Rh1DG329400

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
55472470 .. 55473506
1037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG329400.1

Sequence Viewer

Length: 336 bp
ATGGAATTCTTAGATTCTTATTTTAGTTGTGATCCACGCACATCATACATACCGAGATATGGAGAGAAAGTTACCACATACCCACATCGTTACCTAAAGGTATTAGAAATAGTAAGGTATCGCCATCGTTTAAATGCTGTGGAACATGTGAGACACGTGATAGAGACTGCTATTGCTCTGGAGAAAATTGTTATTAATCCTGTTCATTGGGAATTTCATCATACTGGAGCTGATAGGAGAAAAGAACATGCCTTGATGGAGGAAGTTGCAAGAAAAGGTGCTGTGGACATGCTGAAAAAAGAAGTGCCTTCAACAATAGAATTCGTGGTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

13.16

Weight (kDa)

7.94

Isoelectric Point (pI)

22.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 26
AcsI RAATTY 3 cut(s) 5, 212, 320
AcvI CACGTG 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 59
AflIII ACRYGT 2 cut(s) 145, 154
AgsI TTSAA 1 cut(s) 312
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw26I GTCTC 2 cut(s) 145, 158
AlwI GGATC 1 cut(s) 26
ApoI RAATTY 3 cut(s) 5, 212, 320
AseI ATTAAT 1 cut(s) 195
BbrPI CACGTG 1 cut(s) 157
BccI CCATC 2 cut(s) 132, 250
BcoDI GTCTC 2 cut(s) 145, 158
BpmI CTGGAG 2 cut(s) 200, 246
BsaAI YACGTR 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 2 cut(s) 145, 158
Bsp143I GATC 1 cut(s) 31
BspPI GGATC 1 cut(s) 26
BsrI ACTGG 1 cut(s) 229
BssMI GATC 1 cut(s) 31
BstBAI YACGTR 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 10
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 2 cut(s) 145, 158
BstMBI GATC 1 cut(s) 31
BstNSI RCATGY 3 cut(s) 149, 251, 292
CviAII CATG 3 cut(s) 146, 248, 289
CviJI RGCY 1 cut(s) 230
CviKI_1 RGCY 1 cut(s) 230
DdeI CTNAG 1 cut(s) 10
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
DraI TTTAAA 1 cut(s) 132
Eco72I CACGTG 1 cut(s) 157
EcoRI GAATTC 2 cut(s) 5, 320
FaeI CATG 3 cut(s) 149, 251, 292
FaiI YATR 8 cut(s) 46, 50, 60, 79, 147, 222, 249, 290
FatI CATG 3 cut(s) 145, 247, 288
GsuI CTGGAG 2 cut(s) 200, 246
Hin1II CATG 3 cut(s) 149, 251, 292
HinfI GANTC 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 286
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 1 cut(s) 318
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 3 cut(s) 149, 251, 292
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 3 cut(s) 164, 210, 213
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 70, 89
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MluCI AATT 4 cut(s) 5, 186, 212, 320
MnlI CCTC 1 cut(s) 253
MseI TTAA 2 cut(s) 131, 195
NdeII GATC 1 cut(s) 31
NlaIII CATG 3 cut(s) 149, 251, 292
NspI RCATGY 3 cut(s) 149, 251, 292
PciI ACATGT 1 cut(s) 145
PfeI GAWTC 1 cut(s) 14
PmaCI CACGTG 1 cut(s) 157
PmlI CACGTG 1 cut(s) 157
Ppu21I YACGTR 1 cut(s) 157
PscI ACATGT 1 cut(s) 145
PshBI ATTAAT 1 cut(s) 195
PspCI CACGTG 1 cut(s) 157
SaqAI TTAA 2 cut(s) 131, 195
Sau3AI GATC 1 cut(s) 31
SetI ASST 6 cut(s) 96, 102, 119, 159, 232, 280
Sse9I AATT 4 cut(s) 5, 186, 212, 320
TaiI ACGT 1 cut(s) 159
TasI AATT 4 cut(s) 5, 186, 212, 320
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 2 cut(s) 131, 195
Tru9I TTAA 2 cut(s) 131, 195
TspDTI ATGAA 2 cut(s) 194, 206
VspI ATTAAT 1 cut(s) 195
XapI RAATTY 3 cut(s) 5, 212, 320
XceI RCATGY 3 cut(s) 149, 251, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.