Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000433.1

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Forward (+)

40761 .. 45568

Gene Structure 4808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000433.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atgtgctttgattggactctgaagggaagattaaatgacggaagagatgtggccgtgaaagttctttcagtggaatcaagacaaggtgacaacgagttcatggctgagctatcatcagtctccaacattagtcacgaaaatttggtgaagttgaacggcggttgcattgaaggccgtcgtagaattcttgtttatgattacatggaacacaacagcctcgctcgtatcttgctagatgacaaaaccagatcaaaattggattggagagtgcggaaagaaatttgtataggaattgcaaggggacttatccatattcatgaagaggttaaaccgcacattgtacacagagacatcaaagcaagcaacatacttttggagaagaacttttatccaagaatttccgattttggattatcgaagctctttccagtacacgtttctcacattactacacgagtggccggaactttaggttatattgctccggaatatgcggtcaccggtcatctaacgcggaaatcagacgtgtacagttacggagtactgattttgcagatagtcagtggacgatcggcagttgacttcgatctagaacttggagaacactatcttgtccaaaaggcatgggaaatgcacatggacaacagactcttagatatagcggactcgacacttcagcatgatggcaacttttcagagaaggaagctctccattttctaaaggtgggtctacattgtgtacaagagaaatgcaacctcaggccaaaaatgtcagcagccattgaaatgatgatgatcgatcagaatgatcagatcaaagtgaatgatttcaacaacgtggaaataaggcagccaggagtgatcatcaataatatggacttgaaaatagcgcagaggaagaataaaagaagctcaaaattaagcattagtagcatgcaatgcccacaagtgtacccttttaatactagagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

324

Amino Acids

37.08

Weight (kDa)

8.44

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	730
AccII	CGCG	1 cut(s)	514
AccIII	TCCGGA	1 cut(s)	484
AciI	CCGC	6 cut(s)	159, 271, 332, 494, 514, 662
AcoI	YGGCCR	2 cut(s)	51, 459
AcsI	RAATTY	4 cut(s)	139, 183, 279, 396
AcuI	CTGAAG	2 cut(s)	41, 659
AfaI	GTAC	6 cut(s)	342, 432, 530, 543, 741, 953
AflIII	ACRYGT	2 cut(s)	433, 525
AgeI	ACCGGT	1 cut(s)	500
AgsI	TTSAA	5 cut(s)	154, 170, 785, 832, 883
AjiI	CACGTC	1 cut(s)	526
AjnI	CCWGG	1 cut(s)	853
AluBI	AGCT	4 cut(s)	109, 421, 707, 912
AluI	AGCT	4 cut(s)	109, 421, 707, 912
Alw26I	GTCTC	2 cut(s)	124, 342
Aor13HI	TCCGGA	1 cut(s)	484
AoxI	GGCC	4 cut(s)	51, 172, 459, 761
ApeKI	GCWGC	2 cut(s)	776, 850
ApoI	RAATTY	4 cut(s)	139, 183, 279, 396
AsiGI	ACCGGT	1 cut(s)	500
Asp700I	GAANNNNTTC	1 cut(s)	827
AspLEI	GCGC	1 cut(s)	892
AsuHPI	GGTGA	3 cut(s)	98, 157, 490
AxyI	CCTNAGG	1 cut(s)	758
BaeI	ACNNNNGTAYC	2 cut(s)	935, 968
BauI	CACGAG	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	788, 862
BccI	CCATC	1 cut(s)	677
BceAI	ACGGC	3 cut(s)	38, 159, 172
BciT130I	CCWGG	1 cut(s)	855
BclI	TGATCA	2 cut(s)	808, 861
BcoDI	GTCTC	2 cut(s)	124, 342
BfaI	CTAG	3 cut(s)	233, 590, 966
BisI	GCNGC	2 cut(s)	777, 851
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	2 cut(s)	778, 852
BmcAI	AGTACT	1 cut(s)	543
Bme1390I	CCNGG	1 cut(s)	855
BmgBI	CACGTC	1 cut(s)	526
BmrFI	CCNGG	1 cut(s)	855
Bpu1102I	GCTNAGC	1 cut(s)	105
Bsa29I	ATCGAT	1 cut(s)	798
BsaBI	GATNNNNATC	1 cut(s)	794
BsaWI	WCCGGW	2 cut(s)	484, 500
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	428
Bse21I	CCTNAGG	1 cut(s)	758
Bse3DI	GCAATG	1 cut(s)	944
Bse8I	GATNNNNATC	1 cut(s)	794
BseAI	TCCGGA	1 cut(s)	484
BseBI	CCWGG	1 cut(s)	855
BseCI	ATCGAT	1 cut(s)	798
BseJI	GATNNNNATC	1 cut(s)	794
BseMI	GCAATG	1 cut(s)	944
BseMII	CTCAG	2 cut(s)	96, 772
BseNI	ACTGG	1 cut(s)	428
BseXI	GCAGC	2 cut(s)	788, 862
Bsh1236I	CGCG	1 cut(s)	514
Bsh1285I	CGRYCG	1 cut(s)	572
BshFI	GGCC	4 cut(s)	53, 174, 461, 763
BshTI	ACCGGT	1 cut(s)	500
BshVI	ATCGAT	1 cut(s)	798
BsiEI	CGRYCG	1 cut(s)	572
BsiSI	CCGG	3 cut(s)	462, 485, 501
BslFI	GGGAC	1 cut(s)	315
BsmAI	GTCTC	2 cut(s)	124, 342
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	4 cut(s)	53, 174, 461, 763
Bsp13I	TCCGGA	1 cut(s)	484
Bsp1407I	TGTACA	3 cut(s)	340, 528, 739
Bsp143I	GATC	8 cut(s)	248, 569, 586, 795, 799, 808, 813, 861
Bsp1720I	GCTNAGC	1 cut(s)	105
BspACI	CCGC	6 cut(s)	159, 271, 332, 494, 514, 662
BspANI	GGCC	4 cut(s)	53, 174, 461, 763
BspCNI	CTCAG	2 cut(s)	97, 771
BspDI	ATCGAT	1 cut(s)	798
BspEI	TCCGGA	1 cut(s)	484
BspFNI	CGCG	1 cut(s)	514
BspHI	TCATGA	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	944
BsrFI	RCCGGY	1 cut(s)	500
BsrGI	TGTACA	3 cut(s)	340, 528, 739
BsrI	ACTGG	1 cut(s)	428
BssAI	RCCGGY	1 cut(s)	500
BssMI	GATC	8 cut(s)	248, 569, 586, 795, 799, 808, 813, 861
BssSI	CACGAG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	855
Bst4CI	ACNGT	1 cut(s)	533
Bst6I	CTCTTC	2 cut(s)	37, 315
BstAPI	GCANNNNNTGC	1 cut(s)	939
BstAUI	TGTACA	3 cut(s)	340, 528, 739
BstC8I	GCNNGC	2 cut(s)	361, 935
BstDEI	CTNAG	3 cut(s)	105, 652, 758
BstEII	GGTNACC	1 cut(s)	496
BstFNI	CGCG	1 cut(s)	514
BstHHI	GCGC	1 cut(s)	892
BstKTI	GATC	8 cut(s)	251, 572, 589, 798, 802, 811, 816, 864
BstMAI	GTCTC	2 cut(s)	124, 342
BstMBI	GATC	8 cut(s)	248, 569, 586, 795, 799, 808, 813, 861
BstMCI	CGRYCG	1 cut(s)	572
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 930, 939
BstNI	CCWGG	1 cut(s)	855
BstNSI	RCATGY	1 cut(s)	937
BstPI	GGTNACC	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	853
BstUI	CGCG	1 cut(s)	514
BstV1I	GCAGC	2 cut(s)	788, 862
Bsu15I	ATCGAT	1 cut(s)	798
Bsu36I	CCTNAGG	1 cut(s)	758
BsuRI	GGCC	4 cut(s)	53, 174, 461, 763
BsuTUI	ATCGAT	1 cut(s)	798
BtrI	CACGTC	1 cut(s)	526
BtsIMutI	CAGTG	2 cut(s)	75, 568
Cac8I	GCNNGC	2 cut(s)	361, 935
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	1 cut(s)	892
Cfr10I	RCCGGY	1 cut(s)	500
ClaI	ATCGAT	1 cut(s)	798
Csp6I	GTAC	6 cut(s)	341, 431, 529, 542, 740, 952
CspAI	ACCGGT	1 cut(s)	500
CviAII	CATG	7 cut(s)	100, 202, 317, 624, 637, 680, 934
CviQI	GTAC	6 cut(s)	341, 431, 529, 542, 740, 952
DdeI	CTNAG	3 cut(s)	105, 652, 758
DpnI	GATC	8 cut(s)	250, 571, 588, 797, 801, 810, 815, 863
DpnII	GATC	8 cut(s)	248, 569, 586, 795, 799, 808, 813, 861
EaeI	YGGCCR	2 cut(s)	51, 459
Eam1104I	CTCTTC	2 cut(s)	37, 315
EarI	CTCTTC	2 cut(s)	37, 315
Eco57I	CTGAAG	2 cut(s)	41, 659
Eco81I	CCTNAGG	1 cut(s)	758
Eco91I	GGTNACC	1 cut(s)	496
EcoO65I	GGTNACC	1 cut(s)	496
EcoRI	GAATTC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	853
FaeI	CATG	7 cut(s)	103, 205, 320, 627, 640, 683, 937
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	7 cut(s)	99, 201, 316, 623, 636, 679, 933
FbaI	TGATCA	2 cut(s)	808, 861
FblI	GTMKAC	1 cut(s)	730
Fnu4HI	GCNGC	2 cut(s)	777, 851
Fsp4HI	GCNGC	2 cut(s)	777, 851
FspBI	CTAG	3 cut(s)	233, 590, 966
GlaI	GCGC	1 cut(s)	891
GluI	GCNGC	2 cut(s)	777, 851
HaeIII	GGCC	4 cut(s)	53, 174, 461, 763
HapII	CCGG	3 cut(s)	462, 485, 501
HhaI	GCGC	1 cut(s)	892
Hin1II	CATG	7 cut(s)	103, 205, 320, 627, 640, 683, 937
Hin6I	GCGC	1 cut(s)	890
HinP1I	GCGC	1 cut(s)	890
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HinfI	GANTC	4 cut(s)	16, 74, 648, 665
HpaII	CCGG	3 cut(s)	462, 485, 501
HphI	GGTGA	3 cut(s)	98, 157, 490
Hpy166II	GTNNAC	8 cut(s)	343, 433, 529, 566, 580, 731, 740, 952
Hpy188I	TCNGA	6 cut(s)	21, 403, 523, 697, 804, 813
Hpy188III	TCNNGA	5 cut(s)	78, 134, 317, 485, 590
Hpy8I	GTNNAC	8 cut(s)	343, 433, 529, 566, 580, 731, 740, 952
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	3 cut(s)	16, 164, 694
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4IV	ACGT	3 cut(s)	435, 525, 837
HpyCH4V	TGCA	6 cut(s)	165, 296, 553, 634, 753, 937
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 930, 939
HpyF3I	CTNAG	3 cut(s)	105, 652, 758
HpySE526I	ACGT	3 cut(s)	435, 525, 837
Hsp92II	CATG	7 cut(s)	103, 205, 320, 627, 640, 683, 937
HspAI	GCGC	1 cut(s)	890
Kpn2I	TCCGGA	1 cut(s)	484
Ksp22I	TGATCA	2 cut(s)	808, 861
Kzo9I	GATC	8 cut(s)	248, 569, 586, 795, 799, 808, 813, 861
LmnI	GCTCC	1 cut(s)	487
LpnPI	CCDG	8 cut(s)	259, 441, 475, 498, 514, 745, 840, 867
Lsp1109I	GCAGC	2 cut(s)	788, 862
MaeI	CTAG	3 cut(s)	233, 590, 966
MaeII	ACGT	3 cut(s)	435, 525, 837
MaeIII	GTNAC	4 cut(s)	86, 131, 496, 533
MalI	GATC	8 cut(s)	250, 571, 588, 797, 801, 810, 815, 863
MboI	GATC	8 cut(s)	248, 569, 586, 795, 799, 808, 813, 861
MboII	GAAGA	5 cut(s)	39, 54, 332, 391, 910
MluCI	AATT	7 cut(s)	139, 183, 254, 279, 291, 396, 917
MlyI	GAGTC	3 cut(s)	10, 642, 659
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	4 cut(s)	227, 316, 767, 888
MroI	TCCGGA	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	827
MseI	TTAA	5 cut(s)	32, 327, 920, 960, 973
MslI	CAYNNNNRTG	2 cut(s)	315, 785
MspI	CCGG	3 cut(s)	462, 485, 501
MspR9I	CCNGG	1 cut(s)	855
MvaI	CCWGG	1 cut(s)	855
MvnI	CGCG	1 cut(s)	514
MwoI	GCNNNNNNNGC	3 cut(s)	171, 930, 939
NdeII	GATC	8 cut(s)	248, 569, 586, 795, 799, 808, 813, 861
NlaIII	CATG	7 cut(s)	103, 205, 320, 627, 640, 683, 937
NmuCI	GTSAC	3 cut(s)	86, 131, 496
NspI	RCATGY	1 cut(s)	937
PaeI	GCATGC	1 cut(s)	937
PagI	TCATGA	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	827
PfeI	GAWTC	1 cut(s)	74
PinAI	ACCGGT	1 cut(s)	500
PkrI	GCNGC	2 cut(s)	778, 852
Ple19I	CGATCG	1 cut(s)	572
PleI	GAGTC	3 cut(s)	10, 642, 659
PpsI	GAGTC	3 cut(s)	10, 642, 659
Psp6I	CCWGG	1 cut(s)	853
PspEI	GGTNACC	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	853
PvuI	CGATCG	1 cut(s)	572
RsaI	GTAC	6 cut(s)	342, 432, 530, 543, 741, 953
RsaNI	GTAC	6 cut(s)	341, 431, 529, 542, 740, 952
RseI	CAYNNNNRTG	2 cut(s)	315, 785
SaqAI	TTAA	5 cut(s)	32, 327, 920, 960, 973
SatI	GCNGC	2 cut(s)	777, 851
Sau3AI	GATC	8 cut(s)	248, 569, 586, 795, 799, 808, 813, 861
ScaI	AGTACT	1 cut(s)	543
SchI	GAGTC	3 cut(s)	10, 642, 659
ScrFI	CCNGG	1 cut(s)	855
SmiMI	CAYNNNNRTG	2 cut(s)	315, 785
SphI	GCATGC	1 cut(s)	937
Sse9I	AATT	7 cut(s)	139, 183, 254, 279, 291, 396, 917
SsiI	CCGC	6 cut(s)	159, 271, 332, 494, 514, 662
SspMI	CTAG	3 cut(s)	233, 590, 966
StyD4I	CCNGG	1 cut(s)	853
TaaI	ACNGT	1 cut(s)	533
TaiI	ACGT	3 cut(s)	438, 528, 840
TaqI	TCGA	4 cut(s)	416, 585, 668, 798
TasI	AATT	7 cut(s)	139, 183, 254, 279, 291, 396, 917
TatI	WGTACW	5 cut(s)	340, 430, 528, 541, 739
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	5 cut(s)	32, 327, 920, 960, 973
Tru9I	TTAA	5 cut(s)	32, 327, 920, 960, 973
TscAI	CASTG	2 cut(s)	75, 568
TseFI	GTSAC	3 cut(s)	86, 131, 496
TseI	GCWGC	2 cut(s)	776, 850
Tsp45I	GTSAC	3 cut(s)	86, 131, 496
TspDTI	ATGAA	3 cut(s)	88, 305, 333
TspGWI	ACGGA	2 cut(s)	54, 552
TspRI	CASTG	2 cut(s)	75, 568
XapI	RAATTY	4 cut(s)	139, 183, 279, 396
XbaI	TCTAGA	1 cut(s)	589
XceI	RCATGY	1 cut(s)	937
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	730
XmnI	GAANNNNTTC	1 cut(s)	827
XspI	CTAG	3 cut(s)	233, 590, 966
ZrmI	AGTACT	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.