Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Forward (+)

42501023 .. 42505656

Gene Structure 4634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0308100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2169 bp

ATGAATCTAAAGGGGACCAAGTTTGTAAGGTTTGATGATTGGCATTCAGAGAGATCTTCAAGTTCTGAGAGGGAATTTTCGACTGATGATGGACGAAATCCAAGAAGAGCTAGACCATCTGTGAATGCAGTATTGAGTAGTATTTGGAGAGGATTCGATAGGGGTTCAGATAGGTTTAAAAGCTTCAAAAAACCATTAAGTCCCACTTCTGTAGGTAAGCAGCCAGCAAAGGAGTCAGGCCCTTGGAAGAACATTCTCGACCCTCAGGGATCAGTTCTTCAGAGTTGGAATAAGATATTTGTGATATCCTGTGTCATAGCTGTGTCATTGGACCCATTGTTTCTTTATACTTTAGTGGTTGATGGCAATAATAAATGCCTTGGTTTGGACAGAAGGCTGCAGATCATTGCTTGCGTTCTTCGTTCATTCACCGATGTTTTCCATATACTTCATATTATTTTTCAGTTCCGCACTGGGTTTATTGCCCCATCTTCTAGAGTATTCGGAAGGGGTGAGCTAAATGATGACCCTGTGGCCATTGCAAAAAGATATTTGTTTTCATACTTCATTATAGATGTTCTAGCTATTCTTCCTCTGCCACAGGTTGTAGTTTTTTTCGTAGTCCCTATGATAGAACGCCCAGTTCCAATGGCCGCAAAGAACTTATTGACAATTGTGATCGTTTGCCAATATGTGCCAAGACTTATACGAATCTGTCCACTATACAAAGAAGTTACAGCAACTTCTGGCTTCCTGACTGAAACAGCGTGGGCGGCAGCTGCATTCAATCTTTTGCTCTACATGTTAGCCAGCCATTTAGTTGGAGCATTATGGTACTTGTTCTCCGTAGAACGAGAGTATTGGTGCTGGCGTGATCATTGTGGAAATGATGTACATTGTAAGCGGTACCTGTACTGTGGCCATGGCAGGGAAACTAACACGACAATTGTTAACATGTTAAAAGATTCTTGCCGTCTTACCAACCCTGAGGACATTACAAATTCATCTGTGTTCAACTTTGGAATATTTTTCGAGGCTCTGGAGTCTGGTGTGATGGAGACGACAGATTTTCCAAAGAAATTTTTCTACTGCTTCTGGTGGGGTCTGCGCAGCCTTAGTTCTCTAGGTCAAAACCTCAAAACAAGCACTTTTGTTTGGGAGATACTCTTTGCAGTCTTCATTTCTATCTTCGGACTGGTGCTATTTTCATTGCTTATTGGAAATATGCAGAAATTTCTGCAGTCAACTACTCTGAGAGTTGAAGAAATGAGAGTGAAAAGGCGAGATGCAGAACAGTGGATGTCCCACCGAATGCTCCCTGAGAAACTGAAGGAAAGGATCAGACGCTATGATCAGTATAAATGGCAAGAAACAAGAGGTGTTGAGGAAGATACTCTAGTTCGTAACCTTCCTAAAGACTTGAGGAAGGACATAAAACGCCATCTTTGCTTGGCTCTTGTTAAGAGAGTGCCAATGTTCGAGAAAATGGATGACCGACTGATGGATGCCCTGTGTGATCATCTCAAGCCAGTTCTTTTCACAGACAACAGCTTCATCATCCGAGAGGGTGACCCAGTTGATGAGATGCTATTTGTTATGCGTGGAAACTTGGCAACTATGACTACTAATGGTGGAAGAACTGGCTTCTTTAACTGTGCTGATCTTAAGGCCGGTGACTTCTGTGGAGAAGAGCTTCTTACATGGGCATTGGATCCAAAATCCACTTCCAATCTTCCTAGCTCAACTCGAACAGTGGAAGCTAGAACTGAGGTTGAAGCATTTGCTCTCAGGGCTGATGATTTGAAGTTTGTCGCCTCCCAGTTTCGGCGCCTGCACAGCAGGCAGGTCCAACATGCTTTCAGGTTTTACTCCATGCAGTGGAGGACATGGGCAGCCTGTTTCATACAAGCAGCTTGGCGCCGGCACTGCAAGAGAAAGCTTGAGAAGTCATTACGTGAAGCAGAAGACAAGCTGCATGATGCTTTTGCAAGAGATGCCGGAACCTCACCAGGCCTTGTTGCCACTGTATATGCATCAAGGTTTGCAGCCAATGCACTACGCGCCTTGCGACAGAAGGGTGTGCGTGACACTAGACCTTTACCAGCATTGATGCCACTGCTACCTCAGAAGCCCACTGAGCCTGATTTTACTGCAGAACATCAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

722

Amino Acids

83.2

Weight (kDa)

9.25

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	127 - 417	1.6e-13	Ion transport protein
cNMP_binding	PF00027	513 - 604	5.2e-07	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1109
Acc36I	ACCTGC	1 cut(s)	1834
Acc65I	GGTACC	1 cut(s)	906
AccB1I	GGYRCC	3 cut(s)	906, 1827, 1917
AccB7I	CCANNNNNTGG	1 cut(s)	1878
AccII	CGCG	1 cut(s)	2061
AciI	CCGC	4 cut(s)	469, 654, 773, 904
AclWI	GGATC	4 cut(s)	277, 1346, 1706, 1719
AcoI	YGGCCR	3 cut(s)	534, 651, 919
AcsI	RAATTY	4 cut(s)	74, 1000, 1079, 1232
AcuI	CTGAAG	2 cut(s)	263, 1349
AcyI	GRCGYC	2 cut(s)	1828, 1918
AfaI	GTAC	4 cut(s)	836, 894, 908, 914
AfiI	CCNNNNNNNGG	5 cut(s)	385, 928, 1501, 1824, 1878
AflII	CTTAAG	1 cut(s)	1664
AflIII	ACRYGT	2 cut(s)	801, 954
AgsI	TTSAA	7 cut(s)	60, 187, 787, 1015, 1262, 1775, 1804
AjnI	CCWGG	1 cut(s)	2008
AjuI	GAANNNNNNNTTGG	2 cut(s)	1708, 1740
Alw26I	GTCTC	1 cut(s)	1052
AlwI	GGATC	4 cut(s)	277, 1346, 1706, 1719
AoxI	GGCC	6 cut(s)	238, 534, 651, 919, 1668, 2011
ApeKI	GCWGC	9 cut(s)	220, 397, 776, 779, 1110, 1892, 1910, 1972, 2045
ApoI	RAATTY	4 cut(s)	74, 1000, 1079, 1232
Asp700I	GAANNNNTTC	2 cut(s)	1082, 1692
Asp718I	GGTACC	1 cut(s)	906
AspLEI	GCGC	4 cut(s)	1110, 1830, 1920, 2063
AspS9I	GGNCC	4 cut(s)	15, 239, 331, 1846
AsuHPI	GGTGA	5 cut(s)	421, 524, 1580, 1685, 1998
AvaII	GGWCC	3 cut(s)	15, 331, 1846
AxyI	CCTNAGG	2 cut(s)	264, 987
BaeI	ACNNNNGTAYC	2 cut(s)	1383, 1416
BalI	TGGCCA	2 cut(s)	536, 921
BamHI	GGATCC	1 cut(s)	1711
BanI	GGYRCC	3 cut(s)	906, 1827, 1917
BbsI	GAAGAC	2 cut(s)	1168, 1971
BbvI	GCAGC	9 cut(s)	232, 384, 766, 788, 1122, 1904, 1922, 1959, 2057
BccI	CCATC	7 cut(s)	83, 124, 356, 496, 1048, 1449, 1495
BceAI	ACGGC	1 cut(s)	957
BciT130I	CCWGG	1 cut(s)	2010
BclI	TGATCA	3 cut(s)	874, 1351, 1516
BcoDI	GTCTC	1 cut(s)	1052
BfaI	CTAG	8 cut(s)	111, 495, 581, 1124, 1397, 1737, 1761, 2091
BfmI	CTRYAG	4 cut(s)	210, 398, 1238, 2151
BfoI	RGCGCY	2 cut(s)	1831, 1921
BfrI	CTTAAG	1 cut(s)	1664
BfuAI	ACCTGC	1 cut(s)	1834
BglII	AGATCT	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	2010
Bme18I	GGWCC	3 cut(s)	15, 331, 1846
BmgT120I	GGNCC	4 cut(s)	15, 239, 331, 1846
BmiI	GGNNCC	7 cut(s)	16, 333, 908, 1713, 1829, 1919, 2002
BmrFI	CCNGG	1 cut(s)	2010
BmrI	ACTGGG	4 cut(s)	483, 635, 1568, 1813
BmsI	GCATC	7 cut(s)	1276, 1495, 1575, 1969, 1984, 2042, 2100
BmuI	ACTGGG	4 cut(s)	483, 635, 1568, 1813
BpiI	GAAGAC	2 cut(s)	1168, 1971
BpmI	CTGGAG	1 cut(s)	1061
BpuEI	CTTGAG	3 cut(s)	1441, 1508, 1961
BsaAI	YACGTR	1 cut(s)	1955
BsaHI	GRCGYC	2 cut(s)	1828, 1918
BsaJI	CCNNGG	3 cut(s)	242, 379, 922
BsaXI	ACNNNNNCTCC	2 cut(s)	827, 857
Bsc4I	CCNNNNNNNGG	5 cut(s)	385, 928, 1501, 1824, 1878
Bse118I	RCCGGY	2 cut(s)	1670, 1920
Bse1I	ACTGG	7 cut(s)	478, 641, 1200, 1529, 1574, 1645, 1819
Bse21I	CCTNAGG	2 cut(s)	264, 987
Bse3DI	GCAATG	3 cut(s)	405, 537, 1208
BseBI	CCWGG	1 cut(s)	2010
BseDI	CCNNGG	3 cut(s)	242, 379, 922
BseGI	GGATG	4 cut(s)	1305, 1495, 1510, 1557
BseLI	CCNNNNNNNGG	5 cut(s)	385, 928, 1501, 1824, 1878
BseMI	GCAATG	3 cut(s)	405, 537, 1208
BseMII	CTCAG	9 cut(s)	57, 278, 978, 1244, 1311, 1758, 1801, 2127, 2138
BseNI	ACTGG	7 cut(s)	478, 641, 1200, 1529, 1574, 1645, 1819
BseXI	GCAGC	9 cut(s)	232, 384, 766, 788, 1122, 1904, 1922, 1959, 2057
BsgI	GTGCAG	1 cut(s)	1817
Bsh1236I	CGCG	1 cut(s)	2061
BshFI	GGCC	6 cut(s)	240, 536, 653, 921, 1670, 2013
BshNI	GGYRCC	3 cut(s)	906, 1827, 1917
BsiSI	CCGG	3 cut(s)	1671, 1921, 1998
BslFI	GGGAC	4 cut(s)	28, 186, 608, 1288
BslI	CCNNNNNNNGG	5 cut(s)	385, 928, 1501, 1824, 1878
BsmAI	GTCTC	1 cut(s)	1052
BsmBI	CGTCTC	1 cut(s)	1052
BsmFI	GGGAC	4 cut(s)	28, 186, 608, 1288
BsmI	GAATGC	4 cut(s)	43, 130, 782, 1317
BsnI	GGCC	6 cut(s)	240, 536, 653, 921, 1670, 2013
Bsp1407I	TGTACA	1 cut(s)	892
Bsp19I	CCATGG	1 cut(s)	922
BspACI	CCGC	4 cut(s)	469, 654, 773, 904
BspANI	GGCC	6 cut(s)	240, 536, 653, 921, 1670, 2013
BspCNI	CTCAG	9 cut(s)	58, 277, 979, 1245, 1312, 1759, 1800, 2128, 2137
BspFNI	CGCG	1 cut(s)	2061
BspLI	GGNNCC	7 cut(s)	16, 333, 908, 1713, 1829, 1919, 2002
BspMAI	CTGCAG	3 cut(s)	402, 1242, 2155
BspMI	ACCTGC	1 cut(s)	1834
BspPI	GGATC	4 cut(s)	277, 1346, 1706, 1719
BspQI	GCTCTTC	2 cut(s)	100, 1683
BspT107I	GGYRCC	3 cut(s)	906, 1827, 1917
BspTI	CTTAAG	1 cut(s)	1664
BsrDI	GCAATG	3 cut(s)	405, 537, 1208
BsrFI	RCCGGY	2 cut(s)	1670, 1920
BsrGI	TGTACA	1 cut(s)	892
BsrI	ACTGG	7 cut(s)	478, 641, 1200, 1529, 1574, 1645, 1819
BssAI	RCCGGY	2 cut(s)	1670, 1920
BssECI	CCNNGG	3 cut(s)	242, 379, 922
BssNI	GRCGYC	2 cut(s)	1828, 1918
BssT1I	CCWWGG	3 cut(s)	242, 379, 922
Bst2UI	CCWGG	1 cut(s)	2010
Bst4CI	ACNGT	5 cut(s)	917, 1296, 1655, 1753, 2026
Bst6I	CTCTTC	2 cut(s)	100, 1683
BstACI	GRCGYC	2 cut(s)	1828, 1918
BstAFI	CTTAAG	1 cut(s)	1664
BstAPI	GCANNNNNTGC	2 cut(s)	1994, 2051
BstAUI	TGTACA	1 cut(s)	892
BstBAI	YACGTR	1 cut(s)	1955
BstC8I	GCNNGC	7 cut(s)	225, 412, 811, 869, 1832, 1841, 1922
BstDSI	CCRYGG	1 cut(s)	922
BstEII	GGTNACC	1 cut(s)	1568
BstF5I	GGATG	4 cut(s)	1305, 1495, 1510, 1557
BstFNI	CGCG	1 cut(s)	2061
BstH2I	RGCGCY	2 cut(s)	1831, 1921
BstHHI	GCGC	4 cut(s)	1110, 1830, 1920, 2063
BstMAI	GTCTC	1 cut(s)	1052
BstNI	CCWGG	1 cut(s)	2010
BstNSI	RCATGY	3 cut(s)	805, 958, 1856
BstPI	GGTNACC	1 cut(s)	1568
BstSCI	CCNGG	1 cut(s)	2008
BstSFI	CTRYAG	4 cut(s)	210, 398, 1238, 2151
BstUI	CGCG	1 cut(s)	2061
BstV1I	GCAGC	9 cut(s)	232, 384, 766, 788, 1122, 1904, 1922, 1959, 2057
BstV2I	GAAGAC	2 cut(s)	1168, 1971
BstX2I	RGATCY	2 cut(s)	53, 1711
BstXI	CCANNNNNNTGG	1 cut(s)	821
BstYI	RGATCY	2 cut(s)	53, 1711
Bsu36I	CCTNAGG	2 cut(s)	264, 987
BsuRI	GGCC	6 cut(s)	240, 536, 653, 921, 1670, 2013
BtgI	CCRYGG	1 cut(s)	922
BtsCI	GGATG	4 cut(s)	1305, 1495, 1510, 1557
BtsI	GCAGTG	3 cut(s)	1883, 1924, 2114
BtsIMutI	CAGTG	8 cut(s)	471, 1301, 1758, 1883, 1924, 2022, 2114, 2133
BveI	ACCTGC	1 cut(s)	1834
Cac8I	GCNNGC	7 cut(s)	225, 412, 811, 869, 1832, 1841, 1922
CfoI	GCGC	4 cut(s)	1110, 1830, 1920, 2063
Cfr10I	RCCGGY	2 cut(s)	1670, 1920
Cfr13I	GGNCC	4 cut(s)	15, 239, 331, 1846
CseI	GACGC	1 cut(s)	1353
Csp6I	GTAC	4 cut(s)	835, 893, 907, 913
CviAII	CATG	8 cut(s)	802, 923, 955, 1701, 1853, 1873, 1887, 1976
CviQI	GTAC	4 cut(s)	835, 893, 907, 913
DinI	GGCGCC	2 cut(s)	1829, 1919
DraI	TTTAAA	1 cut(s)	178
EaeI	YGGCCR	3 cut(s)	534, 651, 919
Eam1104I	CTCTTC	2 cut(s)	100, 1683
EarI	CTCTTC	2 cut(s)	100, 1683
Eco130I	CCWWGG	3 cut(s)	242, 379, 922
Eco147I	AGGCCT	1 cut(s)	2013
Eco32I	GATATC	1 cut(s)	306
Eco47I	GGWCC	3 cut(s)	15, 331, 1846
Eco57I	CTGAAG	2 cut(s)	263, 1349
Eco81I	CCTNAGG	2 cut(s)	264, 987
Eco91I	GGTNACC	1 cut(s)	1568
EcoO109I	RGGNCCY	1 cut(s)	239
EcoO65I	GGTNACC	1 cut(s)	1568
EcoRII	CCWGG	1 cut(s)	2008
EcoRV	GATATC	1 cut(s)	306
EcoT14I	CCWWGG	3 cut(s)	242, 379, 922
EcoT22I	ATGCAT	1 cut(s)	2035
EgeI	GGCGCC	2 cut(s)	1829, 1919
EheI	GGCGCC	2 cut(s)	1829, 1919
ErhI	CCWWGG	3 cut(s)	242, 379, 922
Esp3I	CGTCTC	1 cut(s)	1052
FaeI	CATG	8 cut(s)	805, 926, 958, 1704, 1856, 1876, 1890, 1979
FalI	AAGNNNNNCTT	4 cut(s)	190, 222, 1680, 1712
FaqI	GGGAC	4 cut(s)	28, 186, 608, 1288
FatI	CATG	8 cut(s)	801, 922, 954, 1700, 1852, 1872, 1886, 1975
FbaI	TGATCA	3 cut(s)	874, 1351, 1516
FokI	GGATG	4 cut(s)	1312, 1502, 1517, 1544
FspBI	CTAG	8 cut(s)	111, 495, 581, 1124, 1397, 1737, 1761, 2091
FspI	TGCGCA	1 cut(s)	1109
GlaI	GCGC	4 cut(s)	1109, 1829, 1919, 2062
GsuI	CTGGAG	1 cut(s)	1061
HaeII	RGCGCY	2 cut(s)	1831, 1921
HaeIII	GGCC	6 cut(s)	240, 536, 653, 921, 1670, 2013
HapII	CCGG	3 cut(s)	1671, 1921, 1998
HgaI	GACGC	1 cut(s)	1353
HhaI	GCGC	4 cut(s)	1110, 1830, 1920, 2063
Hin1I	GRCGYC	2 cut(s)	1828, 1918
Hin1II	CATG	8 cut(s)	805, 926, 958, 1704, 1856, 1876, 1890, 1979
Hin6I	GCGC	4 cut(s)	1108, 1828, 1918, 2061
HinP1I	GCGC	4 cut(s)	1108, 1828, 1918, 2061
HincII	GTYRAC	2 cut(s)	952, 1245
HindII	GTYRAC	2 cut(s)	952, 1245
HindIII	AAGCTT	2 cut(s)	181, 1937
HinfI	GANTC	6 cut(s)	4, 153, 233, 711, 965, 1043
HpaI	GTTAAC	1 cut(s)	952
HpaII	CCGG	3 cut(s)	1671, 1921, 1998
HphI	GGTGA	5 cut(s)	421, 524, 1580, 1685, 1998
Hpy166II	GTNNAC	3 cut(s)	719, 952, 1245
Hpy188III	TCNNGA	6 cut(s)	257, 495, 754, 1040, 1480, 2162
Hpy8I	GTNNAC	3 cut(s)	719, 952, 1245
HpyAV	CCTTC	6 cut(s)	387, 501, 1324, 1418, 1420, 2068
HpyCH4III	ACNGT	5 cut(s)	917, 1296, 1655, 1753, 2026
HpyCH4IV	ACGT	1 cut(s)	1954
HpySE526I	ACGT	1 cut(s)	1954
Hsp92I	GRCGYC	2 cut(s)	1828, 1918
Hsp92II	CATG	8 cut(s)	805, 926, 958, 1704, 1856, 1876, 1890, 1979
HspAI	GCGC	4 cut(s)	1108, 1828, 1918, 2061
KasI	GGCGCC	2 cut(s)	1827, 1917
KpnI	GGTACC	1 cut(s)	910
KroI	GCCGGC	1 cut(s)	1920
KroNI	GCCGGC	1 cut(s)	1922
Ksp22I	TGATCA	3 cut(s)	874, 1351, 1516
KspAI	GTTAAC	1 cut(s)	952
LguI	GCTCTTC	2 cut(s)	100, 1683
LmnI	GCTCC	2 cut(s)	824, 1320
Lsp1109I	GCAGC	9 cut(s)	232, 384, 766, 788, 1122, 1904, 1922, 1959, 2057
LweI	GCATC	7 cut(s)	1276, 1495, 1575, 1969, 1984, 2042, 2100
MaeI	CTAG	8 cut(s)	111, 495, 581, 1124, 1397, 1737, 1761, 2091
MaeII	ACGT	1 cut(s)	1954
MaeIII	GTNAC	5 cut(s)	733, 1403, 1568, 1673, 2084
MfeI	CAATTG	2 cut(s)	672, 945
MflI	RGATCY	2 cut(s)	53, 1711
MlsI	TGGCCA	2 cut(s)	536, 921
MluCI	AATT	6 cut(s)	74, 672, 945, 1000, 1079, 1232
MluNI	TGGCCA	2 cut(s)	536, 921
Mly113I	GGCGCC	2 cut(s)	1828, 1918
MlyI	GAGTC	2 cut(s)	242, 1052
MmeI	TCCRAC	3 cut(s)	266, 802, 1873
Mox20I	TGGCCA	2 cut(s)	536, 921
Mph1103I	ATGCAT	1 cut(s)	2035
MroNI	GCCGGC	1 cut(s)	1920
MroXI	GAANNNNTTC	2 cut(s)	1082, 1692
MscI	TGGCCA	2 cut(s)	536, 921
MseI	TTAA	7 cut(s)	177, 197, 951, 959, 1461, 1650, 1665
MslI	CAYNNNNRTG	1 cut(s)	320
Msp20I	TGGCCA	2 cut(s)	536, 921
MspA1I	CMGCKG	1 cut(s)	779
MspCI	CTTAAG	1 cut(s)	1664
MspI	CCGG	3 cut(s)	1671, 1921, 1998
MspR9I	CCNGG	1 cut(s)	2010
MunI	CAATTG	2 cut(s)	672, 945
Mva1269I	GAATGC	4 cut(s)	43, 130, 782, 1317
MvaI	CCWGG	1 cut(s)	2010
MvnI	CGCG	1 cut(s)	2061
NaeI	GCCGGC	1 cut(s)	1922
NarI	GGCGCC	2 cut(s)	1828, 1918
NcoI	CCATGG	1 cut(s)	922
NgoMIV	GCCGGC	1 cut(s)	1920
NlaIII	CATG	8 cut(s)	805, 926, 958, 1704, 1856, 1876, 1890, 1979
NlaIV	GGNNCC	7 cut(s)	16, 333, 908, 1713, 1829, 1919, 2002
NmuCI	GTSAC	3 cut(s)	1568, 1673, 2084
NsbI	TGCGCA	1 cut(s)	1109
NsiI	ATGCAT	1 cut(s)	2035
NspI	RCATGY	3 cut(s)	805, 958, 1856
PceI	AGGCCT	1 cut(s)	2013
PciI	ACATGT	2 cut(s)	801, 954
PciSI	GCTCTTC	2 cut(s)	100, 1683
PcsI	WCGNNNNNNNCGW	1 cut(s)	2065
PctI	GAATGC	4 cut(s)	43, 130, 782, 1317
PdiI	GCCGGC	1 cut(s)	1922
PdmI	GAANNNNTTC	2 cut(s)	1082, 1692
PfeI	GAWTC	4 cut(s)	4, 153, 711, 965
PflMI	CCANNNNNTGG	1 cut(s)	1878
PleI	GAGTC	2 cut(s)	241, 1051
PluTI	GGCGCC	2 cut(s)	1831, 1921
PpsI	GAGTC	2 cut(s)	241, 1051
Ppu21I	YACGTR	1 cut(s)	1955
PscI	ACATGT	2 cut(s)	801, 954
Psp6I	CCWGG	1 cut(s)	2008
PspEI	GGTNACC	1 cut(s)	1568
PspGI	CCWGG	1 cut(s)	2008
PspN4I	GGNNCC	7 cut(s)	16, 333, 908, 1713, 1829, 1919, 2002
PspPI	GGNCC	4 cut(s)	15, 239, 331, 1846
PstI	CTGCAG	3 cut(s)	402, 1242, 2155
PsuI	RGATCY	2 cut(s)	53, 1711
PvuII	CAGCTG	1 cut(s)	779
RsaI	GTAC	4 cut(s)	836, 894, 908, 914
RsaNI	GTAC	4 cut(s)	835, 893, 907, 913
RseI	CAYNNNNRTG	1 cut(s)	320
SapI	GCTCTTC	2 cut(s)	100, 1683
SaqAI	TTAA	7 cut(s)	177, 197, 951, 959, 1461, 1650, 1665
Sau96I	GGNCC	4 cut(s)	15, 239, 331, 1846
SchI	GAGTC	2 cut(s)	242, 1052
ScrFI	CCNGG	1 cut(s)	2010
SfaNI	GCATC	7 cut(s)	1276, 1495, 1575, 1969, 1984, 2042, 2100
SfcI	CTRYAG	4 cut(s)	210, 398, 1238, 2151
SfoI	GGCGCC	2 cut(s)	1829, 1919
SinI	GGWCC	3 cut(s)	15, 331, 1846
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	4 cut(s)	1420, 1523, 1664, 1940
SmoI	CTYRAG	4 cut(s)	1420, 1523, 1664, 1940
Sse9I	AATT	6 cut(s)	74, 672, 945, 1000, 1079, 1232
SseBI	AGGCCT	1 cut(s)	2013
SsiI	CCGC	4 cut(s)	469, 654, 773, 904
SspDI	GGCGCC	2 cut(s)	1827, 1917
SspI	AATATT	1 cut(s)	1026
SspMI	CTAG	8 cut(s)	111, 495, 581, 1124, 1397, 1737, 1761, 2091
StuI	AGGCCT	1 cut(s)	2013
StyD4I	CCNGG	1 cut(s)	2008
StyI	CCWWGG	3 cut(s)	242, 379, 922
TaaI	ACNGT	5 cut(s)	917, 1296, 1655, 1753, 2026
TaiI	ACGT	1 cut(s)	1957
TaqI	TCGA	6 cut(s)	80, 156, 258, 1032, 1479, 1747
TaqII	GACCGA	1 cut(s)	1509
TasI	AATT	6 cut(s)	74, 672, 945, 1000, 1079, 1232
TatI	WGTACW	2 cut(s)	892, 912
TauI	GCSGC	2 cut(s)	656, 776
TfiI	GAWTC	4 cut(s)	4, 153, 711, 965
Tru1I	TTAA	7 cut(s)	177, 197, 951, 959, 1461, 1650, 1665
Tru9I	TTAA	7 cut(s)	177, 197, 951, 959, 1461, 1650, 1665
TscAI	CASTG	8 cut(s)	478, 1301, 1758, 1883, 1931, 2029, 2121, 2140
TseFI	GTSAC	3 cut(s)	1568, 1673, 2084
TseI	GCWGC	9 cut(s)	220, 397, 776, 779, 1110, 1892, 1910, 1972, 2045
Tsp45I	GTSAC	3 cut(s)	1568, 1673, 2084
TspGWI	ACGGA	1 cut(s)	835
TspRI	CASTG	8 cut(s)	478, 1301, 1758, 1883, 1931, 2029, 2121, 2140
Van91I	CCANNNNNTGG	1 cut(s)	1878
Vha464I	CTTAAG	1 cut(s)	1664
VpaK11BI	GGWCC	3 cut(s)	15, 331, 1846
XapI	RAATTY	4 cut(s)	74, 1000, 1079, 1232
XbaI	TCTAGA	1 cut(s)	494
XceI	RCATGY	3 cut(s)	805, 958, 1856
XmnI	GAANNNNTTC	2 cut(s)	1082, 1692
XspI	CTAG	8 cut(s)	111, 495, 581, 1124, 1397, 1737, 1761, 2091
Zsp2I	ATGCAT	1 cut(s)	2035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.