Rh1AG337700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0012669
Physical Location & Seq
Forward (+)
57148538 .. 57148864
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG337700.1

Sequence Viewer

Length: 327 bp
ATGCAGTGGATGCAGCGTCCGGTGCAGGGCCTAGTCATGAACAGTTACATGCTTCCATTCCAAAGGGATCAGGATGTTGGGATGACGACTTTGATAAAAGTCGGTCCTCATCGGTATGCACTCGTGTGGTCTGGCGAGTGCACCGTTGAGGACTTTCAATTAGAAATTCATTGGTGTAAGTTTGATCTTCGACTACATCACGGAGTCATTGAAGGAAAAACTGTATTGGATGATTACTTCTCAGCTGTAAGAGTGGCACATGGGATTTGTAGGTTTGAAGATGTTGGATTTGACACAACCTTGCTTAACATCACCTCTGATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.5

Weight (kDa)

5.36

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 75
AcsI RAATTY 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 3 cut(s) 158, 212, 278
AleI CACNNNNGTG 1 cut(s) 124
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw21I GWGCWC 1 cut(s) 143
Alw44I GTGCAC 1 cut(s) 139
AlwI GGATC 1 cut(s) 75
AoxI GGCC 1 cut(s) 28
ApaLI GTGCAC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 165
AspS9I GGNCC 2 cut(s) 28, 104
AsuHPI GGTGA 1 cut(s) 304
AvaII GGWCC 1 cut(s) 104
BaeGI GKGCMC 1 cut(s) 143
BauI CACGAG 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 25
BfaI CTAG 1 cut(s) 32
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 2 cut(s) 28, 104
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 26
BseGI GGATG 4 cut(s) 15, 79, 87, 235
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 255
BseSI GKGCMC 1 cut(s) 143
BseXI GCAGC 1 cut(s) 25
BsgI GTGCAG 1 cut(s) 44
BshFI GGCC 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 26
BsnI GGCC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 67, 184
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 254
BspHI TCATGA 1 cut(s) 36
BspPI GGATC 1 cut(s) 75
BssMI GATC 2 cut(s) 67, 184
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
Bst4CI ACNGT 3 cut(s) 44, 145, 223
BstAPI GCANNNNNTGC 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 241
BstF5I GGATG 4 cut(s) 15, 79, 87, 235
BstKTI GATC 2 cut(s) 70, 187
BstMBI GATC 2 cut(s) 67, 184
BstMWI GCNNNNNNNGC 2 cut(s) 10, 22
BstNSI RCATGY 1 cut(s) 52
BstSLI GKGCMC 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 25
BsuRI GGCC 1 cut(s) 30
BtsCI GGATG 4 cut(s) 15, 79, 87, 235
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 11
CciI TCATGA 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 28, 104
CseI GACGC 1 cut(s) 5
CviAII CATG 3 cut(s) 37, 49, 260
CviJI RGCY 2 cut(s) 30, 245
CviKI_1 RGCY 2 cut(s) 30, 245
DdeI CTNAG 1 cut(s) 241
DpnI GATC 2 cut(s) 69, 186
DpnII GATC 2 cut(s) 67, 184
Eco47I GGWCC 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 28
FaeI CATG 3 cut(s) 40, 52, 263
FaiI YATR 4 cut(s) 38, 50, 117, 261
FatI CATG 3 cut(s) 36, 48, 259
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 4 cut(s) 22, 86, 94, 242
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 1 cut(s) 32
GluI GCNGC 1 cut(s) 14
HaeIII GGCC 1 cut(s) 30
HapII CCGG 1 cut(s) 20
HgaI GACGC 1 cut(s) 5
Hin1II CATG 3 cut(s) 40, 52, 263
HinfI GANTC 1 cut(s) 204
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 2 cut(s) 37, 71
Hpy8I GTNNAC 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 3 cut(s) 44, 145, 223
HpyCH4V TGCA 5 cut(s) 4, 13, 25, 119, 141
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 22
HpyF3I CTNAG 1 cut(s) 241
Hsp92II CATG 3 cut(s) 40, 52, 263
Kzo9I GATC 2 cut(s) 67, 184
LpnPI CCDG 4 cut(s) 11, 33, 56, 117
Lsp1109I GCAGC 1 cut(s) 25
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 44
MalI GATC 2 cut(s) 69, 186
MboI GATC 2 cut(s) 67, 184
MboII GAAGA 2 cut(s) 179, 290
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 2 cut(s) 158, 165
MlyI GAGTC 1 cut(s) 213
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 3 cut(s) 117, 142, 325
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 2 cut(s) 114, 124
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 10, 22
NdeII GATC 2 cut(s) 67, 184
NlaIII CATG 3 cut(s) 40, 52, 263
NspI RCATGY 1 cut(s) 52
OliI CACNNNNGTG 1 cut(s) 124
PagI TCATGA 1 cut(s) 36
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PspPI GGNCC 2 cut(s) 28, 104
PvuII CAGCTG 1 cut(s) 245
RseI CAYNNNNRTG 2 cut(s) 114, 124
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 2 cut(s) 67, 184
Sau96I GGNCC 2 cut(s) 28, 104
SchI GAGTC 1 cut(s) 213
SduI GDGCHC 1 cut(s) 143
SetI ASST 4 cut(s) 247, 275, 302, 317
SinI GGWCC 1 cut(s) 104
SmiMI CAYNNNNRTG 2 cut(s) 114, 124
Sse9I AATT 2 cut(s) 158, 165
SspMI CTAG 1 cut(s) 32
TaaI ACNGT 3 cut(s) 44, 145, 223
TaqI TCGA 1 cut(s) 190
TaqII GACCGA 1 cut(s) 92
TasI AATT 2 cut(s) 158, 165
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 53, 158
TspGWI ACGGA 1 cut(s) 216
VneI GTGCAC 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 104
XapI RAATTY 1 cut(s) 165
XceI RCATGY 1 cut(s) 52
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.