Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009110

Physical Location & Seq

Genomic Coordinates Forward (+)

13372385 .. 13380976

Gene Structure 8592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00293090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGCATTATGCATTGTTCCAGGCCCCATTATGGTGTACAGTTCCATCCAGAGAGTGTTGCTACCTGCCATGGAAGGCAAATATTCAAGAATTTTAGAAAAATCACAGAGGATTATTGGCTGAGATCAAGGGCATCATTCATCAAGGCGCGAAATTTTCCTTTTAATGCACGCATGCAGATGCCCCATGTTGGTCAACTATTGAAAGACGTTCCAAAACACAGGCAACCACTAAATACTGCAGATGGTCAATTATATAAAAATGCAAATAACAGAAGTTTCTCTGGCATGGTTGATATGGTAAACCTTTTGCATCCAAGCATTACTATTAAAGATCTGAGGTTGAAATGGAAGAAATTTAAACACTTGGCCGGTCAAGTTGGTGGAGCAAGAAATATATTTTGTGAACTGTTTGGACAAGATGAAGCTGAAAACACCTTTTGGTTAGACAGTTCATCAATAGAGAAGAGAAGAGCACGCTTTTCATTTATGGGAGGAAAAGGTGGAGCCCTTTGGAAGCAAGTGACCTTTAAATTGTCTGATAAAAGTGATATGGCTTTGAAGGGCAGTGGTCTTCTATCTGTTCAGGATGCTCAAGGCTCTATCAAATGTTCATTTTTGGAAGAAGGTTTTCTTGATTTTCTGAAAAAGGAGCTCCTGTCATTTTGTTATGATGAAAAGGATTATGAAGAACTTCCATTTGATTTTCATGGTGGATATATTGGTTACCTCGGGTATGCGGTTAAGTTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008153 GO:0008483 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009108 GO:0009110 GO:0009396 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0018130 GO:0019438 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0042398 GO:0042537 GO:0042558 GO:0042559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0046482 GO:0046483 GO:0046653 GO:0046654 GO:0046655 GO:0046656 GO:0046820 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind GATase

Protein Analysis

251

Amino Acids

28.83

Weight (kDa)

9.35

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	1 - 32	5.8e-07	Glutamine amidotransferase class-I
Anth_synt_I_N	PF04715	143 - 247	1.9e-07	Anthranilate synthase component I, N terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28880
fragaria_vesca	FvH4_7g19690
malus_domestica	MD01G1109300.v1.1 MD07G1175300.v1.1
prunus_persica	Prupe.2G214500_v2.0.a1
pyrus_communis	pycom01g13660 pycom07g16970
rosa_chinensis	RchiOBHm_Chr1g0363521
rosa_laevigata	RLG00000027559
rosa_multiflora	Rmu_ssc0000433.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293090
rosa_rugosa	Rorug01G0308100
rosa_samantha	Rh1AG316800 Rh1BG280200 Rh1CG296300 Rh1DG311400 Rh5DG228600
rosa_wichuraiana	Rw0G000800 Rw1G028080 Rw2G022180 Rw3G029370 Rw5G038670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	74
AccII	CGCG	1 cut(s)	151
AciI	CCGC	1 cut(s)	740
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	3 cut(s)	91, 154, 356
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	32, 191
AgsI	TTSAA	4 cut(s)	88, 205, 346, 562
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	2 cut(s)	428, 655
AluI	AGCT	2 cut(s)	428, 655
Alw21I	GWGCWC	2 cut(s)	478, 657
Ama87I	CYCGRG	1 cut(s)	731
AoxI	GGCC	2 cut(s)	23, 369
ApoI	RAATTY	3 cut(s)	91, 154, 356
Asp700I	GAANNNNTTC	2 cut(s)	630, 693
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	24
AvaI	CYCGRG	1 cut(s)	731
BanII	GRGCYC	2 cut(s)	511, 657
BbsI	GAAGAC	1 cut(s)	566
Bbv12I	GWGCWC	2 cut(s)	478, 657
BccI	CCATC	2 cut(s)	54, 239
BciT130I	CCWGG	1 cut(s)	22
BfmI	CTRYAG	1 cut(s)	240
BfuAI	ACCTGC	1 cut(s)	74
BglII	AGATCT	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	731
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	26, 508
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	4 cut(s)	143, 171, 322, 580
BpiI	GAAGAC	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	579
BsaJI	CCNNGG	2 cut(s)	70, 730
BsaXI	ACNNNNNCTCC	2 cut(s)	644, 674
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 191
Bse118I	RCCGGY	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	70, 730
BseGI	GGATG	3 cut(s)	46, 313, 595
BseLI	CCNNNNNNNGG	2 cut(s)	32, 191
BseMII	CTCAG	2 cut(s)	113, 329
Bsh1236I	CGCG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	25, 371
BsiHKAI	GWGCWC	2 cut(s)	478, 657
BsiHKCI	CYCGRG	1 cut(s)	731
BsiSI	CCGG	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	32, 191
BsnI	GGCC	2 cut(s)	25, 371
BsoBI	CYCGRG	1 cut(s)	731
Bsp1286I	GDGCHC	3 cut(s)	478, 511, 657
Bsp1407I	TGTACA	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	125, 334
Bsp19I	CCATGG	1 cut(s)	70
BspACI	CCGC	1 cut(s)	740
BspANI	GGCC	2 cut(s)	25, 371
BspCNI	CTCAG	2 cut(s)	114, 330
BspFNI	CGCG	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	26, 508
BspMAI	CTGCAG	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	74
BspQI	GCTCTTC	1 cut(s)	466
BsrFI	RCCGGY	1 cut(s)	371
BsrGI	TGTACA	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	2 cut(s)	70, 730
BssMI	GATC	2 cut(s)	125, 334
BssT1I	CCWWGG	1 cut(s)	70
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	3 cut(s)	42, 411, 452
Bst6I	CTCTTC	2 cut(s)	461, 466
BstAUI	TGTACA	1 cut(s)	37
BstC8I	GCNNGC	3 cut(s)	172, 176, 478
BstDEI	CTNAG	2 cut(s)	122, 338
BstDSI	CCRYGG	1 cut(s)	70
BstEII	GGTNACC	1 cut(s)	725
BstF5I	GGATG	3 cut(s)	46, 313, 595
BstFNI	CGCG	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	2 cut(s)	128, 337
BstMBI	GATC	2 cut(s)	125, 334
BstNI	CCWGG	1 cut(s)	22
BstNSI	RCATGY	1 cut(s)	178
BstPI	GGTNACC	1 cut(s)	725
BstSCI	CCNGG	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	151
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	25, 371
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	46, 313, 595
BtsI	GCAGTG	1 cut(s)	574
BtsIMutI	CAGTG	1 cut(s)	574
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	3 cut(s)	172, 176, 478
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	5 cut(s)	71, 175, 188, 289, 710
CviJI	RGCY	8 cut(s)	25, 121, 371, 428, 509, 557, 600, 655
CviKI_1	RGCY	8 cut(s)	25, 121, 371, 428, 509, 557, 600, 655
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	2 cut(s)	122, 338
DpnI	GATC	2 cut(s)	127, 336
DpnII	GATC	2 cut(s)	125, 334
DraI	TTTAAA	2 cut(s)	361, 532
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	461, 466
EarI	CTCTTC	2 cut(s)	461, 466
Ecl136II	GAGCTC	1 cut(s)	655
Eco130I	CCWWGG	1 cut(s)	70
Eco24I	GRGCYC	2 cut(s)	511, 657
Eco53kI	GAGCTC	1 cut(s)	655
Eco88I	CYCGRG	1 cut(s)	731
Eco91I	GGTNACC	1 cut(s)	725
EcoICRI	GAGCTC	1 cut(s)	655
EcoO109I	RGGNCCY	1 cut(s)	24
EcoO65I	GGTNACC	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	70
EcoT22I	ATGCAT	1 cut(s)	15
EcoT38I	GRGCYC	2 cut(s)	511, 657
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	5 cut(s)	74, 178, 191, 292, 713
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FatI	CATG	5 cut(s)	70, 174, 187, 288, 709
FokI	GGATG	3 cut(s)	33, 300, 602
FriOI	GRGCYC	2 cut(s)	511, 657
GlaI	GCGC	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	25, 371
HapII	CCGG	1 cut(s)	372
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	5 cut(s)	74, 178, 191, 292, 713
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HincII	GTYRAC	1 cut(s)	197
HindII	GTYRAC	1 cut(s)	197
HpaII	CCGG	1 cut(s)	372
Hpy166II	GTNNAC	4 cut(s)	38, 197, 304, 407
Hpy188I	TCNGA	3 cut(s)	339, 541, 645
Hpy188III	TCNNGA	4 cut(s)	50, 88, 587, 635
Hpy8I	GTNNAC	4 cut(s)	38, 197, 304, 407
HpyAV	CCTTC	3 cut(s)	69, 556, 620
HpyCH4III	ACNGT	3 cut(s)	42, 411, 452
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	6 cut(s)	13, 170, 178, 242, 266, 313
HpyF3I	CTNAG	2 cut(s)	122, 338
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	5 cut(s)	74, 178, 191, 292, 713
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	2 cut(s)	125, 334
LguI	GCTCTTC	1 cut(s)	466
LmnI	GCTCC	4 cut(s)	386, 506, 652, 660
LpnPI	CCDG	9 cut(s)	7, 34, 63, 79, 208, 270, 385, 572, 671
LweI	GCATC	4 cut(s)	143, 171, 322, 580
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	523, 725
MalI	GATC	2 cut(s)	127, 336
MboI	GATC	2 cut(s)	125, 334
MboII	GAAGA	6 cut(s)	364, 478, 483, 566, 635, 701
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	3 cut(s)	478, 511, 657
MluCI	AATT	6 cut(s)	91, 154, 251, 356, 533, 751
MnlI	CCTC	4 cut(s)	103, 333, 488, 740
Mph1103I	ATGCAT	1 cut(s)	15
MroXI	GAANNNNTTC	2 cut(s)	630, 693
MseI	TTAA	7 cut(s)	165, 330, 360, 531, 744, 750, 754
MslI	CAYNNNNRTG	2 cut(s)	33, 179
MspI	CCGG	1 cut(s)	372
MspR9I	CCNGG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	22
MvnI	CGCG	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	70
NdeII	GATC	2 cut(s)	125, 334
NlaIII	CATG	5 cut(s)	74, 178, 191, 292, 713
NlaIV	GGNNCC	2 cut(s)	26, 508
NmuCI	GTSAC	1 cut(s)	523
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	1 cut(s)	178
PacI	TTAATTAA	1 cut(s)	754
PaeI	GCATGC	1 cut(s)	178
PciSI	GCTCTTC	1 cut(s)	466
PdmI	GAANNNNTTC	2 cut(s)	630, 693
Psp124BI	GAGCTC	1 cut(s)	657
Psp6I	CCWGG	1 cut(s)	20
PspEI	GGTNACC	1 cut(s)	725
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	26, 508
PspPI	GGNCC	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
RseI	CAYNNNNRTG	2 cut(s)	33, 179
SacI	GAGCTC	1 cut(s)	657
SapI	GCTCTTC	1 cut(s)	466
SaqAI	TTAA	7 cut(s)	165, 330, 360, 531, 744, 750, 754
Sau3AI	GATC	2 cut(s)	125, 334
Sau96I	GGNCC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	3 cut(s)	478, 511, 657
SfaNI	GCATC	4 cut(s)	143, 171, 322, 580
SfcI	CTRYAG	1 cut(s)	240
SmiMI	CAYNNNNRTG	2 cut(s)	33, 179
SmlI	CTYRAG	1 cut(s)	594
SmoI	CTYRAG	1 cut(s)	594
SphI	GCATGC	1 cut(s)	178
Sse9I	AATT	6 cut(s)	91, 154, 251, 356, 533, 751
SsiI	CCGC	1 cut(s)	740
SspI	AATATT	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	657
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	3 cut(s)	42, 411, 452
TaiI	ACGT	1 cut(s)	213
TasI	AATT	6 cut(s)	91, 154, 251, 356, 533, 751
TatI	WGTACW	1 cut(s)	37
Tru1I	TTAA	7 cut(s)	165, 330, 360, 531, 744, 750, 754
Tru9I	TTAA	7 cut(s)	165, 330, 360, 531, 744, 750, 754
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	1 cut(s)	523
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	8 cut(s)	130, 438, 444, 474, 603, 690, 698, 702
TspRI	CASTG	1 cut(s)	574
XapI	RAATTY	3 cut(s)	91, 154, 356
XceI	RCATGY	1 cut(s)	178
XmnI	GAANNNNTTC	2 cut(s)	630, 693
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.