Rh1BG299000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0012669
Physical Location & Seq
Forward (+)
43421270 .. 43421440
171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG299000.1

Sequence Viewer

Length: 171 bp
ATGGATGATGACCCATCCGAAGTGGGTGTGTCGTTTTTGGATCTGAATCAACTAGAGGAGGAGGCTTGGAGAGTCACGGCCAGGTTCGCAGCGGGACAACAGGACCACGCGTTGGCCTGCAGCGATGGTTGGATATGTAGCCAAAAAATTCTTTGGCCAGCCGAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.26

Weight (kDa)

4.05

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 112
AccII CGCG 1 cut(s) 110
AciI CCGC 1 cut(s) 92
AclWI GGATC 1 cut(s) 48
AcoI YGGCCR 2 cut(s) 78, 155
AcsI RAATTY 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 112
AflIII ACRYGT 1 cut(s) 108
AjnI CCWGG 1 cut(s) 80
AlwI GGATC 1 cut(s) 48
AoxI GGCC 3 cut(s) 78, 114, 155
ApeKI GCWGC 2 cut(s) 89, 120
ApoI RAATTY 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 103
AvaII GGWCC 1 cut(s) 103
BalI TGGCCA 1 cut(s) 157
BbvI GCAGC 2 cut(s) 101, 132
BccI CCATC 2 cut(s) 22, 119
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 82
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 118
BisI GCNGC 2 cut(s) 90, 121
BlsI GCNGC 2 cut(s) 91, 122
Bme1390I CCNGG 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 82
BsaBI GATNNNNATC 1 cut(s) 45
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 45
BseBI CCWGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 10, 14
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 112
BseRI GAGGAG 2 cut(s) 71, 74
BseXI GCAGC 2 cut(s) 101, 132
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 3 cut(s) 80, 116, 157
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 108
BsnI GGCC 3 cut(s) 80, 116, 157
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 1 cut(s) 92
BspANI GGCC 3 cut(s) 80, 116, 157
BspFNI CGCG 1 cut(s) 110
BspMAI CTGCAG 1 cut(s) 122
BspPI GGATC 1 cut(s) 48
BssMI GATC 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 118, 159
BstF5I GGATG 2 cut(s) 10, 14
BstFNI CGCG 1 cut(s) 110
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 118
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 101, 132
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BsuRI GGCC 3 cut(s) 80, 116, 157
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 2 cut(s) 10, 14
Cac8I GCNNGC 2 cut(s) 118, 159
Cfr13I GGNCC 1 cut(s) 103
CviJI RGCY 6 cut(s) 65, 80, 116, 141, 157, 161
CviKI_1 RGCY 6 cut(s) 65, 80, 116, 141, 157, 161
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
EaeI YGGCCR 2 cut(s) 78, 155
Eco47I GGWCC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 80
FaiI YATR 1 cut(s) 136
FaqI GGGAC 1 cut(s) 108
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 90, 121
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 90, 121
FspBI CTAG 1 cut(s) 53
GluI GCNGC 2 cut(s) 90, 121
HaeIII GGCC 3 cut(s) 80, 116, 157
HinfI GANTC 2 cut(s) 46, 72
Hpy188I TCNGA 2 cut(s) 19, 45
HpyCH4V TGCA 1 cut(s) 120
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 4 cut(s) 67, 86, 94, 130
Lsp1109I GCAGC 2 cut(s) 101, 132
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 73
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MflI RGATCY 1 cut(s) 40
MlsI TGGCCA 1 cut(s) 157
MluCI AATT 1 cut(s) 147
MluI ACGCGT 1 cut(s) 108
MluNI TGGCCA 1 cut(s) 157
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 3 cut(s) 49, 52, 55
Mox20I TGGCCA 1 cut(s) 157
MscI TGGCCA 1 cut(s) 157
Msp20I TGGCCA 1 cut(s) 157
MspA1I CMGCKG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 82
MvaI CCWGG 1 cut(s) 82
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 46
PflMI CCANNNNNTGG 1 cut(s) 112
PkrI GCNGC 2 cut(s) 91, 122
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PspPI GGNCC 1 cut(s) 103
PstI CTGCAG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 40
SatI GCNGC 2 cut(s) 90, 121
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 103
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 82
SetI ASST 1 cut(s) 86
SfcI CTRYAG 1 cut(s) 118
SinI GGWCC 1 cut(s) 103
Sse9I AATT 1 cut(s) 147
SsiI CCGC 1 cut(s) 92
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 80
TasI AATT 1 cut(s) 147
TfiI GAWTC 1 cut(s) 46
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 2 cut(s) 89, 120
Tsp45I GTSAC 1 cut(s) 73
Van91I CCANNNNNTGG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 1 cut(s) 147
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.