Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012669

Physical Location & Seq

Genomic Coordinates Reverse (-)

10923894 .. 10924340

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCAATGGCTACTAGCAGCCTTTGTAAGGAATTTCGATCGATATATGTGGAGGTCTATTGACTCGCTAGATTTTGATGCGGCTGAAATCCTACGGGGATTCTTGGCGGAGAAGGACCGGGAAGTGAGAGACCGGAAAACCCTTGATTATGTAAACTGGGTTACTCGTGTAGTGAGACAGCTTACGGAGGAGGATGGCAATTTGAAACTTTTCAGGGCTTGTTTTTGTGGAATCGATGAGAGGTATAGGAGTGAAATTGATGAATGGGTTCAGTTTGCGATGATAAGGAGGGTTGAAGTTCTGGAATTGGAATTTCTGGCAGATTGTTCTGCTAACTTTTACCTTTTTCCACACAAGTTAACAGGCTTTGACAGCCTCAAAGCTCTAGAATTGGAATTTGTGGATGTGACACAAGATACCCTCGACGACTTGGTGCGTAACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

148

Amino Acids

17.75

Weight (kDa)

4.67

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012669)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G053200_v2.0.a1
rosa_laevigata	RLG00000027348
rosa_roxburghii	Rroxscaffold_4G00290060 Rroxscaffold_4G00290070 Rroxscaffold_4G00290210 Rroxscaffold_4G00290400 Rroxscaffold_4G00290410
rosa_rugosa	Rorug01G0328100 Rorug01G0329300
rosa_samantha	Rh1AG337600 Rh1AG337700 Rh1BG297900 Rh1BG299000 Rh1BG299100 Rh1CG313600 Rh1CG314300 Rh1DG329400 Rh1DG330700 Rh1DG330800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	80, 107
AcsI	RAATTY	3 cut(s)	31, 311, 395
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	2 cut(s)	205, 296
AluBI	AGCT	2 cut(s)	181, 383
AluI	AGCT	2 cut(s)	181, 383
Alw26I	GTCTC	2 cut(s)	123, 169
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	3 cut(s)	31, 311, 395
Asp700I	GAANNNNTTC	2 cut(s)	209, 267
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	115
BauI	CACGAG	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	2 cut(s)	123, 169
BfaI	CTAG	3 cut(s)	14, 68, 386
BisI	GCNGC	2 cut(s)	18, 81
BlsI	GCNGC	2 cut(s)	19, 82
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	119
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	1 cut(s)	67
BmuI	ACTGGG	1 cut(s)	166
BpuMI	CCSGG	1 cut(s)	119
Bsa29I	ATCGAT	2 cut(s)	40, 234
BsaI	GGTCTC	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	11
BseCI	ATCGAT	2 cut(s)	40, 234
BseGI	GGATG	2 cut(s)	199, 409
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	40
BshVI	ATCGAT	2 cut(s)	40, 234
BsiEI	CGRYCG	1 cut(s)	40
BsiSI	CCGG	2 cut(s)	118, 133
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	2 cut(s)	123, 169
Bso31I	GGTCTC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	2 cut(s)	80, 107
BspDI	ATCGAT	2 cut(s)	40, 234
BspTNI	GGTCTC	1 cut(s)	123
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	161
BssMI	GATC	1 cut(s)	37
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
BstENI	CCTNNNNNAGG	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	199, 409
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	2 cut(s)	123, 169
BstMBI	GATC	1 cut(s)	37
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	29
Bsu15I	ATCGAT	2 cut(s)	40, 234
BsuTUI	ATCGAT	2 cut(s)	40, 234
BtgZI	GCGATG	1 cut(s)	293
BtsCI	GGATG	2 cut(s)	199, 409
Cfr13I	GGNCC	1 cut(s)	115
ClaI	ATCGAT	2 cut(s)	40, 234
CviJI	RGCY	8 cut(s)	10, 20, 83, 181, 218, 366, 375, 383
CviKI_1	RGCY	8 cut(s)	10, 20, 83, 181, 218, 366, 375, 383
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
EciI	GGCGGA	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	25
FaiI	YATR	4 cut(s)	45, 47, 150, 246
Fnu4HI	GCNGC	2 cut(s)	18, 81
FokI	GGATG	2 cut(s)	206, 416
Fsp4HI	GCNGC	2 cut(s)	18, 81
FspBI	CTAG	3 cut(s)	14, 68, 386
GluI	GCNGC	2 cut(s)	18, 81
HapII	CCGG	2 cut(s)	118, 133
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	3 cut(s)	62, 99, 231
HpaI	GTTAAC	1 cut(s)	360
HpaII	CCGG	2 cut(s)	118, 133
Hpy166II	GTNNAC	2 cut(s)	154, 360
Hpy188III	TCNNGA	2 cut(s)	302, 386
Hpy8I	GTNNAC	2 cut(s)	154, 360
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	372
KspAI	GTTAAC	1 cut(s)	360
Kzo9I	GATC	1 cut(s)	37
LpnPI	CCDG	7 cut(s)	131, 142, 146, 199, 287, 302, 348
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	3 cut(s)	14, 68, 386
MaeIII	GTNAC	3 cut(s)	160, 406, 437
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MluCI	AATT	7 cut(s)	31, 199, 255, 305, 311, 389, 395
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	7 cut(s)	45, 181, 184, 234, 282, 386, 431
MroXI	GAANNNNTTC	2 cut(s)	209, 267
MseI	TTAA	1 cut(s)	359
MspI	CCGG	2 cut(s)	118, 133
MspR9I	CCNGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	372
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	406
PdmI	GAANNNNTTC	2 cut(s)	209, 267
PfeI	GAWTC	2 cut(s)	99, 231
PkrI	GCNGC	2 cut(s)	19, 82
Ple19I	CGATCG	1 cut(s)	40
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	115
PvuI	CGATCG	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	2 cut(s)	18, 81
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	119
SetI	ASST	5 cut(s)	56, 183, 245, 345, 385
SfaNI	GCATC	1 cut(s)	67
SinI	GGWCC	1 cut(s)	115
Sse9I	AATT	7 cut(s)	31, 199, 255, 305, 311, 389, 395
SsiI	CCGC	2 cut(s)	80, 107
SspMI	CTAG	3 cut(s)	14, 68, 386
StyD4I	CCNGG	1 cut(s)	117
TaqI	TCGA	4 cut(s)	36, 40, 234, 423
TasI	AATT	7 cut(s)	31, 199, 255, 305, 311, 389, 395
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	99, 231
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	115
XagI	CCTNNNNNAGG	1 cut(s)	25
XapI	RAATTY	3 cut(s)	31, 311, 395
XbaI	TCTAGA	1 cut(s)	385
XmnI	GAANNNNTTC	2 cut(s)	209, 267
XspI	CTAG	3 cut(s)	14, 68, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.