Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Reverse (-)

18205166 .. 18207678

Gene Structure 2513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG200700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAATTTAGTTGGGATGCAAGGAGGAGAGTTGCATTAGGAGTAGCTCGCGGACTTGCCTATCTGCATTTCGAGGTTGAACCTCATATTCTGCACCGAGACATTAAGCCGAGTAACATACTTCTTGATGAAAACTTCATGCCAAAGGTTGGAGATTTCGGCTTATCAAAGCTGTTGAGAGAAAACCATTCTCATATCAGTACACGGGTTGCTGGGACAATGGGTTATCTTGCTCCAGAATACGCTATTAGCGGGCGCTTGACTCGAAAATCAGATGTTTACAGCTTTGGAGTTCTGCTGTTGGAGATTGTCAGCGGCCGTGCAATTGTGGATTTTGATATGCAACTTGGGGAGCAATTCCTGGTTCAAAAGGCATGGGAATCATACAAGGCCGACAACCTCCTGCAATTAGTTGATCCTATACTTCAAATGAACTTCCCCAAAGATGAAGCACTCCGATTCTTAAAAGTAGGCCTTCTTTGTGTGCAAGAAATGGCAAGACTCCGGCCACGAATGACGAGGACTGTTGAGATGTTGGCGGGTGAGATTGACATGAAAAATGATCAGATTTCACAACCTGGACTTGTTTCTGATTTCACAAACATCAAAATGGGTCAGCATCAGTCAGGTGATCATAGCACTTTCTCCAGGGTCTCCGCAGCTAGTACCACACAAACCCGCTTTTCATCTGAGGAGTTCGGGTTATCCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

237

Amino Acids

26.78

Weight (kDa)

7.07

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 168	4.1e-27	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	7 - 179	8.4e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccII	CGCG	1 cut(s)	51
AciI	CCGC	6 cut(s)	51, 252, 315, 539, 657, 679
AclWI	GGATC	1 cut(s)	410
AcoI	YGGCCR	2 cut(s)	316, 506
AcsI	RAATTY	1 cut(s)	5
AfaI	GTAC	2 cut(s)	202, 667
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	80, 368, 428
AjnI	CCWGG	3 cut(s)	360, 577, 647
AluBI	AGCT	4 cut(s)	47, 172, 285, 662
AluI	AGCT	4 cut(s)	47, 172, 285, 662
Alw26I	GTCTC	2 cut(s)	93, 658
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	4 cut(s)	316, 390, 472, 506
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	554, 641
BbvI	GCAGC	1 cut(s)	671
BceAI	ACGGC	1 cut(s)	303
BciT130I	CCWGG	3 cut(s)	362, 579, 649
BclI	TGATCA	2 cut(s)	562, 631
BcoDI	GTCTC	2 cut(s)	93, 658
BfaI	CTAG	1 cut(s)	663
BfoI	RGCGCY	1 cut(s)	259
BisI	GCNGC	2 cut(s)	316, 660
BlsI	GCNGC	2 cut(s)	317, 661
Bme1390I	CCNGG	3 cut(s)	362, 579, 649
BmrFI	CCNGG	3 cut(s)	362, 579, 649
BmsI	GCATC	2 cut(s)	7, 628
BpmI	CTGGAG	2 cut(s)	219, 631
BsaI	GGTCTC	1 cut(s)	658
BsaJI	CCNNGG	1 cut(s)	648
BsaXI	ACNNNNNCTCC	1 cut(s)	686
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
BseBI	CCWGG	3 cut(s)	362, 579, 649
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	681
BseRI	GAGGAG	2 cut(s)	40, 707
BseX3I	CGGCCG	1 cut(s)	316
BseXI	GCAGC	1 cut(s)	671
BseYI	CCCAGC	1 cut(s)	212
BsgI	GTGCAG	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	51
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	4 cut(s)	318, 392, 474, 508
BsiEI	CGRYCG	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	505
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	2 cut(s)	93, 658
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	4 cut(s)	318, 392, 474, 508
Bso31I	GGTCTC	1 cut(s)	658
Bsp143I	GATC	3 cut(s)	415, 562, 631
BspACI	CCGC	6 cut(s)	51, 252, 315, 539, 657, 679
BspANI	GGCC	4 cut(s)	318, 392, 474, 508
BspCNI	CTCAG	1 cut(s)	682
BspFNI	CGCG	1 cut(s)	51
BspPI	GGATC	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	658
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	3 cut(s)	415, 562, 631
Bst2UI	CCWGG	3 cut(s)	362, 579, 649
Bst4CI	ACNGT	1 cut(s)	526
BstC8I	GCNNGC	2 cut(s)	49, 254
BstDEI	CTNAG	1 cut(s)	690
BstF5I	GGATG	1 cut(s)	22
BstFNI	CGCG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	3 cut(s)	418, 565, 634
BstMAI	GTCTC	2 cut(s)	93, 658
BstMBI	GATC	3 cut(s)	415, 562, 631
BstMCI	CGRYCG	1 cut(s)	319
BstNI	CCWGG	3 cut(s)	362, 579, 649
BstSCI	CCNGG	3 cut(s)	360, 577, 647
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	671
BstZI	CGGCCG	1 cut(s)	316
BsuRI	GGCC	4 cut(s)	318, 392, 474, 508
BtsCI	GGATG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	49, 254
CfoI	GCGC	1 cut(s)	258
Csp6I	GTAC	2 cut(s)	201, 666
CviAII	CATG	3 cut(s)	139, 375, 553
CviQI	GTAC	2 cut(s)	201, 666
DdeI	CTNAG	1 cut(s)	690
DpnI	GATC	3 cut(s)	417, 564, 633
DpnII	GATC	3 cut(s)	415, 562, 631
EaeI	YGGCCR	2 cut(s)	316, 506
EagI	CGGCCG	1 cut(s)	316
EclXI	CGGCCG	1 cut(s)	316
Eco147I	AGGCCT	1 cut(s)	474
Eco31I	GGTCTC	1 cut(s)	658
Eco52I	CGGCCG	1 cut(s)	316
EcoRII	CCWGG	3 cut(s)	360, 577, 647
FaeI	CATG	3 cut(s)	142, 378, 556
FalI	AAGNNNNNCTT	2 cut(s)	459, 491
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	3 cut(s)	138, 374, 552
FauI	CCCGC	3 cut(s)	245, 532, 686
FbaI	TGATCA	2 cut(s)	562, 631
Fnu4HI	GCNGC	2 cut(s)	316, 660
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	316, 660
FspBI	CTAG	1 cut(s)	663
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	2 cut(s)	316, 660
GsaI	CCCAGC	1 cut(s)	216
GsuI	CTGGAG	2 cut(s)	219, 631
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	4 cut(s)	318, 392, 474, 508
HapII	CCGG	1 cut(s)	505
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	3 cut(s)	142, 378, 556
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	4 cut(s)	262, 380, 459, 501
HpaII	CCGG	1 cut(s)	505
HphI	GGTGA	2 cut(s)	554, 641
Hpy166II	GTNNAC	2 cut(s)	203, 280
Hpy188I	TCNGA	5 cut(s)	274, 458, 567, 592, 691
Hpy188III	TCNNGA	2 cut(s)	125, 236
Hpy8I	GTNNAC	2 cut(s)	203, 280
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4V	TGCA	8 cut(s)	20, 35, 67, 94, 323, 343, 406, 487
HpyF3I	CTNAG	1 cut(s)	690
Hsp92II	CATG	3 cut(s)	142, 378, 556
HspAI	GCGC	1 cut(s)	256
Ksp22I	TGATCA	2 cut(s)	562, 631
Kzo9I	GATC	3 cut(s)	415, 562, 631
LmnI	GCTCC	2 cut(s)	238, 352
Lsp1109I	GCAGC	1 cut(s)	671
LweI	GCATC	2 cut(s)	7, 628
MaeI	CTAG	1 cut(s)	663
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	3 cut(s)	417, 564, 633
MboI	GATC	3 cut(s)	415, 562, 631
MfeI	CAATTG	1 cut(s)	324
MluCI	AATT	4 cut(s)	5, 324, 356, 407
MlyI	GAGTC	2 cut(s)	256, 495
MmeI	TCCRAC	2 cut(s)	130, 282
MnlI	CCTC	6 cut(s)	18, 67, 93, 410, 513, 685
MseI	TTAA	2 cut(s)	105, 464
MslI	CAYNNNNRTG	1 cut(s)	608
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	1 cut(s)	505
MspR9I	CCNGG	3 cut(s)	362, 579, 649
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	3 cut(s)	362, 579, 649
MvnI	CGCG	1 cut(s)	51
NdeII	GATC	3 cut(s)	415, 562, 631
NlaIII	CATG	3 cut(s)	142, 378, 556
NmeAIII	GCCGAG	1 cut(s)	135
PceI	AGGCCT	1 cut(s)	474
PfeI	GAWTC	2 cut(s)	380, 459
PflMI	CCANNNNNTGG	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	317, 661
PleI	GAGTC	2 cut(s)	256, 495
PpsI	GAGTC	2 cut(s)	256, 495
Psp6I	CCWGG	3 cut(s)	360, 577, 647
PspFI	CCCAGC	1 cut(s)	212
PspGI	CCWGG	3 cut(s)	360, 577, 647
RsaI	GTAC	2 cut(s)	202, 667
RsaNI	GTAC	2 cut(s)	201, 666
RseI	CAYNNNNRTG	1 cut(s)	608
SaqAI	TTAA	2 cut(s)	105, 464
SatI	GCNGC	2 cut(s)	316, 660
Sau3AI	GATC	3 cut(s)	415, 562, 631
SchI	GAGTC	2 cut(s)	256, 495
ScrFI	CCNGG	3 cut(s)	362, 579, 649
SfaNI	GCATC	2 cut(s)	7, 628
SmiMI	CAYNNNNRTG	1 cut(s)	608
Sse9I	AATT	4 cut(s)	5, 324, 356, 407
SseBI	AGGCCT	1 cut(s)	474
SsiI	CCGC	6 cut(s)	51, 252, 315, 539, 657, 679
SspMI	CTAG	1 cut(s)	663
StuI	AGGCCT	1 cut(s)	474
StyD4I	CCNGG	3 cut(s)	360, 577, 647
TaaI	ACNGT	1 cut(s)	526
TaqI	TCGA	2 cut(s)	72, 265
TasI	AATT	4 cut(s)	5, 324, 356, 407
TatI	WGTACW	1 cut(s)	200
TauI	GCSGC	1 cut(s)	318
TfiI	GAWTC	2 cut(s)	380, 459
Tru1I	TTAA	2 cut(s)	105, 464
Tru9I	TTAA	2 cut(s)	105, 464
TseI	GCWGC	1 cut(s)	659
TspDTI	ATGAA	7 cut(s)	17, 127, 144, 446, 462, 569, 675
Van91I	CCANNNNNTGG	1 cut(s)	149
XapI	RAATTY	1 cut(s)	5
XspI	CTAG	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.