Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Reverse (-)

23765819 .. 23769585

Gene Structure 3767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G237400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGAAGTTCTCAATTCCCTGCACAAGTTGCTTCTTCTCCTCACCTGAAAAGGTCGTGGAAAACGGGATGCAAGATGGAGAAAATCAAGAAAGCTTCAGAATTTTCTCTTCCAAGGAATTGAAGTCTGCCACTAATGGCTTCCATTCCTCAAAAAAGCTTGGAGAAGGTGGCTTTGGCTCTGTCTATAAGGGTCGGCTTAGAGATGGCAGCCTTGTGGCTATAAAAGTGCTTTCCACTGAAATTGAATCTATGAGAGGAGAGAGGGAGTTCATTGCAGAATTGTCTACTCTGTCTGTAATCAGACATGAAAACCTTGTTAGGCTTCAAGGGTGTTGTGTTGATGGAGCTGGCAGATATTTGGTCTACGATTACATGGAAAACAATAGCCTCACACACACTTTACTTGGTGGAGAGCAGAACAGGATGAGATTTAGTTGGGATGCAAGGAGGCATATTTCATTAGGGATAGCTCGAGGACTTGCCTATCTGCACGAGGAGGTTGAACCTCACATTCTGCACAGAGACATTAAAGCCAGTAACATACTTCTTGATGAGAATTTCACACCAAAAGTTGGTGACTTCGGCTTATCAAAGCTGTTAAGAGACAACCATTCTCACATTAGTACTCGTGTAGCAGGGACAATAGGTTATCTTGCTCCAGAATATGCAATTAGTGGGCGTTTGACGCGAAAATCAGATGTTTATAGCTTCGGAGTACTGCTGTTAGAAATTGTCAGCGGCCGTGCAGTTGTGGATTTCGACTTGGAACATGGGGAGCATCACCTGGTTCAGAAGGCATGGGAAGCATTCAAGGCCGGTAATCTTGTACAATTAGTTGATCCTACCCTTCAAATGAACTTTCCTGAAGATGAAGCCGTCCGGTTCTTAAACTTAGGCCTTCTTTGTGTGCAAGAGATGGCCAAGCTCCGGCCGCCAATGTCAAGGGCTGTTAAGATTTTGTCTGGTGAGGTAGACATAAAAGATTCTCAGATTTCAGAACCGGGACTTATTTCTGATATCATGGAAATCAAAATGGGGCAACAGCAGTCATGTGATCAGAGCACTTTCTCCAAAGCCTCCACAGCCAGTAGCACGCAAAACCAGAGTAGATCTGAGGACTTTGTGATGTCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

379

Amino Acids

42.13

Weight (kDa)

5.98

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1135
AccB7I	CCANNNNNTGG	1 cut(s)	572
AccI	GTMKAC	3 cut(s)	284, 363, 972
AccII	CGCG	1 cut(s)	688
AciI	CCGC	2 cut(s)	738, 932
AclWI	GGATC	1 cut(s)	833
AcoI	YGGCCR	3 cut(s)	739, 918, 929
AcsI	RAATTY	2 cut(s)	99, 556
AcuI	CTGAAG	2 cut(s)	79, 885
AfaI	GTAC	3 cut(s)	625, 717, 828
AfiI	CCNNNNNNNGG	2 cut(s)	572, 927
AgsI	TTSAA	6 cut(s)	121, 245, 326, 503, 811, 851
AjnI	CCWGG	1 cut(s)	783
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	7 cut(s)	93, 157, 347, 470, 595, 708, 925
AluI	AGCT	7 cut(s)	93, 157, 347, 470, 595, 708, 925
Alw21I	GWGCWC	1 cut(s)	1064
Alw26I	GTCTC	2 cut(s)	516, 597
AlwI	GGATC	1 cut(s)	833
Ama87I	CYCGRG	1 cut(s)	471
AoxI	GGCC	5 cut(s)	739, 813, 895, 918, 929
ApeKI	GCWGC	1 cut(s)	207
ApoI	RAATTY	2 cut(s)	99, 556
AsuC2I	CCSGG	1 cut(s)	1002
AsuHPI	GGTGA	4 cut(s)	33, 587, 773, 977
AvaI	CYCGRG	1 cut(s)	471
BalI	TGGCCA	1 cut(s)	920
BauI	CACGAG	2 cut(s)	491, 627
Bbv12I	GWGCWC	1 cut(s)	1064
BbvI	GCAGC	1 cut(s)	219
BccI	CCATC	4 cut(s)	68, 197, 335, 910
BceAI	ACGGC	2 cut(s)	726, 860
BciT130I	CCWGG	1 cut(s)	785
BclI	TGATCA	1 cut(s)	1054
BcnI	CCSGG	1 cut(s)	1002
BcoDI	GTCTC	2 cut(s)	516, 597
BglII	AGATCT	1 cut(s)	1109
BisI	GCNGC	3 cut(s)	208, 739, 932
BlsI	GCNGC	3 cut(s)	209, 740, 933
BmcAI	AGTACT	2 cut(s)	625, 717
Bme1390I	CCNGG	2 cut(s)	785, 1002
BmeT110I	CYCGRG	1 cut(s)	471
BmrFI	CCNGG	2 cut(s)	785, 1002
BmsI	GCATC	3 cut(s)	57, 430, 787
BpmI	CTGGAG	1 cut(s)	642
BpuMI	CCSGG	1 cut(s)	1002
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	879
Bsc4I	CCNNNNNNNGG	2 cut(s)	572, 927
Bse118I	RCCGGY	1 cut(s)	815
Bse1I	ACTGG	2 cut(s)	534, 1086
Bse3DI	GCAATG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	785
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	3 cut(s)	72, 429, 445
BseLI	CCNNNNNNNGG	2 cut(s)	572, 927
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	2 cut(s)	1001, 1104
BseNI	ACTGG	2 cut(s)	534, 1086
BseRI	GAGGAG	3 cut(s)	28, 270, 509
BseX3I	CGGCCG	2 cut(s)	739, 929
BseXI	GCAGC	1 cut(s)	219
BsgI	GTGCAG	4 cut(s)	4, 473, 500, 765
Bsh1236I	CGCG	1 cut(s)	688
Bsh1285I	CGRYCG	2 cut(s)	742, 932
BshFI	GGCC	5 cut(s)	741, 815, 897, 920, 931
BsiEI	CGRYCG	2 cut(s)	742, 932
BsiHKAI	GWGCWC	1 cut(s)	1064
BsiHKCI	CYCGRG	1 cut(s)	471
BsiSI	CCGG	4 cut(s)	816, 880, 928, 1001
BslFI	GGGAC	2 cut(s)	652, 1017
BslI	CCNNNNNNNGG	2 cut(s)	572, 927
BsmAI	GTCTC	2 cut(s)	516, 597
BsmFI	GGGAC	2 cut(s)	652, 1017
BsmI	GAATGC	1 cut(s)	806
BsnI	GGCC	5 cut(s)	741, 815, 897, 920, 931
BsoBI	CYCGRG	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	1064
Bsp1407I	TGTACA	1 cut(s)	826
Bsp143I	GATC	3 cut(s)	838, 1054, 1109
BspACI	CCGC	2 cut(s)	738, 932
BspANI	GGCC	5 cut(s)	741, 815, 897, 920, 931
BspCNI	CTCAG	2 cut(s)	1000, 1105
BspFNI	CGCG	1 cut(s)	688
BspPI	GGATC	1 cut(s)	833
BsrDI	GCAATG	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	815
BsrGI	TGTACA	1 cut(s)	826
BsrI	ACTGG	2 cut(s)	534, 1086
BssAI	RCCGGY	1 cut(s)	815
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	3 cut(s)	838, 1054, 1109
BssSI	CACGAG	2 cut(s)	491, 627
BssT1I	CCWWGG	1 cut(s)	111
Bst2BI	CACGAG	2 cut(s)	491, 627
Bst2UI	CCWGG	1 cut(s)	785
Bst6I	CTCTTC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstAUI	TGTACA	1 cut(s)	826
BstC8I	GCNNGC	2 cut(s)	349, 1094
BstDEI	CTNAG	4 cut(s)	197, 892, 987, 1113
BstF5I	GGATG	3 cut(s)	72, 429, 445
BstFNI	CGCG	1 cut(s)	688
BstKTI	GATC	3 cut(s)	841, 1057, 1112
BstMAI	GTCTC	2 cut(s)	516, 597
BstMBI	GATC	3 cut(s)	838, 1054, 1109
BstMCI	CGRYCG	2 cut(s)	742, 932
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 685, 803, 812, 931, 1082
BstNI	CCWGG	1 cut(s)	785
BstSCI	CCNGG	2 cut(s)	783, 1000
BstUI	CGCG	1 cut(s)	688
BstV1I	GCAGC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	1109
BstYI	RGATCY	1 cut(s)	1109
BstZI	CGGCCG	2 cut(s)	739, 929
BsuRI	GGCC	5 cut(s)	741, 815, 897, 920, 931
BtsCI	GGATG	3 cut(s)	72, 429, 445
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	2 cut(s)	349, 1094
Cfr10I	RCCGGY	1 cut(s)	815
CseI	GACGC	1 cut(s)	694
CsiI	ACCWGGT	1 cut(s)	783
Csp6I	GTAC	3 cut(s)	624, 716, 827
CspCI	CAANNNNNGTGG	2 cut(s)	223, 258
CviAII	CATG	6 cut(s)	305, 373, 770, 798, 1021, 1050
CviQI	GTAC	3 cut(s)	624, 716, 827
DdeI	CTNAG	4 cut(s)	197, 892, 987, 1113
DpnI	GATC	3 cut(s)	840, 1056, 1111
DpnII	GATC	3 cut(s)	838, 1054, 1109
EaeI	YGGCCR	3 cut(s)	739, 918, 929
EagI	CGGCCG	2 cut(s)	739, 929
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
EclXI	CGGCCG	2 cut(s)	739, 929
Eco130I	CCWWGG	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	897
Eco32I	GATATC	1 cut(s)	1018
Eco52I	CGGCCG	2 cut(s)	739, 929
Eco57I	CTGAAG	2 cut(s)	79, 885
Eco88I	CYCGRG	1 cut(s)	471
EcoRII	CCWGG	1 cut(s)	783
EcoRV	GATATC	1 cut(s)	1018
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	6 cut(s)	308, 376, 773, 801, 1024, 1053
FaqI	GGGAC	2 cut(s)	652, 1017
FatI	CATG	6 cut(s)	304, 372, 769, 797, 1020, 1049
FbaI	TGATCA	1 cut(s)	1054
FblI	GTMKAC	3 cut(s)	284, 363, 972
Fnu4HI	GCNGC	3 cut(s)	208, 739, 932
FokI	GGATG	3 cut(s)	79, 436, 452
Fsp4HI	GCNGC	3 cut(s)	208, 739, 932
GluI	GCNGC	3 cut(s)	208, 739, 932
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	5 cut(s)	741, 815, 897, 920, 931
HapII	CCGG	4 cut(s)	816, 880, 928, 1001
HgaI	GACGC	1 cut(s)	694
Hin1II	CATG	6 cut(s)	308, 376, 773, 801, 1024, 1053
HindIII	AAGCTT	2 cut(s)	91, 155
HinfI	GANTC	2 cut(s)	245, 983
HpaII	CCGG	4 cut(s)	816, 880, 928, 1001
HphI	GGTGA	4 cut(s)	33, 587, 773, 977
Hpy166II	GTNNAC	3 cut(s)	285, 364, 973
Hpy188III	TCNNGA	4 cut(s)	86, 548, 659, 863
Hpy8I	GTNNAC	3 cut(s)	285, 364, 973
HpyAV	CCTTC	4 cut(s)	158, 787, 857, 908
HpyCH4V	TGCA	9 cut(s)	21, 70, 275, 443, 490, 517, 668, 746, 910
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 685, 803, 812, 931, 1082
HpyF3I	CTNAG	4 cut(s)	197, 892, 987, 1113
Hsp92II	CATG	6 cut(s)	308, 376, 773, 801, 1024, 1053
Ksp22I	TGATCA	1 cut(s)	1054
Kzo9I	GATC	3 cut(s)	838, 1054, 1109
LmnI	GCTCC	4 cut(s)	344, 661, 775, 930
Lsp1109I	GCAGC	1 cut(s)	219
LweI	GCATC	3 cut(s)	57, 430, 787
MabI	ACCWGGT	1 cut(s)	783
MaeIII	GTNAC	2 cut(s)	536, 575
MalI	GATC	3 cut(s)	840, 1056, 1111
MboI	GATC	3 cut(s)	838, 1054, 1109
MboII	GAAGA	3 cut(s)	25, 99, 878
MflI	RGATCY	1 cut(s)	1109
MhlI	GDGCHC	1 cut(s)	1064
MlsI	TGGCCA	1 cut(s)	920
MluCI	AATT	9 cut(s)	12, 99, 116, 240, 278, 556, 669, 729, 830
MluNI	TGGCCA	1 cut(s)	920
Mox20I	TGGCCA	1 cut(s)	920
MscI	TGGCCA	1 cut(s)	920
MseI	TTAA	4 cut(s)	528, 599, 887, 951
Msp20I	TGGCCA	1 cut(s)	920
MspA1I	CMGCKG	1 cut(s)	738
MspI	CCGG	4 cut(s)	816, 880, 928, 1001
MspR9I	CCNGG	2 cut(s)	785, 1002
Mva1269I	GAATGC	1 cut(s)	806
MvaI	CCWGG	1 cut(s)	785
MvnI	CGCG	1 cut(s)	688
MwoI	GCNNNNNNNGC	6 cut(s)	27, 685, 803, 812, 931, 1082
NciI	CCSGG	1 cut(s)	1002
NdeII	GATC	3 cut(s)	838, 1054, 1109
NlaIII	CATG	6 cut(s)	308, 376, 773, 801, 1024, 1053
NmuCI	GTSAC	1 cut(s)	575
PaeR7I	CTCGAG	1 cut(s)	471
PceI	AGGCCT	1 cut(s)	897
PctI	GAATGC	1 cut(s)	806
PfeI	GAWTC	2 cut(s)	245, 983
PflMI	CCANNNNNTGG	1 cut(s)	572
PkrI	GCNGC	3 cut(s)	209, 740, 933
PsiI	TTATAA	1 cut(s)	1135
Psp6I	CCWGG	1 cut(s)	783
PspGI	CCWGG	1 cut(s)	783
PspXI	VCTCGAGB	1 cut(s)	471
PsuI	RGATCY	1 cut(s)	1109
RsaI	GTAC	3 cut(s)	625, 717, 828
RsaNI	GTAC	3 cut(s)	624, 716, 827
SaqAI	TTAA	4 cut(s)	528, 599, 887, 951
SatI	GCNGC	3 cut(s)	208, 739, 932
Sau3AI	GATC	3 cut(s)	838, 1054, 1109
ScaI	AGTACT	2 cut(s)	625, 717
ScrFI	CCNGG	2 cut(s)	785, 1002
SduI	GDGCHC	1 cut(s)	1064
SexAI	ACCWGGT	1 cut(s)	783
SfaNI	GCATC	3 cut(s)	57, 430, 787
Sfr274I	CTCGAG	1 cut(s)	471
SlaI	CTCGAG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	471
SmoI	CTYRAG	1 cut(s)	471
Sse9I	AATT	9 cut(s)	12, 99, 116, 240, 278, 556, 669, 729, 830
SseBI	AGGCCT	1 cut(s)	897
SsiI	CCGC	2 cut(s)	738, 932
StuI	AGGCCT	1 cut(s)	897
StyD4I	CCNGG	2 cut(s)	783, 1000
StyI	CCWWGG	1 cut(s)	111
TaqI	TCGA	2 cut(s)	472, 759
TasI	AATT	9 cut(s)	12, 99, 116, 240, 278, 556, 669, 729, 830
TatI	WGTACW	3 cut(s)	623, 715, 826
TauI	GCSGC	2 cut(s)	741, 934
TfiI	GAWTC	2 cut(s)	245, 983
Tru1I	TTAA	4 cut(s)	528, 599, 887, 951
Tru9I	TTAA	4 cut(s)	528, 599, 887, 951
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	1 cut(s)	207
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	6 cut(s)	17, 259, 321, 447, 869, 885
TspRI	CASTG	1 cut(s)	241
Van91I	CCANNNNNTGG	1 cut(s)	572
XapI	RAATTY	2 cut(s)	99, 556
XhoI	CTCGAG	1 cut(s)	471
XmiI	GTMKAC	3 cut(s)	284, 363, 972
ZrmI	AGTACT	2 cut(s)	625, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.