Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Reverse (-)

18389861 .. 18391991

Gene Structure 2131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1098900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGAAGTTCCCACTTCCTTGCAAAGATTGCTTCGTCTCCTCACCCACAAAGGCCATTCAAAGAAGGATGCGAGATGGTCAAATTCCAGACAACTTGAGAATTTTCTCCTGCAAGGAATTGAAGTCTGCCACCAATGGTTTCCATTCCTCCAACAAGCTTGGAGAAGGCGGCTTTGGCTCTGTTTATAAGGGTCAGCTTAGAGATGGGAACCTTGTGGCTGTGAAAGTGCTTTCCGTTGAACTCGAATCGATGAGAGGAGAGAGGGCATTCATCACCGAATTAGCTGCTCTGTCTGTAATCAGACATGAGAATCTTGTTAGGCTTCAAGGGTGTTGTGTTGATGGAGCTGCAAGATATTTGGTCTATGATTACATGAAAAACAATAGCCTCACACACACTTTACTTGGTGGAGAGCAAAACAGGATGAGATTTAGTTGGGAGGCAAGGCGGGGTAATTCAATAGGAGTAGCTCGAGGACTCGCCTATCTGCATGAGGAAGTTGATCCTCACATTCTGCATAGAGACATTAAATCCAGCAACATTCTTCTTGATGAGAATTTGACACCGAAAGTTGGTGATTTTGGTTTATCGAAGCTGTTGTGGGACAACCATACTCACATTAGTACTCGTGTAGCCGGGACAATAGGCTATCTTGCTCCAGAATACGCTATTAGTGGGCGTTTGACGCGAAAATCAGATACCTATAGCTTCGGAGTGCTGTTGTTGGAAATTGTCAGCGGCCGAGCAGTTGTGGATTTTGACTTGCAACTTGGGGAGCAGTACCTGGTTCAGAAGGTATGGGAAGCGCACAAGGCTGGAAACCTTGCACAACTAGTTGATCCTACACTTCAGATGAACTTTCCTACGGATGAAGCCATTCAGTTCTTGAAGGTAGGACTTCTTTGCGTGCAAGAAAGGGCCAACCAACGGCCACGGATGTCAAAGGCGGTTGAGATGTTGTCCGGAGATGAAGTCCTCAAAGACTCTCATATTTCACAACCCGGGCATGTTTCGGATTTCATGGATATCAAAATGAGGCAAGAGAACTCAAGTGATCAGAGCACTTTCTCCAAGGCCTCCACAGCTAGCAGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

366

Amino Acids

40.68

Weight (kDa)

8.15

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	47 - 317	9.1e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	49 - 320	3.7e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
AccII	CGCG	1 cut(s)	688
AccIII	TCCGGA	1 cut(s)	962
AciI	CCGC	4 cut(s)	168, 448, 738, 947
AclWI	GGATC	2 cut(s)	497, 833
AcoI	YGGCCR	2 cut(s)	739, 929
AcsI	RAATTY	3 cut(s)	81, 99, 556
AcuI	CTGAAG	1 cut(s)	833
AfaI	GTAC	2 cut(s)	625, 782
AfiI	CCNNNNNNNGG	2 cut(s)	572, 927
AgsI	TTSAA	6 cut(s)	59, 121, 239, 326, 459, 889
AhlI	ACTAGT	1 cut(s)	832
AjnI	CCWGG	1 cut(s)	783
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	8 cut(s)	157, 196, 284, 347, 470, 595, 708, 1085
AluI	AGCT	8 cut(s)	157, 196, 284, 347, 470, 595, 708, 1085
Alw21I	GWGCWC	1 cut(s)	1064
Alw26I	GTCTC	2 cut(s)	40, 516
AlwI	GGATC	2 cut(s)	497, 833
AlwNI	CAGNNNCTG	1 cut(s)	784
Ama87I	CYCGRG	2 cut(s)	471, 1001
Aor13HI	TCCGGA	1 cut(s)	962
AoxI	GGCC	5 cut(s)	51, 739, 918, 929, 1074
ApeKI	GCWGC	3 cut(s)	284, 347, 1089
ApoI	RAATTY	3 cut(s)	81, 99, 556
Asp700I	GAANNNNTTC	1 cut(s)	876
AspLEI	GCGC	1 cut(s)	808
AspS9I	GGNCC	1 cut(s)	918
AsuC2I	CCSGG	3 cut(s)	637, 1002, 1003
AsuHPI	GGTGA	3 cut(s)	33, 265, 587
AsuNHI	GCTAGC	1 cut(s)	1085
AvaI	CYCGRG	2 cut(s)	471, 1001
BauI	CACGAG	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	1064
BbvI	GCAGC	2 cut(s)	271, 334
BccI	CCATC	3 cut(s)	68, 197, 335
BceAI	ACGGC	1 cut(s)	944
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	1 cut(s)	785
BclI	TGATCA	1 cut(s)	1054
BcnI	CCSGG	3 cut(s)	637, 1002, 1003
BcoDI	GTCTC	2 cut(s)	40, 516
BcuI	ACTAGT	1 cut(s)	832
BfaI	CTAG	2 cut(s)	833, 1086
BfmI	CTRYAG	1 cut(s)	703
BisI	GCNGC	5 cut(s)	169, 285, 348, 739, 1090
BlsI	GCNGC	5 cut(s)	170, 286, 349, 740, 1091
BmcAI	AGTACT	1 cut(s)	625
Bme1390I	CCNGG	4 cut(s)	637, 785, 1002, 1003
BmeT110I	CYCGRG	2 cut(s)	471, 1001
BmgT120I	GGNCC	1 cut(s)	918
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	4 cut(s)	637, 785, 1002, 1003
BmsI	GCATC	1 cut(s)	57
BmtI	GCTAGC	1 cut(s)	1089
BpmI	CTGGAG	1 cut(s)	642
BpuEI	CTTGAG	2 cut(s)	115, 1033
BpuMI	CCSGG	3 cut(s)	637, 1002, 1003
Bsa29I	ATCGAT	1 cut(s)	248
BsaJI	CCNNGG	3 cut(s)	932, 1001, 1071
BsaWI	WCCGGW	1 cut(s)	962
BsaXI	ACNNNNNCTCC	2 cut(s)	957, 987
Bsc4I	CCNNNNNNNGG	2 cut(s)	572, 927
BseAI	TCCGGA	1 cut(s)	962
BseBI	CCWGG	1 cut(s)	785
BseCI	ATCGAT	1 cut(s)	248
BseDI	CCNNGG	3 cut(s)	932, 1001, 1071
BseGI	GGATG	4 cut(s)	72, 429, 874, 942
BseLI	CCNNNNNNNGG	2 cut(s)	572, 927
BseRI	GAGGAG	2 cut(s)	28, 270
BseX3I	CGGCCG	1 cut(s)	739
BseXI	GCAGC	2 cut(s)	271, 334
Bsh1236I	CGCG	1 cut(s)	688
Bsh1285I	CGRYCG	1 cut(s)	742
BshFI	GGCC	5 cut(s)	53, 741, 920, 931, 1076
BshVI	ATCGAT	1 cut(s)	248
BsiEI	CGRYCG	1 cut(s)	742
BsiHKAI	GWGCWC	1 cut(s)	1064
BsiHKCI	CYCGRG	2 cut(s)	471, 1001
BsiSI	CCGG	3 cut(s)	636, 963, 1002
BslFI	GGGAC	2 cut(s)	617, 652
BslI	CCNNNNNNNGG	2 cut(s)	572, 927
BsmAI	GTCTC	2 cut(s)	40, 516
BsmBI	CGTCTC	1 cut(s)	40
BsmFI	GGGAC	2 cut(s)	617, 652
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	5 cut(s)	53, 741, 920, 931, 1076
BsoBI	CYCGRG	2 cut(s)	471, 1001
Bsp1286I	GDGCHC	1 cut(s)	1064
Bsp13I	TCCGGA	1 cut(s)	962
Bsp143I	GATC	3 cut(s)	502, 838, 1054
BspACI	CCGC	4 cut(s)	168, 448, 738, 947
BspANI	GGCC	5 cut(s)	53, 741, 920, 931, 1076
BspDI	ATCGAT	1 cut(s)	248
BspEI	TCCGGA	1 cut(s)	962
BspFNI	CGCG	1 cut(s)	688
BspLI	GGNNCC	1 cut(s)	209
BspOI	GCTAGC	1 cut(s)	1089
BspPI	GGATC	2 cut(s)	497, 833
BssECI	CCNNGG	3 cut(s)	932, 1001, 1071
BssMI	GATC	3 cut(s)	502, 838, 1054
BssSI	CACGAG	1 cut(s)	627
BssT1I	CCWWGG	1 cut(s)	1071
Bst2BI	CACGAG	1 cut(s)	627
Bst2UI	CCWGG	1 cut(s)	785
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	908, 1087
BstDEI	CTNAG	1 cut(s)	197
BstDSI	CCRYGG	1 cut(s)	932
BstF5I	GGATG	4 cut(s)	72, 429, 874, 942
BstFNI	CGCG	1 cut(s)	688
BstHHI	GCGC	1 cut(s)	808
BstKTI	GATC	3 cut(s)	505, 841, 1057
BstMAI	GTCTC	2 cut(s)	40, 516
BstMBI	GATC	3 cut(s)	502, 838, 1054
BstMCI	CGRYCG	1 cut(s)	742
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 174, 685, 812, 1082
BstNI	CCWGG	1 cut(s)	785
BstNSI	RCATGY	1 cut(s)	1010
BstSCI	CCNGG	4 cut(s)	635, 783, 1000, 1001
BstSFI	CTRYAG	1 cut(s)	703
BstUI	CGCG	1 cut(s)	688
BstV1I	GCAGC	2 cut(s)	271, 334
BstZI	CGGCCG	1 cut(s)	739
Bsu15I	ATCGAT	1 cut(s)	248
BsuRI	GGCC	5 cut(s)	53, 741, 920, 931, 1076
BsuTUI	ATCGAT	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	932
BtsCI	GGATG	4 cut(s)	72, 429, 874, 942
Cac8I	GCNNGC	2 cut(s)	908, 1087
CaiI	CAGNNNCTG	1 cut(s)	784
CfoI	GCGC	1 cut(s)	808
Cfr13I	GGNCC	1 cut(s)	918
Cfr9I	CCCGGG	1 cut(s)	1001
ClaI	ATCGAT	1 cut(s)	248
CseI	GACGC	1 cut(s)	694
CsiI	ACCWGGT	1 cut(s)	783
Csp6I	GTAC	2 cut(s)	624, 781
CviAII	CATG	5 cut(s)	305, 373, 491, 1007, 1021
CviQI	GTAC	2 cut(s)	624, 781
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	3 cut(s)	504, 840, 1056
DpnII	GATC	3 cut(s)	502, 838, 1054
EaeI	YGGCCR	2 cut(s)	739, 929
EagI	CGGCCG	1 cut(s)	739
EclXI	CGGCCG	1 cut(s)	739
Eco130I	CCWWGG	1 cut(s)	1071
Eco147I	AGGCCT	1 cut(s)	1076
Eco32I	GATATC	1 cut(s)	1027
Eco52I	CGGCCG	1 cut(s)	739
Eco57I	CTGAAG	1 cut(s)	833
Eco88I	CYCGRG	2 cut(s)	471, 1001
EcoRII	CCWGG	1 cut(s)	783
EcoRV	GATATC	1 cut(s)	1027
EcoT14I	CCWWGG	1 cut(s)	1071
ErhI	CCWWGG	1 cut(s)	1071
Esp3I	CGTCTC	1 cut(s)	40
FaeI	CATG	5 cut(s)	308, 376, 494, 1010, 1024
FaqI	GGGAC	2 cut(s)	617, 652
FatI	CATG	5 cut(s)	304, 372, 490, 1006, 1020
FauI	CCCGC	1 cut(s)	441
FbaI	TGATCA	1 cut(s)	1054
Fnu4HI	GCNGC	5 cut(s)	169, 285, 348, 739, 1090
FokI	GGATG	4 cut(s)	79, 436, 881, 949
Fsp4HI	GCNGC	5 cut(s)	169, 285, 348, 739, 1090
FspBI	CTAG	2 cut(s)	833, 1086
GlaI	GCGC	1 cut(s)	807
GluI	GCNGC	5 cut(s)	169, 285, 348, 739, 1090
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	5 cut(s)	53, 741, 920, 931, 1076
HapII	CCGG	3 cut(s)	636, 963, 1002
HgaI	GACGC	1 cut(s)	694
HhaI	GCGC	1 cut(s)	808
Hin1II	CATG	5 cut(s)	308, 376, 494, 1010, 1024
Hin6I	GCGC	1 cut(s)	806
HinP1I	GCGC	1 cut(s)	806
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	4 cut(s)	245, 310, 477, 983
HpaII	CCGG	3 cut(s)	636, 963, 1002
HphI	GGTGA	3 cut(s)	33, 265, 587
Hpy188I	TCNGA	7 cut(s)	302, 697, 713, 792, 852, 1015, 1059
Hpy188III	TCNNGA	5 cut(s)	86, 548, 659, 886, 963
HpyAV	CCTTC	4 cut(s)	57, 158, 787, 883
HpyCH4V	TGCA	8 cut(s)	21, 111, 350, 490, 517, 766, 827, 910
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 174, 685, 812, 1082
HpyF3I	CTNAG	1 cut(s)	197
Hsp92II	CATG	5 cut(s)	308, 376, 494, 1010, 1024
HspAI	GCGC	1 cut(s)	806
Kpn2I	TCCGGA	1 cut(s)	962
Ksp22I	TGATCA	1 cut(s)	1054
Kzo9I	GATC	3 cut(s)	502, 838, 1054
LmnI	GCTCC	3 cut(s)	344, 661, 775
Lsp1109I	GCAGC	2 cut(s)	271, 334
LweI	GCATC	1 cut(s)	57
MabI	ACCWGGT	1 cut(s)	783
MaeI	CTAG	2 cut(s)	833, 1086
MalI	GATC	3 cut(s)	504, 840, 1056
MboI	GATC	3 cut(s)	502, 838, 1054
MboII	GAAGA	1 cut(s)	536
MhlI	GDGCHC	1 cut(s)	1064
MluCI	AATT	7 cut(s)	81, 99, 116, 278, 454, 556, 729
MlyI	GAGTC	2 cut(s)	471, 977
MmeI	TCCRAC	2 cut(s)	174, 705
MroI	TCCGGA	1 cut(s)	962
MroXI	GAANNNNTTC	1 cut(s)	876
MseI	TTAA	1 cut(s)	528
MspA1I	CMGCKG	1 cut(s)	738
MspI	CCGG	3 cut(s)	636, 963, 1002
MspR9I	CCNGG	4 cut(s)	637, 785, 1002, 1003
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	785
MvnI	CGCG	1 cut(s)	688
MwoI	GCNNNNNNNGC	5 cut(s)	27, 174, 685, 812, 1082
NciI	CCSGG	3 cut(s)	637, 1002, 1003
NdeII	GATC	3 cut(s)	502, 838, 1054
NheI	GCTAGC	1 cut(s)	1085
NlaIII	CATG	5 cut(s)	308, 376, 494, 1010, 1024
NlaIV	GGNNCC	1 cut(s)	209
NmeAIII	GCCGAG	1 cut(s)	767
NspI	RCATGY	1 cut(s)	1010
PaeR7I	CTCGAG	1 cut(s)	471
PceI	AGGCCT	1 cut(s)	1076
PctI	GAATGC	1 cut(s)	266
PdmI	GAANNNNTTC	1 cut(s)	876
PfeI	GAWTC	2 cut(s)	245, 310
PkrI	GCNGC	5 cut(s)	170, 286, 349, 740, 1091
PleI	GAGTC	2 cut(s)	471, 977
PpsI	GAGTC	2 cut(s)	471, 977
PsiI	TTATAA	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	783
PspGI	CCWGG	1 cut(s)	783
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	918
PspXI	VCTCGAGB	1 cut(s)	471
PstNI	CAGNNNCTG	1 cut(s)	784
RsaI	GTAC	2 cut(s)	625, 782
RsaNI	GTAC	2 cut(s)	624, 781
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	5 cut(s)	169, 285, 348, 739, 1090
Sau3AI	GATC	3 cut(s)	502, 838, 1054
Sau96I	GGNCC	1 cut(s)	918
ScaI	AGTACT	1 cut(s)	625
SchI	GAGTC	2 cut(s)	471, 977
ScrFI	CCNGG	4 cut(s)	637, 785, 1002, 1003
SduI	GDGCHC	1 cut(s)	1064
SexAI	ACCWGGT	1 cut(s)	783
SfaNI	GCATC	1 cut(s)	57
SfcI	CTRYAG	1 cut(s)	703
Sfr274I	CTCGAG	1 cut(s)	471
SlaI	CTCGAG	1 cut(s)	471
SmaI	CCCGGG	1 cut(s)	1003
SmlI	CTYRAG	3 cut(s)	94, 471, 1048
SmoI	CTYRAG	3 cut(s)	94, 471, 1048
SpeI	ACTAGT	1 cut(s)	832
Sse9I	AATT	7 cut(s)	81, 99, 116, 278, 454, 556, 729
SseBI	AGGCCT	1 cut(s)	1076
SsiI	CCGC	4 cut(s)	168, 448, 738, 947
SspMI	CTAG	2 cut(s)	833, 1086
StuI	AGGCCT	1 cut(s)	1076
StyD4I	CCNGG	4 cut(s)	635, 783, 1000, 1001
StyI	CCWWGG	1 cut(s)	1071
TaqI	TCGA	4 cut(s)	243, 248, 472, 590
TasI	AATT	7 cut(s)	81, 99, 116, 278, 454, 556, 729
TatI	WGTACW	1 cut(s)	623
TauI	GCSGC	2 cut(s)	171, 741
TfiI	GAWTC	2 cut(s)	245, 310
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TseI	GCWGC	3 cut(s)	284, 347, 1089
TspDTI	ATGAA	7 cut(s)	17, 259, 389, 869, 885, 984, 1009
TspGWI	ACGGA	3 cut(s)	223, 881, 949
TspMI	CCCGGG	1 cut(s)	1001
XapI	RAATTY	3 cut(s)	81, 99, 556
XceI	RCATGY	1 cut(s)	1010
XhoI	CTCGAG	1 cut(s)	471
XmaI	CCCGGG	1 cut(s)	1001
XmnI	GAANNNNTTC	1 cut(s)	876
XspI	CTAG	2 cut(s)	833, 1086
ZrmI	AGTACT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.