Rroxscaffold_4G00290400

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012669
Physical Location & Seq
Reverse (-)
10922648 .. 10923790
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00290400.1

Sequence Viewer

Length: 723 bp
ATGAGTCGTAATCGGCACCTAAAAGCAATTGAGATTCGTAATGCCCCTCTCCTGGCTTTACTGTCATATGTTGGGCGTCCTATAGATGTGGTTGTTGAGAATGTGCCACTATTGAGTGAGGCCAACCTTTCCTACCGTCCATCCAACAAAGATTGCATCGCACTCCCTTTCAGCCAACTTTCATCTTGTATTTCTCAGCTACACACTCTCATGATGGACATCCATTGCATGGACGTGAAGGTCTATAAGGAGAATCATGAAATCCCTGAATTACCAAATCTCAAGTGCTTTGAATTGGTAGTTTATGCAGATGAATGCTGGGGTAGTCTTCGTATGTTGGCCTCTTTCCTCAAGGCATTCCCTCGTTTGGGCACTCTTGTGTTGAAGATGGAATTCTTAGATTCTTATTTTAGTTGTGATCCACGCACATCATACATACCGAGATATGGAGAGAAAGTTACCACATACCCACATCGTTACCTAAAGGTATTAGAAATAGTAAGGCATCGCCATCGTTTAAATGCTGTGGAACATGTGAGACACGTGATAGAGACTGCTATTGCTCTGGAGAAAATTGTTATTAATCCTGTTCATTGGGAATTTCATCATACTGGAGCTGATAGGAGAAAAGAACATGCCTTGATGGAGGAAGTTGCAAGAAAAGGTGCTGTGGACATGCTAAAAAAAGAAGTGCCTTCAACAATAGAATTCGTGGTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

240

Amino Acids

27.77

Weight (kDa)

8.19

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 5 - 240 2.3e-10 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 15
AccB7I CCANNNNNTGG 1 cut(s) 229
AclWI GGATC 1 cut(s) 413
AcsI RAATTY 3 cut(s) 392, 599, 707
AcvI CACGTG 1 cut(s) 544
AcyI GRCGYC 1 cut(s) 76
AfiI CCNNNNNNNGG 5 cut(s) 52, 229, 367, 368, 446
AflIII ACRYGT 2 cut(s) 532, 541
AgsI TTSAA 3 cut(s) 293, 385, 699
AjiI CACGTC 1 cut(s) 235
AjnI CCWGG 1 cut(s) 51
AleI CACNNNNGTG 1 cut(s) 377
AluBI AGCT 2 cut(s) 199, 617
AluI AGCT 2 cut(s) 199, 617
Alw26I GTCTC 2 cut(s) 532, 545
AlwI GGATC 1 cut(s) 413
AoxI GGCC 2 cut(s) 120, 339
ApoI RAATTY 3 cut(s) 392, 599, 707
AseI ATTAAT 1 cut(s) 582
BaeGI GKGCMC 1 cut(s) 374
BanI GGYRCC 1 cut(s) 15
BbrPI CACGTG 1 cut(s) 544
BbsI GAAGAC 1 cut(s) 320
BccI CCATC 5 cut(s) 148, 208, 382, 519, 637
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 532, 545
BfmI CTRYAG 1 cut(s) 81
Bme1390I CCNGG 1 cut(s) 53
BmgBI CACGTC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 2 cut(s) 165, 514
BpiI GAAGAC 1 cut(s) 320
BpmI CTGGAG 2 cut(s) 587, 633
BpuEI CTTGAG 2 cut(s) 266, 335
BsaAI YACGTR 1 cut(s) 544
BsaBI GATNNNNATC 1 cut(s) 218
BsaHI GRCGYC 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 229, 367, 368, 446
Bse1I ACTGG 1 cut(s) 616
Bse3DI GCAATG 1 cut(s) 223
Bse8I GATNNNNATC 1 cut(s) 218
BseBI CCWGG 1 cut(s) 53
BseGI GGATG 2 cut(s) 140, 219
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 5 cut(s) 52, 229, 367, 368, 446
BseMI GCAATG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 616
BseSI GKGCMC 1 cut(s) 374
BseYI CCCAGC 1 cut(s) 318
BshFI GGCC 2 cut(s) 122, 341
BshNI GGYRCC 1 cut(s) 15
BslI CCNNNNNNNGG 5 cut(s) 52, 229, 367, 368, 446
BsmAI GTCTC 2 cut(s) 532, 545
BsmI GAATGC 2 cut(s) 320, 356
BsnI GGCC 2 cut(s) 122, 341
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 1 cut(s) 418
BspANI GGCC 2 cut(s) 122, 341
BspCNI CTCAG 1 cut(s) 208
BspHI TCATGA 2 cut(s) 210, 256
BspLI GGNNCC 1 cut(s) 17
BspPI GGATC 1 cut(s) 413
BspT107I GGYRCC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 223
BsrI ACTGG 1 cut(s) 616
BssMI GATC 1 cut(s) 418
BssNI GRCGYC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 63, 137
BstACI GRCGYC 1 cut(s) 76
BstBAI YACGTR 1 cut(s) 544
BstDEI CTNAG 2 cut(s) 195, 397
BstF5I GGATG 2 cut(s) 140, 219
BstKTI GATC 1 cut(s) 421
BstMAI GTCTC 2 cut(s) 532, 545
BstMBI GATC 1 cut(s) 418
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 3 cut(s) 536, 638, 679
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 374
BstV2I GAAGAC 1 cut(s) 320
BsuRI GGCC 2 cut(s) 122, 341
BtgZI GCGATG 2 cut(s) 142, 491
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 2 cut(s) 140, 219
CciI TCATGA 2 cut(s) 210, 256
CseI GACGC 1 cut(s) 65
CviAII CATG 6 cut(s) 211, 229, 257, 533, 635, 676
CviJI RGCY 6 cut(s) 56, 122, 174, 199, 341, 617
CviKI_1 RGCY 6 cut(s) 56, 122, 174, 199, 341, 617
DdeI CTNAG 2 cut(s) 195, 397
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
DraI TTTAAA 1 cut(s) 519
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eco72I CACGTG 1 cut(s) 544
EcoRI GAATTC 2 cut(s) 392, 707
EcoRII CCWGG 1 cut(s) 51
FaeI CATG 6 cut(s) 214, 232, 260, 536, 638, 679
FatI CATG 6 cut(s) 210, 228, 256, 532, 634, 675
FauNDI CATATG 1 cut(s) 67
FokI GGATG 2 cut(s) 127, 206
GsaI CCCAGC 1 cut(s) 322
GsuI CTGGAG 2 cut(s) 587, 633
HaeIII GGCC 2 cut(s) 122, 341
HgaI GACGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 76
Hin1II CATG 6 cut(s) 214, 232, 260, 536, 638, 679
HinfI GANTC 4 cut(s) 4, 34, 253, 401
Hpy166II GTNNAC 1 cut(s) 673
Hpy188III TCNNGA 3 cut(s) 211, 257, 566
Hpy8I GTNNAC 1 cut(s) 673
HpyAV CCTTC 2 cut(s) 232, 705
HpyCH4III ACNGT 2 cut(s) 63, 137
HpyCH4IV ACGT 2 cut(s) 234, 543
HpyCH4V TGCA 4 cut(s) 156, 228, 308, 656
HpyF3I CTNAG 2 cut(s) 195, 397
HpySE526I ACGT 2 cut(s) 234, 543
Hsp92I GRCGYC 1 cut(s) 76
Hsp92II CATG 6 cut(s) 214, 232, 260, 536, 638, 679
Kzo9I GATC 1 cut(s) 418
LmnI GCTCC 1 cut(s) 614
LpnPI CCDG 7 cut(s) 38, 65, 279, 304, 551, 597, 600
LweI GCATC 2 cut(s) 165, 514
MaeII ACGT 2 cut(s) 234, 543
MaeIII GTNAC 2 cut(s) 457, 476
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 2 cut(s) 320, 397
MfeI CAATTG 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 7 cut(s) 27, 269, 293, 392, 573, 599, 707
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 6 cut(s) 57, 112, 352, 359, 372, 640
MseI TTAA 2 cut(s) 518, 582
MslI CAYNNNNRTG 3 cut(s) 209, 233, 377
MspR9I CCNGG 1 cut(s) 53
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 2 cut(s) 320, 356
MvaI CCWGG 1 cut(s) 53
NdeI CATATG 1 cut(s) 67
NdeII GATC 1 cut(s) 418
NlaIII CATG 6 cut(s) 214, 232, 260, 536, 638, 679
NlaIV GGNNCC 1 cut(s) 17
NspI RCATGY 3 cut(s) 536, 638, 679
OliI CACNNNNGTG 1 cut(s) 377
PagI TCATGA 2 cut(s) 210, 256
PciI ACATGT 1 cut(s) 532
PctI GAATGC 2 cut(s) 320, 356
PfeI GAWTC 3 cut(s) 34, 253, 401
PflMI CCANNNNNTGG 1 cut(s) 229
PleI GAGTC 1 cut(s) 12
PmaCI CACGTG 1 cut(s) 544
PmlI CACGTG 1 cut(s) 544
PpsI GAGTC 1 cut(s) 12
Ppu21I YACGTR 1 cut(s) 544
PscI ACATGT 1 cut(s) 532
PshBI ATTAAT 1 cut(s) 582
Psp6I CCWGG 1 cut(s) 51
PspCI CACGTG 1 cut(s) 544
PspFI CCCAGC 1 cut(s) 318
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 17
RseI CAYNNNNRTG 3 cut(s) 209, 233, 377
SaqAI TTAA 2 cut(s) 518, 582
Sau3AI GATC 1 cut(s) 418
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 1 cut(s) 374
SfaNI GCATC 2 cut(s) 165, 514
SfcI CTRYAG 1 cut(s) 81
SmiMI CAYNNNNRTG 3 cut(s) 209, 233, 377
SmlI CTYRAG 2 cut(s) 281, 350
SmoI CTYRAG 2 cut(s) 281, 350
Sse9I AATT 7 cut(s) 27, 269, 293, 392, 573, 599, 707
StyD4I CCNGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 63, 137
TaiI ACGT 2 cut(s) 237, 546
TasI AATT 7 cut(s) 27, 269, 293, 392, 573, 599, 707
TfiI GAWTC 3 cut(s) 34, 253, 401
Tru1I TTAA 2 cut(s) 518, 582
Tru9I TTAA 2 cut(s) 518, 582
TspDTI ATGAA 5 cut(s) 171, 273, 327, 581, 593
Van91I CCANNNNNTGG 1 cut(s) 229
VspI ATTAAT 1 cut(s) 582
XapI RAATTY 3 cut(s) 392, 599, 707
XceI RCATGY 3 cut(s) 536, 638, 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.