGY	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	342
OliI	CACNNNNGTG	2 cut(s)	12, 304
PagI	TCATGA	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	195
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	2 cut(s)	208, 284
PstNI	CAGNNNCTG	1 cut(s)	211
RruI	TCGCGA	1 cut(s)	315
RseI	CAYNNNNRTG	4 cut(s)	12, 110, 294, 304
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	2 cut(s)	247, 364
Sau96I	GGNCC	2 cut(s)	208, 284
SchI	GAGTC	1 cut(s)	393
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	6 cut(s)	70, 105, 142, 149, 482, 497
SfaNI	GCATC	4 cut(s)	144, 171, 180, 385
SfcI	CTRYAG	1 cut(s)	148
SfuI	TTCGAA	1 cut(s)	342
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	4 cut(s)	12, 110, 294, 304
Sse9I	AATT	2 cut(s)	338, 345
SsiI	CCGC	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	3 cut(s)	11, 224, 403
TaqI	TCGA	2 cut(s)	342, 370
TaqII	GACCGA	1 cut(s)	272
TasI	AATT	2 cut(s)	338, 345
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	38, 233, 338
TspGWI	ACGGA	2 cut(s)	193, 396
TspRI	CASTG	1 cut(s)	14
VneI	GTGCAC	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	1 cut(s)	345
XceI	RCATGY	1 cut(s)	232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.