Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Forward (+)

55626002 .. 55631796

Gene Structure 5795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G028100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAAGTTCTCTTTTTTCTGCTCAAAGTGTTTATTTCCCCCAGCAGGAATCATCGATGACAGCAACTTAGCCGGTGTGCAATTTCTTAAAAATGTCCACACCTTCTCGTACCAAGAATTGAAAGTCGCCACCAATGATTTTCATCCCTCCAGTAAAATTGGTGAAGGCGGATTTGGCGCTGTTTACAAGGGAAGATTAAATGACGGAAGAGATGTGGCCGTGAAAGTTCTTTCAGTGGAATCAAGACAAGGTGACAACGAGTTCATGGCTGAGCTATCATCAGTCTCCAACATTAGTCACGAAAATTTGGTGAAGTTGAACGGCGGTTGCATTGAAGGCCGTCGTAGAATTCTTGTTTATGATTACATGGAACACAACAGCCTCGCTCGTATCTTGCTAGATGACAAAACCAGATCAAAATTGGATTGGAGAGTGCGGAAAGAAATTTGTATAGGAATTGCAAGGGGACTTATCCATATTCATGAAGAGGTTAAACCGCACATTGTACACAGAGACATCAAAGCAAGCAACATACTTTTGGAGAAGAACTTTTATCCAAGAATTTCCGATTTTGGATTATCGAAGCTCTTTCCAGTACACGTTTCTCACATTACTACACGAGTGGCCGGAACTTTAGGTTATATTGCTCCGGAATATGCGGTCACCGGTCATCTAACGCGGAAATCAGACGTGTACAGTTACGGAGTACTGATTTTGCAGATAGTCAGTGGACGATCGGCAGTTGACTTCGATCTAGAACTTGGAGAACACTATCTTGTCCAAAAGGCATGGGAAATGCACATGGACAACAGACTCTTAGATATAGCGGACTCGACACTTCAGCATGATGGCAACTTTTCAGAGAAGGAAGCTCTCCATTTTCTAAAGGTGGGTCTACATTGTGTACAAGAGAAATGCAACCTCAGGCCAAAAATGTCAGCAGCCATTGAAATGATGATGATCGATCAGAATGATCAGATCAAAGTGAATGATTTCAACAACGTGGAAATAAGGCAGCCAGGAGTGATCATCAATAATATGGACTTGAAAATAGCGCAGAGGAAGAATGAAAGAAGCTCAAAATTAAGCATTAGTAGCATGCAATGCCCACAAGTGTACCCTTTTAATACTAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

379

Amino Acids

42.98

Weight (kDa)

8.09

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	48 - 315	7.2e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	50 - 263	2.4e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	895
AccII	CGCG	1 cut(s)	679
AccIII	TCCGGA	1 cut(s)	649
AciI	CCGC	7 cut(s)	168, 324, 436, 497, 659, 679, 827
AcoI	YGGCCR	2 cut(s)	216, 624
AcsI	RAATTY	4 cut(s)	304, 348, 444, 561
AcuI	CTGAAG	1 cut(s)	824
AfaI	GTAC	7 cut(s)	110, 507, 597, 695, 708, 906, 1118
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflIII	ACRYGT	2 cut(s)	598, 690
AgeI	ACCGGT	1 cut(s)	665
AgsI	TTSAA	6 cut(s)	121, 319, 335, 950, 997, 1048
AjiI	CACGTC	1 cut(s)	691
AjnI	CCWGG	1 cut(s)	1018
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	4 cut(s)	274, 586, 872, 1077
AluI	AGCT	4 cut(s)	274, 586, 872, 1077
Alw26I	GTCTC	2 cut(s)	289, 507
Aor13HI	TCCGGA	1 cut(s)	649
AoxI	GGCC	4 cut(s)	216, 337, 624, 926
ApeKI	GCWGC	2 cut(s)	941, 1015
ApoI	RAATTY	4 cut(s)	304, 348, 444, 561
AsiGI	ACCGGT	1 cut(s)	665
Asp700I	GAANNNNTTC	1 cut(s)	992
AspLEI	GCGC	2 cut(s)	179, 1057
AsuHPI	GGTGA	4 cut(s)	173, 263, 322, 655
AxyI	CCTNAGG	1 cut(s)	923
BaeI	ACNNNNGTAYC	2 cut(s)	1100, 1133
BauI	CACGAG	1 cut(s)	618
BbvI	GCAGC	2 cut(s)	953, 1027
BccI	CCATC	1 cut(s)	842
BceAI	ACGGC	3 cut(s)	203, 324, 337
BciT130I	CCWGG	1 cut(s)	1020
BclI	TGATCA	2 cut(s)	973, 1026
BcoDI	GTCTC	2 cut(s)	289, 507
BfaI	CTAG	3 cut(s)	398, 755, 1131
BfoI	RGCGCY	1 cut(s)	180
BisI	GCNGC	2 cut(s)	942, 1016
BlpI	GCTNAGC	1 cut(s)	270
BlsI	GCNGC	2 cut(s)	943, 1017
BmcAI	AGTACT	1 cut(s)	708
Bme1390I	CCNGG	1 cut(s)	1020
BmgBI	CACGTC	1 cut(s)	691
BmrFI	CCNGG	1 cut(s)	1020
BpmI	CTGGAG	1 cut(s)	133
Bpu1102I	GCTNAGC	1 cut(s)	270
Bsa29I	ATCGAT	2 cut(s)	54, 963
BsaBI	GATNNNNATC	2 cut(s)	141, 959
BsaWI	WCCGGW	2 cut(s)	649, 665
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	2 cut(s)	71, 665
Bse1I	ACTGG	2 cut(s)	150, 593
Bse21I	CCTNAGG	1 cut(s)	923
Bse3DI	GCAATG	1 cut(s)	1109
Bse8I	GATNNNNATC	2 cut(s)	141, 959
BseAI	TCCGGA	1 cut(s)	649
BseBI	CCWGG	1 cut(s)	1020
BseCI	ATCGAT	2 cut(s)	54, 963
BseGI	GGATG	1 cut(s)	142
BseJI	GATNNNNATC	2 cut(s)	141, 959
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	1109
BseMII	CTCAG	2 cut(s)	261, 937
BseNI	ACTGG	2 cut(s)	150, 593
BseXI	GCAGC	2 cut(s)	953, 1027
BseYI	CCCAGC	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	679
Bsh1285I	CGRYCG	1 cut(s)	737
BshFI	GGCC	4 cut(s)	218, 339, 626, 928
BshTI	ACCGGT	1 cut(s)	665
BshVI	ATCGAT	2 cut(s)	54, 963
BsiEI	CGRYCG	1 cut(s)	737
BsiSI	CCGG	4 cut(s)	72, 627, 650, 666
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	289, 507
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	4 cut(s)	218, 339, 626, 928
Bsp13I	TCCGGA	1 cut(s)	649
Bsp1407I	TGTACA	3 cut(s)	505, 693, 904
Bsp143I	GATC	8 cut(s)	413, 734, 751, 960, 964, 973, 978, 1026
Bsp1720I	GCTNAGC	1 cut(s)	270
BspACI	CCGC	7 cut(s)	168, 324, 436, 497, 659, 679, 827
BspANI	GGCC	4 cut(s)	218, 339, 626, 928
BspCNI	CTCAG	2 cut(s)	262, 936
BspDI	ATCGAT	2 cut(s)	54, 963
BspEI	TCCGGA	1 cut(s)	649
BspFNI	CGCG	1 cut(s)	679
BspHI	TCATGA	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	1109
BsrFI	RCCGGY	2 cut(s)	71, 665
BsrGI	TGTACA	3 cut(s)	505, 693, 904
BsrI	ACTGG	2 cut(s)	150, 593
BssAI	RCCGGY	2 cut(s)	71, 665
BssMI	GATC	8 cut(s)	413, 734, 751, 960, 964, 973, 978, 1026
BssSI	CACGAG	1 cut(s)	618
Bst2BI	CACGAG	1 cut(s)	618
Bst2UI	CCWGG	1 cut(s)	1020
Bst4CI	ACNGT	1 cut(s)	698
Bst6I	CTCTTC	2 cut(s)	202, 480
BstAPI	GCANNNNNTGC	1 cut(s)	1104
BstAUI	TGTACA	3 cut(s)	505, 693, 904
BstC8I	GCNNGC	2 cut(s)	526, 1100
BstDEI	CTNAG	4 cut(s)	67, 270, 817, 923
BstEII	GGTNACC	1 cut(s)	661
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	679
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	2 cut(s)	179, 1057
BstKTI	GATC	8 cut(s)	416, 737, 754, 963, 967, 976, 981, 1029
BstMAI	GTCTC	2 cut(s)	289, 507
BstMBI	GATC	8 cut(s)	413, 734, 751, 960, 964, 973, 978, 1026
BstMCI	CGRYCG	1 cut(s)	737
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 336, 1095, 1104
BstNI	CCWGG	1 cut(s)	1020
BstNSI	RCATGY	1 cut(s)	1102
BstPI	GGTNACC	1 cut(s)	661
BstSCI	CCNGG	1 cut(s)	1018
BstUI	CGCG	1 cut(s)	679
BstV1I	GCAGC	2 cut(s)	953, 1027
Bsu15I	ATCGAT	2 cut(s)	54, 963
Bsu36I	CCTNAGG	1 cut(s)	923
BsuRI	GGCC	4 cut(s)	218, 339, 626, 928
BsuTUI	ATCGAT	2 cut(s)	54, 963
BtrI	CACGTC	1 cut(s)	691
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	240, 733
Cac8I	GCNNGC	2 cut(s)	526, 1100
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	2 cut(s)	179, 1057
Cfr10I	RCCGGY	2 cut(s)	71, 665
ClaI	ATCGAT	2 cut(s)	54, 963
Csp6I	GTAC	7 cut(s)	109, 506, 596, 694, 707, 905, 1117
CspAI	ACCGGT	1 cut(s)	665
CviAII	CATG	7 cut(s)	265, 367, 482, 789, 802, 845, 1099
CviQI	GTAC	7 cut(s)	109, 506, 596, 694, 707, 905, 1117
DdeI	CTNAG	4 cut(s)	67, 270, 817, 923
DpnI	GATC	8 cut(s)	415, 736, 753, 962, 966, 975, 980, 1028
DpnII	GATC	8 cut(s)	413, 734, 751, 960, 964, 973, 978, 1026
EaeI	YGGCCR	2 cut(s)	216, 624
Eam1104I	CTCTTC	2 cut(s)	202, 480
EarI	CTCTTC	2 cut(s)	202, 480
EciI	GGCGGA	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	824
Eco81I	CCTNAGG	1 cut(s)	923
Eco91I	GGTNACC	1 cut(s)	661
EcoO65I	GGTNACC	1 cut(s)	661
EcoRI	GAATTC	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	1018
FaeI	CATG	7 cut(s)	268, 370, 485, 792, 805, 848, 1102
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	7 cut(s)	264, 366, 481, 788, 801, 844, 1098
FbaI	TGATCA	2 cut(s)	973, 1026
FblI	GTMKAC	1 cut(s)	895
Fnu4HI	GCNGC	2 cut(s)	942, 1016
FokI	GGATG	1 cut(s)	129
Fsp4HI	GCNGC	2 cut(s)	942, 1016
FspBI	CTAG	3 cut(s)	398, 755, 1131
GlaI	GCGC	2 cut(s)	178, 1056
GluI	GCNGC	2 cut(s)	942, 1016
GsaI	CCCAGC	1 cut(s)	44
GsuI	CTGGAG	1 cut(s)	133
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	4 cut(s)	218, 339, 626, 928
HapII	CCGG	4 cut(s)	72, 627, 650, 666
HhaI	GCGC	2 cut(s)	179, 1057
Hin1II	CATG	7 cut(s)	268, 370, 485, 792, 805, 848, 1102
Hin6I	GCGC	2 cut(s)	177, 1055
HinP1I	GCGC	2 cut(s)	177, 1055
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HinfI	GANTC	4 cut(s)	48, 239, 813, 830
HpaII	CCGG	4 cut(s)	72, 627, 650, 666
HphI	GGTGA	4 cut(s)	173, 263, 322, 655
Hpy188I	TCNGA	5 cut(s)	568, 688, 862, 969, 978
Hpy188III	TCNNGA	5 cut(s)	243, 299, 482, 650, 755
Hpy99I	CGWCG	1 cut(s)	345
HpyAV	CCTTC	4 cut(s)	112, 158, 329, 859
HpyCH4III	ACNGT	1 cut(s)	698
HpyCH4IV	ACGT	3 cut(s)	600, 690, 1002
HpyCH4V	TGCA	7 cut(s)	79, 330, 461, 718, 799, 918, 1102
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 336, 1095, 1104
HpyF3I	CTNAG	4 cut(s)	67, 270, 817, 923
HpySE526I	ACGT	3 cut(s)	600, 690, 1002
Hsp92II	CATG	7 cut(s)	268, 370, 485, 792, 805, 848, 1102
HspAI	GCGC	2 cut(s)	177, 1055
Kpn2I	TCCGGA	1 cut(s)	649
Ksp22I	TGATCA	2 cut(s)	973, 1026
Kzo9I	GATC	8 cut(s)	413, 734, 751, 960, 964, 973, 978, 1026
LmnI	GCTCC	1 cut(s)	652
Lsp1109I	GCAGC	2 cut(s)	953, 1027
MaeI	CTAG	3 cut(s)	398, 755, 1131
MaeII	ACGT	3 cut(s)	600, 690, 1002
MaeIII	GTNAC	4 cut(s)	251, 296, 661, 698
MalI	GATC	8 cut(s)	415, 736, 753, 962, 966, 975, 980, 1028
MboI	GATC	8 cut(s)	413, 734, 751, 960, 964, 973, 978, 1026
MboII	GAAGA	5 cut(s)	204, 219, 497, 556, 1075
MlyI	GAGTC	2 cut(s)	807, 824
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	5 cut(s)	157, 392, 481, 932, 1053
MroI	TCCGGA	1 cut(s)	649
MroXI	GAANNNNTTC	1 cut(s)	992
MseI	TTAA	6 cut(s)	87, 197, 492, 1085, 1125, 1138
MslI	CAYNNNNRTG	2 cut(s)	480, 950
MspI	CCGG	4 cut(s)	72, 627, 650, 666
MspR9I	CCNGG	1 cut(s)	1020
MvaI	CCWGG	1 cut(s)	1020
MvnI	CGCG	1 cut(s)	679
MwoI	GCNNNNNNNGC	4 cut(s)	174, 336, 1095, 1104
NdeII	GATC	8 cut(s)	413, 734, 751, 960, 964, 973, 978, 1026
NlaIII	CATG	7 cut(s)	268, 370, 485, 792, 805, 848, 1102
NmuCI	GTSAC	3 cut(s)	251, 296, 661
NspI	RCATGY	1 cut(s)	1102
PaeI	GCATGC	1 cut(s)	1102
PagI	TCATGA	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	992
PfeI	GAWTC	2 cut(s)	48, 239
PinAI	ACCGGT	1 cut(s)	665
PkrI	GCNGC	2 cut(s)	943, 1017
Ple19I	CGATCG	1 cut(s)	737
PleI	GAGTC	2 cut(s)	807, 824
PpsI	GAGTC	2 cut(s)	807, 824
Psp6I	CCWGG	1 cut(s)	1018
PspEI	GGTNACC	1 cut(s)	661
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	1018
PvuI	CGATCG	1 cut(s)	737
RsaI	GTAC	7 cut(s)	110, 507, 597, 695, 708, 906, 1118
RsaNI	GTAC	7 cut(s)	109, 506, 596, 694, 707, 905, 1117
RseI	CAYNNNNRTG	2 cut(s)	480, 950
SaqAI	TTAA	6 cut(s)	87, 197, 492, 1085, 1125, 1138
SatI	GCNGC	2 cut(s)	942, 1016
Sau3AI	GATC	8 cut(s)	413, 734, 751, 960, 964, 973, 978, 1026
ScaI	AGTACT	1 cut(s)	708
SchI	GAGTC	2 cut(s)	807, 824
ScrFI	CCNGG	1 cut(s)	1020
SmiMI	CAYNNNNRTG	2 cut(s)	480, 950
SphI	GCATGC	1 cut(s)	1102
SsiI	CCGC	7 cut(s)	168, 324, 436, 497, 659, 679, 827
SspMI	CTAG	3 cut(s)	398, 755, 1131
StyD4I	CCNGG	1 cut(s)	1018
TaaI	ACNGT	1 cut(s)	698
TaiI	ACGT	3 cut(s)	603, 693, 1005
TaqI	TCGA	5 cut(s)	54, 581, 750, 833, 963
TatI	WGTACW	5 cut(s)	505, 595, 693, 706, 904
TfiI	GAWTC	2 cut(s)	48, 239
Tru1I	TTAA	6 cut(s)	87, 197, 492, 1085, 1125, 1138
Tru9I	TTAA	6 cut(s)	87, 197, 492, 1085, 1125, 1138
TscAI	CASTG	2 cut(s)	240, 733
TseFI	GTSAC	3 cut(s)	251, 296, 661
TseI	GCWGC	2 cut(s)	941, 1015
Tsp45I	GTSAC	3 cut(s)	251, 296, 661
TspDTI	ATGAA	6 cut(s)	17, 131, 253, 470, 498, 1083
TspGWI	ACGGA	2 cut(s)	219, 717
TspRI	CASTG	2 cut(s)	240, 733
XapI	RAATTY	4 cut(s)	304, 348, 444, 561
XbaI	TCTAGA	1 cut(s)	754
XceI	RCATGY	1 cut(s)	1102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	895
XmnI	GAANNNNTTC	1 cut(s)	992
XspI	CTAG	3 cut(s)	398, 755, 1131
ZrmI	AGTACT	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.