Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009110

Physical Location & Seq

Genomic Coordinates Forward (+)

25885567 .. 25893122

Gene Structure 7556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG228600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTTGAAGTTCACCTTGTGTTCATCATCTTCTGAGCTTAGATATCCTGTTGTTAAGGGGTTGCTCAGACGTACAAACAAGAATGTACTAGAGCCTGAACCGTCGGTGAAGGTTGATAATTTTGTTAAGAAGTACCTCCTGTTGTACGTGGTGCGAAATGATGATTTGACATGGAAAGATGTTTGCCATTACTTGTATGAAGAAAATGCATTTGATAACATTGTTATATCACCTGGACCTGGTTCTCCTACATGCCCAGCAGACATAGGTTATGTGCATGGTGCTAAAGTTGTCCACGCATCTGAACCAGTCCATGGACGCTTGAGTGAAATAGAGCACAATGGGTGCATACTTTTCAATGACATTCCTTCTGGCCACAACTCTGGATTCAAGGTGGTTCGGTACCATTCACTGGTCATAGATGCTGAATCACTCCCACATGAACTCATTCCTATAGCATGGACCTCTTCTGTGAATGCACTTTCTTTTATTGAGACCAAAGAATCTGATGTTGCCTCTAAATTTGCTGATGGGTCTTTTTCAAGGAAACCAAAAAATGGAAGTTATTCACCTTCCAGCCATTCTGACAAAGTACAGAGTGAAAGGGTTCTCATGGGCATTATGCATTCTTCCAGGCCCCATTATGGTGTACAGTTCCATCCAGAGAGTGTTGCTACCTGCCATGGAAGGCAAATATTCAAGAATTTTAGAAAAATCACAGAGGATTATTGGCTGAGATCAAGGGCATCATTCATCAACGCGCGAAATTTTCCTTTTAATGTGAAGCCTCCAGTGCCGCGCAGTGAACACTGCTCTTGCATCTCGCTGACTGCCTCCTCTCATTCGTGTTCGAAGCCTCAATCCAATCCCCAGATTTTCGTACCATGCTCTGAAAATCGAAAGCTCTGCAGGTTCAGTTTGCAGCTGGGAGGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008153 GO:0008483 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009108 GO:0009110 GO:0009396 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0018130 GO:0019438 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0042398 GO:0042537 GO:0042558 GO:0042559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0046482 GO:0046483 GO:0046653 GO:0046654 GO:0046655 GO:0046656 GO:0046820 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind GATase

Protein Analysis

312

Amino Acids

34.98

Weight (kDa)

8.85

Isoelectric Point (pI)

57.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	90 - 161	8.1e-06	Glutamine amidotransferase class-I
GATase	PF00117	201 - 236	1.3e-08	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28880
fragaria_vesca	FvH4_7g19690
malus_domestica	MD01G1109300.v1.1 MD07G1175300.v1.1
prunus_persica	Prupe.2G214500_v2.0.a1
pyrus_communis	pycom01g13660 pycom07g16970
rosa_chinensis	RchiOBHm_Chr1g0363521
rosa_laevigata	RLG00000027559
rosa_multiflora	Rmu_ssc0000433.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293090
rosa_rugosa	Rorug01G0308100
rosa_samantha	Rh1AG316800 Rh1BG280200 Rh1CG296300 Rh1DG311400 Rh5DG228600
rosa_wichuraiana	Rw0G000800 Rw1G028080 Rw2G022180 Rw3G029370 Rw5G038670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	686, 900
Acc65I	GGTACC	1 cut(s)	402
AccB1I	GGYRCC	1 cut(s)	402
AccB7I	CCANNNNNTGG	3 cut(s)	314, 412, 557
AccII	CGCG	3 cut(s)	761, 763, 799
AciI	CCGC	1 cut(s)	797
AcoI	YGGCCR	1 cut(s)	373
AcsI	RAATTY	3 cut(s)	521, 703, 766
AdeI	CACNNNGTG	1 cut(s)	18
AfaI	GTAC	8 cut(s)	73, 87, 134, 146, 404, 594, 651, 882
AfiI	CCNNNNNNNGG	5 cut(s)	239, 314, 412, 557, 644
AgsI	TTSAA	5 cut(s)	7, 358, 391, 543, 700
AjnI	CCWGG	3 cut(s)	232, 238, 632
AluBI	AGCT	3 cut(s)	37, 904, 925
AluI	AGCT	3 cut(s)	37, 904, 925
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	488
AoxI	GGCC	2 cut(s)	373, 635
ApeKI	GCWGC	1 cut(s)	922
ApoI	RAATTY	3 cut(s)	521, 703, 766
Asp700I	GAANNNNTTC	3 cut(s)	447, 565, 606
Asp718I	GGTACC	1 cut(s)	402
AspLEI	GCGC	2 cut(s)	763, 801
AspS9I	GGNCC	3 cut(s)	236, 462, 636
AsuHPI	GGTGA	4 cut(s)	4, 118, 222, 561
AsuII	TTCGAA	1 cut(s)	851
AvaII	GGWCC	2 cut(s)	236, 462
BalI	TGGCCA	1 cut(s)	375
BanI	GGYRCC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	934
BccI	CCATC	2 cut(s)	524, 666
BcgI	CGANNNNNNTGC	2 cut(s)	888, 922
BciT130I	CCWGG	3 cut(s)	234, 240, 634
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	2 cut(s)	453, 907
BfuAI	ACCTGC	2 cut(s)	686, 900
BisI	GCNGC	2 cut(s)	797, 923
BlsI	GCNGC	2 cut(s)	798, 924
Bme1390I	CCNGG	3 cut(s)	234, 240, 634
Bme18I	GGWCC	2 cut(s)	236, 462
BmgT120I	GGNCC	3 cut(s)	236, 462, 636
BmiI	GGNNCC	2 cut(s)	404, 638
BmrFI	CCNGG	3 cut(s)	234, 240, 634
BmsI	GCATC	4 cut(s)	308, 412, 755, 828
BpmI	CTGGAG	1 cut(s)	774
Bpu14I	TTCGAA	1 cut(s)	851
BpuEI	CTTGAG	1 cut(s)	343
BsaAI	YACGTR	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	488
BsaJI	CCNNGG	2 cut(s)	313, 682
Bsc4I	CCNNNNNNNGG	5 cut(s)	239, 314, 412, 557, 644
Bse1I	ACTGG	3 cut(s)	308, 417, 791
BseBI	CCWGG	3 cut(s)	234, 240, 634
BseDI	CCNNGG	2 cut(s)	313, 682
BseGI	GGATG	1 cut(s)	658
BseLI	CCNNNNNNNGG	5 cut(s)	239, 314, 412, 557, 644
BseMII	CTCAG	3 cut(s)	24, 79, 725
BseNI	ACTGG	3 cut(s)	308, 417, 791
BseRI	GAGGAG	1 cut(s)	826
BseXI	GCAGC	1 cut(s)	934
BseYI	CCCAGC	2 cut(s)	256, 925
Bsh1236I	CGCG	3 cut(s)	761, 763, 799
BshFI	GGCC	2 cut(s)	375, 637
BshNI	GGYRCC	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	339
BslI	CCNNNNNNNGG	5 cut(s)	239, 314, 412, 557, 644
BsmAI	GTCTC	1 cut(s)	488
BsmI	GAATGC	2 cut(s)	481, 625
BsnI	GGCC	2 cut(s)	375, 637
Bso31I	GGTCTC	1 cut(s)	488
Bsp119I	TTCGAA	1 cut(s)	851
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp1407I	TGTACA	1 cut(s)	649
Bsp143I	GATC	2 cut(s)	737, 933
Bsp19I	CCATGG	2 cut(s)	313, 682
BspACI	CCGC	1 cut(s)	797
BspANI	GGCC	2 cut(s)	375, 637
BspCNI	CTCAG	3 cut(s)	25, 78, 726
BspFNI	CGCG	3 cut(s)	761, 763, 799
BspLI	GGNNCC	2 cut(s)	404, 638
BspMAI	CTGCAG	1 cut(s)	911
BspMI	ACCTGC	2 cut(s)	686, 900
BspT104I	TTCGAA	1 cut(s)	851
BspT107I	GGYRCC	1 cut(s)	402
BspTNI	GGTCTC	1 cut(s)	488
BsrGI	TGTACA	1 cut(s)	649
BsrI	ACTGG	3 cut(s)	308, 417, 791
BssECI	CCNNGG	2 cut(s)	313, 682
BssMI	GATC	2 cut(s)	737, 933
BssT1I	CCWWGG	2 cut(s)	313, 682
Bst2UI	CCWGG	3 cut(s)	234, 240, 634
Bst4CI	ACNGT	2 cut(s)	102, 654
Bst6I	CTCTTC	1 cut(s)	472
BstAUI	TGTACA	1 cut(s)	649
BstBAI	YACGTR	1 cut(s)	148
BstBI	TTCGAA	1 cut(s)	851
BstDEI	CTNAG	4 cut(s)	33, 38, 65, 734
BstDSI	CCRYGG	2 cut(s)	313, 682
BstF5I	GGATG	1 cut(s)	658
BstFNI	CGCG	3 cut(s)	761, 763, 799
BstHHI	GCGC	2 cut(s)	763, 801
BstKTI	GATC	2 cut(s)	740, 936
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	2 cut(s)	737, 933
BstMWI	GCNNNNNNNGC	1 cut(s)	793
BstNI	CCWGG	3 cut(s)	234, 240, 634
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	3 cut(s)	232, 238, 632
BstSFI	CTRYAG	2 cut(s)	453, 907
BstUI	CGCG	3 cut(s)	761, 763, 799
BstV1I	GCAGC	1 cut(s)	934
BstX2I	RGATCY	1 cut(s)	933
BstXI	CCANNNNNNTGG	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	933
BsuRI	GGCC	2 cut(s)	375, 637
BtgI	CCRYGG	2 cut(s)	313, 682
BtsCI	GGATG	1 cut(s)	658
BtsI	GCAGTG	2 cut(s)	808, 808
BtsIMutI	CAGTG	4 cut(s)	410, 798, 808, 808
BveI	ACCTGC	2 cut(s)	686, 900
CfoI	GCGC	2 cut(s)	763, 801
Cfr13I	GGNCC	3 cut(s)	236, 462, 636
CseI	GACGC	1 cut(s)	327
CsiI	ACCWGGT	1 cut(s)	238
Csp6I	GTAC	8 cut(s)	72, 86, 133, 145, 403, 593, 650, 881
CviAII	CATG	9 cut(s)	171, 252, 278, 314, 440, 459, 613, 683, 885
CviQI	GTAC	8 cut(s)	72, 86, 133, 145, 403, 593, 650, 881
DdeI	CTNAG	4 cut(s)	33, 38, 65, 734
DpnI	GATC	2 cut(s)	739, 935
DpnII	GATC	2 cut(s)	737, 933
DraIII	CACNNNGTG	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	472
EarI	CTCTTC	1 cut(s)	472
Eco130I	CCWWGG	2 cut(s)	313, 682
Eco31I	GGTCTC	1 cut(s)	488
Eco32I	GATATC	1 cut(s)	44
Eco47I	GGWCC	2 cut(s)	236, 462
EcoO109I	RGGNCCY	1 cut(s)	636
EcoRII	CCWGG	3 cut(s)	232, 238, 632
EcoRV	GATATC	1 cut(s)	44
EcoT14I	CCWWGG	2 cut(s)	313, 682
EcoT22I	ATGCAT	2 cut(s)	211, 627
ErhI	CCWWGG	2 cut(s)	313, 682
FaeI	CATG	9 cut(s)	174, 255, 281, 317, 443, 462, 616, 686, 888
FalI	AAGNNNNNCTT	1 cut(s)	31
FatI	CATG	9 cut(s)	170, 251, 277, 313, 439, 458, 612, 682, 884
Fnu4HI	GCNGC	2 cut(s)	797, 923
FokI	GGATG	1 cut(s)	645
Fsp4HI	GCNGC	2 cut(s)	797, 923
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	2 cut(s)	762, 800
GluI	GCNGC	2 cut(s)	797, 923
GsaI	CCCAGC	2 cut(s)	260, 929
GsuI	CTGGAG	1 cut(s)	774
HaeIII	GGCC	2 cut(s)	375, 637
HgaI	GACGC	1 cut(s)	327
HhaI	GCGC	2 cut(s)	763, 801
Hin1II	CATG	9 cut(s)	174, 255, 281, 317, 443, 462, 616, 686, 888
Hin6I	GCGC	2 cut(s)	761, 799
HinP1I	GCGC	2 cut(s)	761, 799
HinfI	GANTC	3 cut(s)	387, 428, 503
HphI	GGTGA	4 cut(s)	4, 118, 222, 561
Hpy166II	GTNNAC	4 cut(s)	12, 295, 650, 806
Hpy188I	TCNGA	7 cut(s)	34, 68, 304, 508, 586, 892, 938
Hpy188III	TCNNGA	3 cut(s)	384, 662, 700
Hpy8I	GTNNAC	4 cut(s)	12, 295, 650, 806
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	4 cut(s)	103, 378, 582, 681
HpyCH4III	ACNGT	2 cut(s)	102, 654
HpyCH4IV	ACGT	2 cut(s)	70, 147
HpyCH4V	TGCA	8 cut(s)	209, 277, 348, 479, 625, 819, 909, 922
HpyF10VI	GCNNNNNNNGC	1 cut(s)	793
HpyF3I	CTNAG	4 cut(s)	33, 38, 65, 734
HpySE526I	ACGT	2 cut(s)	70, 147
Hsp92II	CATG	9 cut(s)	174, 255, 281, 317, 443, 462, 616, 686, 888
HspAI	GCGC	2 cut(s)	761, 799
KpnI	GGTACC	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	737, 933
Lsp1109I	GCAGC	1 cut(s)	934
LweI	GCATC	4 cut(s)	308, 412, 755, 828
MabI	ACCWGGT	1 cut(s)	238
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	2 cut(s)	70, 147
MalI	GATC	2 cut(s)	739, 935
MboI	GATC	2 cut(s)	737, 933
MboII	GAAGA	4 cut(s)	21, 212, 459, 621
MflI	RGATCY	1 cut(s)	933
MhlI	GDGCHC	1 cut(s)	339
MlsI	TGGCCA	1 cut(s)	375
MluCI	AATT	4 cut(s)	118, 521, 703, 766
MluNI	TGGCCA	1 cut(s)	375
MnlI	CCTC	9 cut(s)	146, 475, 526, 715, 798, 844, 847, 867, 923
Mox20I	TGGCCA	1 cut(s)	375
Mph1103I	ATGCAT	2 cut(s)	211, 627
MroXI	GAANNNNTTC	3 cut(s)	447, 565, 606
MscI	TGGCCA	1 cut(s)	375
MseI	TTAA	3 cut(s)	54, 126, 777
MslI	CAYNNNNRTG	1 cut(s)	645
Msp20I	TGGCCA	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	925
MspR9I	CCNGG	3 cut(s)	234, 240, 634
Mva1269I	GAATGC	2 cut(s)	481, 625
MvaI	CCWGG	3 cut(s)	234, 240, 634
MvnI	CGCG	3 cut(s)	761, 763, 799
MwoI	GCNNNNNNNGC	1 cut(s)	793
NcoI	CCATGG	2 cut(s)	313, 682
NdeII	GATC	2 cut(s)	737, 933
NlaIII	CATG	9 cut(s)	174, 255, 281, 317, 443, 462, 616, 686, 888
NlaIV	GGNNCC	2 cut(s)	404, 638
NsiI	ATGCAT	2 cut(s)	211, 627
NspI	RCATGY	1 cut(s)	255
NspV	TTCGAA	1 cut(s)	851
PctI	GAATGC	2 cut(s)	481, 625
PdmI	GAANNNNTTC	3 cut(s)	447, 565, 606
PfeI	GAWTC	3 cut(s)	387, 428, 503
PflMI	CCANNNNNTGG	3 cut(s)	314, 412, 557
PkrI	GCNGC	2 cut(s)	798, 924
Ppu21I	YACGTR	1 cut(s)	148
Psp6I	CCWGG	3 cut(s)	232, 238, 632
PspFI	CCCAGC	2 cut(s)	256, 925
PspGI	CCWGG	3 cut(s)	232, 238, 632
PspN4I	GGNNCC	2 cut(s)	404, 638
PspPI	GGNCC	3 cut(s)	236, 462, 636
PstI	CTGCAG	1 cut(s)	911
PsuI	RGATCY	1 cut(s)	933
PvuII	CAGCTG	1 cut(s)	925
RsaI	GTAC	8 cut(s)	73, 87, 134, 146, 404, 594, 651, 882
RsaNI	GTAC	8 cut(s)	72, 86, 133, 145, 403, 593, 650, 881
RseI	CAYNNNNRTG	1 cut(s)	645
SaqAI	TTAA	3 cut(s)	54, 126, 777
SatI	GCNGC	2 cut(s)	797, 923
Sau3AI	GATC	2 cut(s)	737, 933
Sau96I	GGNCC	3 cut(s)	236, 462, 636
ScrFI	CCNGG	3 cut(s)	234, 240, 634
SduI	GDGCHC	1 cut(s)	339
SexAI	ACCWGGT	1 cut(s)	238
SfaNI	GCATC	4 cut(s)	308, 412, 755, 828
SfcI	CTRYAG	2 cut(s)	453, 907
SfuI	TTCGAA	1 cut(s)	851
SinI	GGWCC	2 cut(s)	236, 462
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	4 cut(s)	118, 521, 703, 766
SsiI	CCGC	1 cut(s)	797
SspI	AATATT	1 cut(s)	696
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	3 cut(s)	232, 238, 632
StyI	CCWWGG	2 cut(s)	313, 682
TaaI	ACNGT	2 cut(s)	102, 654
TaiI	ACGT	2 cut(s)	73, 150
TaqI	TCGA	2 cut(s)	851, 898
TasI	AATT	4 cut(s)	118, 521, 703, 766
TatI	WGTACW	3 cut(s)	85, 592, 649
TauI	GCSGC	1 cut(s)	799
TfiI	GAWTC	3 cut(s)	387, 428, 503
Tru1I	TTAA	3 cut(s)	54, 126, 777
Tru9I	TTAA	3 cut(s)	54, 126, 777
TscAI	CASTG	4 cut(s)	417, 798, 808, 815
TseI	GCWGC	1 cut(s)	922
TspDTI	ATGAA	4 cut(s)	12, 213, 456, 742
TspRI	CASTG	4 cut(s)	417, 798, 808, 815
Van91I	CCANNNNNTGG	3 cut(s)	314, 412, 557
VpaK11BI	GGWCC	2 cut(s)	236, 462
XapI	RAATTY	3 cut(s)	521, 703, 766
XceI	RCATGY	1 cut(s)	255
XmnI	GAANNNNTTC	3 cut(s)	447, 565, 606
XspI	CTAG	1 cut(s)	89
Zsp2I	ATGCAT	2 cut(s)	211, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.