Rorug01G0328100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012669
Physical Location & Seq
Forward (+)
44714401 .. 44715913
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0328100.1

Sequence Viewer

Length: 300 bp
ATGCTGGATCTATTTGACGTTGTCGGAATTGTTCACTTTGGCATAGCTGGCAATGCCAATAACTCTATGTCTATTGGTGATGTTACCATTCCTCAACAGTTTGCTCACACTGGCATATGGGATTGGGTGACAAGCTTGTCAAATGGCTTCCCGGTGATTGTGATCCGAGGGTTATCAGATTTAGCAGGAAGGCAAGCAGGAGAGAACCCGATTCAGACCTTTGGGCCTCTTGCAGCTATAAATGCTTGCAAAGTAGTTGTACAGTTAATCAAGGACCTGCCAGAGGCAGGATATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

99

Amino Acids

10.46

Weight (kDa)

4.64

Isoelectric Point (pI)

17.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 136
Acc36I ACCTGC 1 cut(s) 285
AclWI GGATC 2 cut(s) 15, 157
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 2 cut(s) 283, 287
AluBI AGCT 3 cut(s) 47, 135, 236
AluI AGCT 3 cut(s) 47, 135, 236
AlwI GGATC 2 cut(s) 15, 157
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 224, 274
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 3 cut(s) 89, 139, 166
AvaII GGWCC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 245
BcnI CCSGG 1 cut(s) 152
BfuAI ACCTGC 1 cut(s) 285
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 224, 274
BmrFI CCNGG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 287
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 58
Bse8I GATNNNNATC 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 166
BseJI GATNNNNATC 1 cut(s) 161
BseLI CCNNNNNNNGG 2 cut(s) 283, 287
BseMI GCAATG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 245
BshFI GGCC 1 cut(s) 226
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 283, 287
BsnI GGCC 1 cut(s) 226
Bsp1407I TGTACA 1 cut(s) 259
Bsp143I GATC 2 cut(s) 7, 162
BspANI GGCC 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 285
BspPI GGATC 2 cut(s) 15, 157
BsrDI GCAATG 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 259
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 2 cut(s) 7, 162
Bst4CI ACNGT 2 cut(s) 99, 264
BstAPI GCANNNNNTGC 1 cut(s) 293
BstAUI TGTACA 1 cut(s) 259
BstC8I GCNNGC 3 cut(s) 49, 195, 247
BstENI CCTNNNNNAGG 1 cut(s) 281
BstKTI GATC 2 cut(s) 10, 165
BstMBI GATC 2 cut(s) 7, 162
BstMWI GCNNNNNNNGC 4 cut(s) 48, 53, 242, 293
BstSCI CCNGG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 108
BveI ACCTGC 1 cut(s) 285
Cac8I GCNNGC 3 cut(s) 49, 195, 247
Cfr13I GGNCC 2 cut(s) 224, 274
Csp6I GTAC 1 cut(s) 260
CviJI RGCY 5 cut(s) 47, 135, 147, 226, 236
CviKI_1 RGCY 5 cut(s) 47, 135, 147, 226, 236
CviQI GTAC 1 cut(s) 260
DpnI GATC 2 cut(s) 9, 164
DpnII GATC 2 cut(s) 7, 162
DrdI GACNNNNNNGTC 1 cut(s) 136
DseDI GACNNNNNNGTC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 274
EcoNI CCTNNNNNAGG 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 274
EcoT22I ATGCAT 1 cut(s) 298
FaiI YATR 7 cut(s) 44, 68, 116, 118, 239, 294, 298
FauNDI CATATG 1 cut(s) 116
Fnu4HI GCNGC 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 234
HaeIII GGCC 1 cut(s) 226
HapII CCGG 1 cut(s) 152
HindIII AAGCTT 1 cut(s) 133
HinfI GANTC 1 cut(s) 211
HpaII CCGG 1 cut(s) 152
HphI GGTGA 3 cut(s) 89, 139, 166
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 4 cut(s) 26, 167, 178, 216
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 183
HpyCH4III ACNGT 2 cut(s) 99, 264
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 3 cut(s) 233, 249, 296
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 53, 242, 293
HpySE526I ACGT 1 cut(s) 18
Kzo9I GATC 2 cut(s) 7, 162
LpnPI CCDG 8 cut(s) 33, 96, 165, 171, 183, 273, 290, 294
Lsp1109I GCAGC 1 cut(s) 245
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 82, 127
MalI GATC 2 cut(s) 9, 164
MboI GATC 2 cut(s) 7, 162
MflI RGATCY 1 cut(s) 7
MluCI AATT 1 cut(s) 27
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 4 cut(s) 102, 161, 237, 277
Mph1103I ATGCAT 1 cut(s) 298
MseI TTAA 1 cut(s) 266
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 152
MwoI GCNNNNNNNGC 4 cut(s) 48, 53, 242, 293
NciI CCSGG 1 cut(s) 152
NdeI CATATG 1 cut(s) 116
NdeII GATC 2 cut(s) 7, 162
NmuCI GTSAC 1 cut(s) 127
NsiI ATGCAT 1 cut(s) 298
PfeI GAWTC 1 cut(s) 211
PflFI GACNNNGTC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 274
Psp5II RGGWCCY 1 cut(s) 274
PspPI GGNCC 2 cut(s) 224, 274
PspPPI RGGWCCY 1 cut(s) 274
PsuI RGATCY 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 20
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 2 cut(s) 7, 162
Sau96I GGNCC 2 cut(s) 224, 274
ScrFI CCNGG 1 cut(s) 152
SetI ASST 6 cut(s) 21, 49, 137, 221, 238, 279
SinI GGWCC 1 cut(s) 274
Sse9I AATT 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 99, 264
TaiI ACGT 1 cut(s) 21
TasI AATT 1 cut(s) 27
TatI WGTACW 1 cut(s) 259
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 127
TspRI CASTG 1 cut(s) 115
Tth111I GACNNNGTC 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 274
XagI CCTNNNNNAGG 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.